Wall clock time and date at job start Tue Mar 9 2021 13:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 102.99930 * 2 1 4 4 C 1.53000 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.84899 * 43.80351 * 4 3 2 6 6 C 1.53780 * 113.61496 * 175.00071 * 4 3 2 7 7 C 1.53780 * 87.08270 * 139.97955 * 6 4 3 8 8 H 1.09002 * 113.61541 * 219.93044 * 7 6 4 9 9 N 1.46503 * 113.61431 * 89.11627 * 7 6 4 10 10 C 1.34775 * 120.00044 * 155.00378 * 9 7 6 11 11 O 1.21613 * 119.99875 * 359.97438 * 10 9 7 12 12 C 1.47374 * 119.99862 * 179.97438 * 10 9 7 13 13 C 1.36414 * 127.19594 * 359.97147 * 12 10 9 14 14 O 1.33648 * 108.39651 * 180.02562 * 13 12 10 15 15 C 1.34214 * 110.91281 * 359.72968 * 14 13 12 16 16 C 1.50696 * 125.44047 * 180.29321 * 15 14 13 17 17 O 1.42906 * 109.47005 * 245.18765 * 16 15 14 18 18 Si 1.86299 * 109.47435 * 5.18217 * 16 15 14 19 19 C 1.34177 * 109.12202 * 0.45134 * 15 14 13 20 20 C 1.53777 * 87.08062 * 334.56794 * 7 6 4 21 21 H 1.09003 * 109.46732 * 300.00076 * 1 2 3 22 22 H 1.09005 * 109.47335 * 59.99881 * 1 2 3 23 23 H 1.09005 * 109.47418 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47332 * 60.00173 * 3 2 1 25 25 H 1.09009 * 109.46926 * 300.00059 * 3 2 1 26 26 H 1.08993 * 113.61456 * 25.42880 * 6 4 3 27 27 H 1.09003 * 113.69208 * 254.53972 * 6 4 3 28 28 H 0.97004 * 119.99848 * 335.00017 * 9 7 6 29 29 H 1.08002 * 125.80107 * 0.03786 * 13 12 10 30 30 H 1.09001 * 109.47540 * 125.18893 * 16 15 14 31 31 H 0.96701 * 114.00188 * 59.99543 * 17 16 15 32 32 H 1.48506 * 109.99830 * 58.68349 * 18 16 15 33 33 H 1.48491 * 110.00235 * 180.02562 * 18 16 15 34 34 H 1.08002 * 127.02647 * 179.84063 * 19 15 14 35 35 H 1.09004 * 113.61745 * 139.98235 * 20 7 6 36 36 H 1.08997 * 113.61706 * 270.88512 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.2443 1.2674 -0.6962 6 6 4.1961 3.4041 -0.1235 7 6 5.2875 3.0701 0.9072 8 1 5.4529 3.8602 1.6396 9 7 6.5314 2.5811 0.3072 10 6 7.6985 2.7225 0.9662 11 8 7.7191 3.2565 2.0587 12 6 8.9497 2.2301 0.3629 13 6 9.0958 1.6128 -0.8448 14 8 10.3894 1.3250 -1.0176 15 6 11.1160 1.7352 0.0336 16 6 12.6082 1.5814 0.1778 17 8 12.8932 0.6996 1.2656 18 14 13.3147 0.8758 -1.3949 19 6 10.3013 2.3010 0.9372 20 6 4.3619 1.9483 1.4068 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8032 2.2371 0.8900 25 1 1.8030 2.2371 -0.8901 26 1 3.4593 4.1214 0.2377 27 1 4.5887 3.6599 -1.1077 28 1 6.5149 2.1555 -0.5643 29 1 8.3011 1.3940 -1.5427 30 1 13.0567 2.5556 0.3727 31 1 12.5238 -0.1878 1.1598 32 1 12.9976 1.7677 -2.5392 33 1 14.7856 0.7187 -1.2653 34 1 10.5817 2.7259 1.8897 35 1 4.8882 1.0272 1.6577 36 1 3.6703 2.2675 2.1864 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_13456056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:12 Heat of formation + Delta-G solvation = -23.394814 kcal Electronic energy + Delta-G solvation = -19581.771121 eV Core-core repulsion = 16354.571888 eV Total energy + Delta-G solvation = -3227.199233 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.091 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.73296 -41.24604 -39.37008 -38.00081 -34.91031 -33.82813 -31.88258 -30.49277 -29.61358 -26.74846 -26.71175 -25.37889 -23.52795 -22.33965 -21.16554 -20.31998 -19.31405 -17.81405 -17.63593 -17.47818 -17.19154 -16.89441 -16.25250 -16.13953 -15.83732 -15.65426 -15.33104 -15.04830 -14.78029 -14.29384 -14.24179 -14.04631 -13.92672 -13.59138 -13.58103 -13.32425 -12.85413 -12.82419 -12.21948 -12.10030 -11.51622 -11.28430 -11.23842 -10.97877 -10.87745 -10.62922 -10.18294 -9.80270 -8.68117 -4.97537 0.24240 0.75387 0.80134 1.17986 1.51231 1.68893 1.80664 1.93570 1.99759 2.20561 3.29891 3.42762 3.48179 3.55741 3.58534 3.73418 3.82280 3.95891 4.26322 4.28935 4.30954 4.34206 4.37888 4.43203 4.49104 4.54366 4.75079 4.77739 4.83896 4.87738 4.88278 5.02137 5.05360 5.11160 5.16569 5.55153 5.82097 6.43574 6.62471 7.11468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.321 6.321 3 C -0.063 4.063 4 C -0.086 4.086 5 H 0.103 0.897 6 C -0.118 4.118 7 C 0.111 3.889 8 H 0.083 0.917 9 N -0.692 5.692 10 C 0.588 3.412 11 O -0.586 6.586 12 C -0.270 4.270 13 C 0.068 3.932 14 O -0.162 6.162 15 C -0.052 4.052 16 C -0.038 4.038 17 O -0.546 6.546 18 Si 0.800 3.200 19 C -0.153 4.153 20 C -0.144 4.144 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.416 0.584 29 H 0.263 0.737 30 H 0.130 0.870 31 H 0.400 0.600 32 H -0.287 1.287 33 H -0.285 1.285 34 H 0.142 0.858 35 H 0.060 0.940 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -2.397 -6.607 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.096 6.096 3 C -0.211 4.211 4 C -0.105 4.105 5 H 0.121 0.879 6 C -0.158 4.158 7 C 0.006 3.994 8 H 0.102 0.898 9 N -0.344 5.344 10 C 0.378 3.622 11 O -0.467 6.467 12 C -0.275 4.275 13 C -0.003 4.003 14 O -0.057 6.057 15 C -0.100 4.100 16 C -0.147 4.147 17 O -0.354 6.354 18 Si 0.703 3.297 19 C -0.173 4.173 20 C -0.182 4.182 21 H 0.101 0.899 22 H 0.105 0.895 23 H 0.122 0.878 24 H 0.106 0.894 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.112 0.888 28 H 0.254 0.746 29 H 0.279 0.721 30 H 0.147 0.853 31 H 0.251 0.749 32 H -0.214 1.214 33 H -0.212 1.212 34 H 0.160 0.840 35 H 0.078 0.922 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.479 -2.408 -6.508 7.369 hybrid contribution -1.202 1.526 0.673 2.056 sum -3.681 -0.883 -5.835 6.955 Atomic orbital electron populations 1.23405 0.91908 1.07128 1.05692 1.87193 1.10102 1.14090 1.98182 1.23436 0.99445 0.92425 1.05805 1.22330 0.92399 0.97986 0.97799 0.87868 1.23340 0.96573 0.95926 0.99916 1.21876 0.83036 0.97211 0.97311 0.89832 1.45326 1.05292 1.61095 1.22654 1.17528 0.83254 0.77481 0.83962 1.90788 1.87407 1.45856 1.22693 1.21456 0.94073 1.12830 0.99113 1.25314 0.84243 0.94340 0.96357 1.83712 1.18474 1.63366 1.40185 1.22773 0.95609 1.04126 0.87505 1.24706 0.87349 0.99408 1.03194 1.86545 1.77807 1.27134 1.43934 0.93151 0.77626 0.87717 0.71195 1.22567 0.90969 1.02832 1.00934 1.23496 0.98466 0.98825 0.97436 0.89859 0.89518 0.87822 0.89422 0.88623 0.87306 0.88783 0.74615 0.72097 0.85297 0.74906 1.21386 1.21159 0.83965 0.92154 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.41 10.76 113.37 1.22 1.63 16 2 S -0.32 -0.20 22.37 -56.49 -1.26 -1.46 16 3 C -0.06 0.30 5.78 71.98 0.42 0.72 16 4 C -0.09 0.49 3.53 -10.27 -0.04 0.46 16 5 H 0.10 -0.65 8.13 -2.39 -0.02 -0.67 16 6 C -0.12 0.87 7.39 31.12 0.23 1.10 16 7 C 0.11 -0.14 4.32 45.52 0.20 0.06 16 8 H 0.08 0.34 7.46 -2.39 -0.02 0.32 16 9 N -0.69 1.30 5.25 -443.35 -2.33 -1.03 16 10 C 0.59 3.88 7.81 86.65 0.68 4.55 16 11 O -0.59 -9.98 16.58 -4.07 -0.07 -10.04 16 12 C -0.27 -0.79 6.31 -18.99 -0.12 -0.91 16 13 C 0.07 -0.37 11.61 67.39 0.78 0.41 16 14 O -0.16 0.41 8.90 4.52 0.04 0.45 16 15 C -0.05 -0.05 6.18 24.76 0.15 0.10 16 16 C -0.04 0.04 2.97 71.23 0.21 0.25 16 17 O -0.55 0.09 12.88 -148.98 -1.92 -1.83 16 18 Si 0.80 -2.72 32.09 68.60 2.20 -0.52 16 19 C -0.15 -0.90 10.90 23.65 0.26 -0.64 16 20 C -0.14 0.23 7.43 31.12 0.23 0.46 16 21 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 22 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 23 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 24 H 0.09 -0.46 7.84 -2.39 -0.02 -0.48 16 25 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 26 H 0.11 -0.95 8.10 -2.39 -0.02 -0.96 16 27 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H 0.42 -4.01 7.67 -92.71 -0.71 -4.72 16 29 H 0.26 -4.42 7.47 -2.91 -0.02 -4.44 16 30 H 0.13 -0.09 7.96 -2.39 -0.02 -0.11 16 31 H 0.40 -3.41 8.70 -74.06 -0.64 -4.05 16 32 H -0.29 -0.65 7.11 99.48 0.71 0.05 16 33 H -0.28 -0.79 7.11 99.48 0.71 -0.09 16 34 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 36 H 0.09 -0.15 7.90 -2.39 -0.02 -0.17 16 Total: 0.00 -23.85 325.44 0.67 -23.19 By element: Atomic # 1 Polarization: -16.73 SS G_CDS: -0.22 Total: -16.95 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 4.22 Total: 8.19 kcal Atomic # 7 Polarization: 1.30 SS G_CDS: -2.33 Total: -1.03 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.95 Total: -11.42 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.20 Total: -0.52 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -1.26 Total: -1.46 kcal Total: -23.85 0.67 -23.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13456056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.205 kcal (2) G-P(sol) polarization free energy of solvation -23.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds