Wall clock time and date at job start Tue Mar 9 2021 13:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81401 * 103.00115 * 2 1 4 4 C 1.52998 * 109.47447 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.85236 * 316.19724 * 4 3 2 6 6 C 1.54054 * 113.61597 * 87.50677 * 4 3 2 7 7 C 1.53775 * 86.98512 * 139.98034 * 6 4 3 8 8 H 1.09005 * 113.61426 * 219.97843 * 7 6 4 9 9 N 1.46502 * 113.62071 * 89.15950 * 7 6 4 10 10 C 1.34775 * 120.00330 * 105.86046 * 9 7 6 11 11 O 1.21695 * 119.99563 * 0.02562 * 10 9 7 12 12 C 1.46673 * 120.00145 * 180.02562 * 10 9 7 13 13 C 1.37874 * 126.23438 * 179.97438 * 12 10 9 14 14 C 1.50707 * 126.45422 * 0.03321 * 13 12 10 15 15 C 1.39838 * 107.08799 * 179.80228 * 13 12 10 16 16 C 1.35457 * 107.86141 * 0.38296 * 15 13 12 17 17 C 1.50699 * 125.56237 * 179.88035 * 16 15 13 18 18 O 1.42894 * 109.47188 * 244.68569 * 17 16 15 19 19 Si 1.86298 * 109.46950 * 4.69243 * 17 16 15 20 20 N 1.35530 * 108.87168 * 359.60915 * 16 15 13 21 21 C 1.53782 * 113.61321 * 184.99763 * 4 3 2 22 22 H 1.08993 * 109.47092 * 60.00412 * 1 2 3 23 23 H 1.09006 * 109.46618 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47308 * 299.99759 * 1 2 3 25 25 H 1.08999 * 109.47126 * 59.99620 * 3 2 1 26 26 H 1.09001 * 109.47162 * 300.00176 * 3 2 1 27 27 H 1.08995 * 113.61628 * 25.46786 * 6 4 3 28 28 H 1.09003 * 113.69150 * 254.49088 * 6 4 3 29 29 H 0.97003 * 119.99767 * 285.86888 * 9 7 6 30 30 H 1.08997 * 109.47082 * 90.00382 * 14 13 12 31 31 H 1.09000 * 109.46653 * 210.00313 * 14 13 12 32 32 H 1.09000 * 109.47316 * 330.00116 * 14 13 12 33 33 H 1.07997 * 126.06592 * 180.26921 * 15 13 12 34 34 H 1.09006 * 109.46662 * 124.68839 * 17 16 15 35 35 H 0.96709 * 113.99337 * 60.00344 * 18 17 16 36 36 H 1.48506 * 109.99834 * 180.02562 * 19 17 16 37 37 H 1.48502 * 110.00011 * 301.31529 * 19 17 16 38 38 H 0.96996 * 125.67964 * 180.20647 * 20 16 15 39 39 H 1.08997 * 113.60912 * 105.47444 * 21 4 3 40 40 H 1.08994 * 113.61673 * 334.56673 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.2443 1.2675 0.6962 6 6 4.3630 1.9484 -1.4093 7 6 5.2874 3.0701 -0.9072 8 1 5.4527 3.8603 -1.6397 9 7 6.5313 2.5813 -0.3073 10 6 7.6939 2.6949 -0.9795 11 8 7.7104 3.2041 -2.0847 12 6 8.9391 2.2050 -0.3790 13 6 10.1936 2.2551 -0.9489 14 6 10.5407 2.8225 -2.3012 15 6 11.0838 1.6850 -0.0336 16 6 10.3722 1.2973 1.0518 17 6 10.9389 0.6321 2.2796 18 8 10.4107 -0.6909 2.3913 19 14 12.7949 0.5504 2.1408 20 7 9.0682 1.6107 0.8559 21 6 4.1960 3.4042 0.1234 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8031 2.2371 0.8899 26 1 1.8031 2.2371 -0.8900 27 1 3.6717 2.2683 -2.1888 28 1 4.8902 1.0282 -1.6612 29 1 6.5181 2.1757 0.5738 30 1 10.7817 3.8807 -2.2002 31 1 11.4011 2.2912 -2.7082 32 1 9.6905 2.7060 -2.9733 33 1 12.1493 1.5721 -0.1689 34 1 10.6656 1.2083 3.1637 35 1 10.6157 -1.2611 1.6375 36 1 13.3659 -0.1041 3.3454 37 1 13.1803 -0.2053 0.9220 38 1 8.3461 1.4434 1.4814 39 1 4.5885 3.6585 1.1080 40 1 3.4592 4.1215 -0.2379 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:15 Heat of formation + Delta-G solvation = -4.418316 kcal Electronic energy + Delta-G solvation = -21639.375719 eV Core-core repulsion = 18355.180412 eV Total energy + Delta-G solvation = -3284.195307 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.60144 -41.07921 -39.21858 -37.88710 -34.89905 -33.40221 -31.80367 -30.61165 -29.76439 -28.14878 -26.92871 -26.87043 -24.15252 -22.74025 -21.62126 -20.56774 -20.27511 -19.55087 -18.21837 -17.46489 -16.98823 -16.75587 -16.50317 -16.15242 -15.94661 -15.59653 -15.42837 -15.14729 -14.98481 -14.61286 -14.52254 -14.28755 -14.05182 -13.80969 -13.68678 -13.56090 -13.46553 -13.44987 -12.94822 -12.90349 -12.25694 -12.20794 -11.86781 -11.64644 -11.35427 -11.08235 -10.96913 -10.81314 -10.18934 -9.81879 -9.16558 -8.69614 -4.98177 0.36521 0.63617 1.10794 1.54887 1.56744 1.59267 1.82662 1.96838 2.15438 2.35496 3.19828 3.27835 3.39583 3.51477 3.57489 3.66718 3.80923 4.10564 4.12527 4.15871 4.16893 4.19119 4.24470 4.37881 4.39152 4.56182 4.59646 4.70307 4.71604 4.75226 4.83832 4.91043 4.94473 5.01103 5.04588 5.23001 5.39742 5.49668 5.66025 5.91215 6.20804 6.25130 6.42989 7.14011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.075 4.075 4 C -0.096 4.096 5 H 0.096 0.904 6 C -0.142 4.142 7 C 0.122 3.878 8 H 0.109 0.891 9 N -0.716 5.716 10 C 0.594 3.406 11 O -0.519 6.519 12 C -0.056 4.056 13 C -0.063 4.063 14 C -0.094 4.094 15 C -0.200 4.200 16 C 0.029 3.971 17 C -0.062 4.062 18 O -0.534 6.534 19 Si 0.718 3.282 20 N -0.524 5.524 21 C -0.135 4.135 22 H 0.077 0.923 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.394 0.606 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.119 0.881 35 H 0.381 0.619 36 H -0.255 1.255 37 H -0.255 1.255 38 H 0.416 0.584 39 H 0.077 0.923 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 1.991 2.736 3.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.223 4.223 4 C -0.115 4.115 5 H 0.115 0.885 6 C -0.181 4.181 7 C 0.017 3.983 8 H 0.127 0.873 9 N -0.367 5.367 10 C 0.382 3.618 11 O -0.394 6.394 12 C -0.169 4.169 13 C -0.071 4.071 14 C -0.151 4.151 15 C -0.225 4.225 16 C -0.089 4.089 17 C -0.171 4.171 18 O -0.340 6.340 19 Si 0.616 3.384 20 N -0.121 5.121 21 C -0.175 4.175 22 H 0.096 0.904 23 H 0.120 0.880 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.228 0.772 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.168 0.832 34 H 0.137 0.863 35 H 0.229 0.771 36 H -0.180 1.180 37 H -0.179 1.179 38 H 0.253 0.747 39 H 0.096 0.904 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.031 1.186 2.528 2.792 hybrid contribution -2.110 -0.305 0.498 2.189 sum -2.079 0.881 3.025 3.775 Atomic orbital electron populations 1.23394 0.93957 1.06756 1.04967 1.87042 1.07613 1.11219 1.98051 1.23423 0.99248 0.94591 1.05070 1.22433 0.92669 0.97437 0.99005 0.88532 1.23552 0.98483 0.99796 0.96249 1.21812 0.82549 0.97509 0.96452 0.87322 1.45560 1.06864 1.63270 1.21004 1.17011 0.81566 0.78351 0.84875 1.90842 1.85774 1.43875 1.18931 1.20205 0.95468 1.12382 0.88847 1.19945 0.90211 0.99894 0.97064 1.20400 1.02439 1.00311 0.91915 1.20631 0.99685 1.08058 0.94112 1.21042 0.83961 1.05018 0.98926 1.24902 1.11667 0.84036 0.96480 1.86599 1.77621 1.21969 1.47834 0.94242 0.72885 0.90879 0.80355 1.41862 1.08664 1.46310 1.15252 1.23396 0.97842 0.96282 0.99970 0.90399 0.87957 0.90457 0.89846 0.89739 0.88646 0.90596 0.77214 0.91064 0.91657 0.90052 0.83214 0.86298 0.77115 1.18032 1.17870 0.74662 0.90442 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.15 10.76 101.05 1.09 1.23 16 2 S -0.27 -0.23 22.37 -107.50 -2.40 -2.64 16 3 C -0.08 0.11 5.78 37.16 0.21 0.32 16 4 C -0.10 0.18 3.55 -89.66 -0.32 -0.14 16 5 H 0.10 -0.14 8.13 -51.93 -0.42 -0.56 16 6 C -0.14 0.11 7.45 -25.78 -0.19 -0.09 16 7 C 0.12 -0.09 4.29 -67.12 -0.29 -0.38 16 8 H 0.11 0.08 7.50 -51.93 -0.39 -0.31 16 9 N -0.72 0.36 5.26 -54.32 -0.29 0.07 16 10 C 0.59 1.51 7.79 -12.86 -0.10 1.41 16 11 O -0.52 -2.99 14.42 5.19 0.07 -2.91 16 12 C -0.06 -0.10 7.06 -81.98 -0.58 -0.68 16 13 C -0.06 -0.14 6.21 -104.15 -0.65 -0.78 16 14 C -0.09 -0.17 9.83 36.01 0.35 0.19 16 15 C -0.20 -0.09 9.27 -39.98 -0.37 -0.46 16 16 C 0.03 -0.01 6.47 -81.95 -0.53 -0.54 16 17 C -0.06 0.09 3.08 36.01 0.11 0.21 16 18 O -0.53 0.08 12.88 -35.23 -0.45 -0.37 16 19 Si 0.72 -1.45 30.56 -169.99 -5.19 -6.65 16 20 N -0.52 0.31 5.99 -5.70 -0.03 0.28 16 21 C -0.14 0.37 7.38 -25.92 -0.19 0.18 16 22 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 23 H 0.10 -0.16 8.14 -51.92 -0.42 -0.58 16 24 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 25 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 26 H 0.08 -0.16 7.85 -51.92 -0.41 -0.57 16 27 H 0.10 -0.10 7.90 -51.93 -0.41 -0.51 16 28 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 29 H 0.39 -1.10 7.83 -40.82 -0.32 -1.42 16 30 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.06 0.03 8.14 -51.93 -0.42 -0.40 16 32 H 0.08 0.29 6.48 -51.93 -0.34 -0.05 16 33 H 0.15 -0.20 6.19 -52.49 -0.32 -0.52 16 34 H 0.12 -0.31 7.96 -51.93 -0.41 -0.72 16 35 H 0.38 -0.95 8.70 45.56 0.40 -0.55 16 36 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 37 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 38 H 0.42 -1.20 8.19 -40.82 -0.33 -1.53 16 39 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 40 H 0.10 -0.34 8.10 -51.93 -0.42 -0.77 16 LS Contribution 344.56 15.07 5.19 5.19 Total: 0.00 -7.12 344.56 -10.52 -17.64 By element: Atomic # 1 Polarization: -5.12 SS G_CDS: -5.96 Total: -11.08 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.45 Total: 0.47 kcal Atomic # 7 Polarization: 0.67 SS G_CDS: -0.32 Total: 0.35 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -0.38 Total: -3.29 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: -5.19 Total: -6.65 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.40 Total: -2.64 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -7.12 -10.52 -17.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.221 kcal (2) G-P(sol) polarization free energy of solvation -7.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds