Wall clock time and date at job start Tue Mar 9 2021 13:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81401 * 103.00115 * 2 1 4 4 C 1.52998 * 109.47447 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.85236 * 316.19724 * 4 3 2 6 6 C 1.54054 * 113.61597 * 87.50677 * 4 3 2 7 7 C 1.53775 * 86.98512 * 139.98034 * 6 4 3 8 8 H 1.09005 * 113.61426 * 219.97843 * 7 6 4 9 9 N 1.46502 * 113.62071 * 89.15950 * 7 6 4 10 10 C 1.34775 * 120.00330 * 105.86046 * 9 7 6 11 11 O 1.21695 * 119.99563 * 0.02562 * 10 9 7 12 12 C 1.46673 * 120.00145 * 180.02562 * 10 9 7 13 13 C 1.37874 * 126.23438 * 179.97438 * 12 10 9 14 14 C 1.50707 * 126.45422 * 0.03321 * 13 12 10 15 15 C 1.39838 * 107.08799 * 179.80228 * 13 12 10 16 16 C 1.35457 * 107.86141 * 0.38296 * 15 13 12 17 17 C 1.50699 * 125.56237 * 179.88035 * 16 15 13 18 18 O 1.42894 * 109.47188 * 244.68569 * 17 16 15 19 19 Si 1.86298 * 109.46950 * 4.69243 * 17 16 15 20 20 N 1.35530 * 108.87168 * 359.60915 * 16 15 13 21 21 C 1.53782 * 113.61321 * 184.99763 * 4 3 2 22 22 H 1.08993 * 109.47092 * 60.00412 * 1 2 3 23 23 H 1.09006 * 109.46618 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47308 * 299.99759 * 1 2 3 25 25 H 1.08999 * 109.47126 * 59.99620 * 3 2 1 26 26 H 1.09001 * 109.47162 * 300.00176 * 3 2 1 27 27 H 1.08995 * 113.61628 * 25.46786 * 6 4 3 28 28 H 1.09003 * 113.69150 * 254.49088 * 6 4 3 29 29 H 0.97003 * 119.99767 * 285.86888 * 9 7 6 30 30 H 1.08997 * 109.47082 * 90.00382 * 14 13 12 31 31 H 1.09000 * 109.46653 * 210.00313 * 14 13 12 32 32 H 1.09000 * 109.47316 * 330.00116 * 14 13 12 33 33 H 1.07997 * 126.06592 * 180.26921 * 15 13 12 34 34 H 1.09006 * 109.46662 * 124.68839 * 17 16 15 35 35 H 0.96709 * 113.99337 * 60.00344 * 18 17 16 36 36 H 1.48506 * 109.99834 * 180.02562 * 19 17 16 37 37 H 1.48502 * 110.00011 * 301.31529 * 19 17 16 38 38 H 0.96996 * 125.67964 * 180.20647 * 20 16 15 39 39 H 1.08997 * 113.60912 * 105.47444 * 21 4 3 40 40 H 1.08994 * 113.61673 * 334.56673 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.2443 1.2675 0.6962 6 6 4.3630 1.9484 -1.4093 7 6 5.2874 3.0701 -0.9072 8 1 5.4527 3.8603 -1.6397 9 7 6.5313 2.5813 -0.3073 10 6 7.6939 2.6949 -0.9795 11 8 7.7104 3.2041 -2.0847 12 6 8.9391 2.2050 -0.3790 13 6 10.1936 2.2551 -0.9489 14 6 10.5407 2.8225 -2.3012 15 6 11.0838 1.6850 -0.0336 16 6 10.3722 1.2973 1.0518 17 6 10.9389 0.6321 2.2796 18 8 10.4107 -0.6909 2.3913 19 14 12.7949 0.5504 2.1408 20 7 9.0682 1.6107 0.8559 21 6 4.1960 3.4042 0.1234 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8031 2.2371 0.8899 26 1 1.8031 2.2371 -0.8900 27 1 3.6717 2.2683 -2.1888 28 1 4.8902 1.0282 -1.6612 29 1 6.5181 2.1757 0.5738 30 1 10.7817 3.8807 -2.2002 31 1 11.4011 2.2912 -2.7082 32 1 9.6905 2.7060 -2.9733 33 1 12.1493 1.5721 -0.1689 34 1 10.6656 1.2083 3.1637 35 1 10.6157 -1.2611 1.6375 36 1 13.3659 -0.1041 3.3454 37 1 13.1803 -0.2053 0.9220 38 1 8.3461 1.4434 1.4814 39 1 4.5885 3.6585 1.1080 40 1 3.4592 4.1215 -0.2379 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:14 Heat of formation + Delta-G solvation = -2.705561 kcal Electronic energy + Delta-G solvation = -21639.301448 eV Core-core repulsion = 18355.180412 eV Total energy + Delta-G solvation = -3284.121036 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.63901 -41.08204 -39.31346 -37.84705 -34.97694 -33.47217 -31.80634 -30.54425 -29.66745 -28.21409 -26.93829 -26.76320 -24.11269 -22.78259 -21.61432 -20.63947 -20.22271 -19.58558 -18.20721 -17.45934 -17.02819 -16.75646 -16.48888 -16.16554 -15.90487 -15.58194 -15.42448 -15.15270 -14.97289 -14.65839 -14.44322 -14.26538 -13.97636 -13.81668 -13.62172 -13.61159 -13.55260 -13.37037 -13.01766 -12.87257 -12.27869 -12.14369 -11.85848 -11.57355 -11.28498 -11.19618 -10.92936 -10.82316 -10.25775 -9.84313 -9.22609 -8.74059 -4.83623 0.27461 0.70442 1.22029 1.51381 1.64291 1.69400 1.87826 1.96964 2.20681 2.21705 3.34190 3.37401 3.50828 3.55988 3.66732 3.73371 3.80998 4.12094 4.20615 4.23096 4.27147 4.29817 4.37594 4.47906 4.48952 4.68758 4.70148 4.72918 4.77110 4.80564 4.83630 4.90595 4.96435 4.99322 5.08737 5.15600 5.33351 5.48918 5.61941 5.83648 6.27414 6.38829 6.44147 7.03327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.327 6.327 3 C -0.061 4.061 4 C -0.089 4.089 5 H 0.094 0.906 6 C -0.143 4.143 7 C 0.115 3.885 8 H 0.092 0.908 9 N -0.702 5.702 10 C 0.590 3.410 11 O -0.560 6.560 12 C -0.070 4.070 13 C -0.085 4.085 14 C -0.090 4.090 15 C -0.208 4.208 16 C 0.038 3.962 17 C -0.064 4.064 18 O -0.549 6.549 19 Si 0.795 3.205 20 N -0.514 5.514 21 C -0.117 4.117 22 H 0.084 0.916 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.407 0.593 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.166 0.834 34 H 0.135 0.865 35 H 0.389 0.611 36 H -0.298 1.298 37 H -0.282 1.282 38 H 0.427 0.573 39 H 0.089 0.911 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 2.427 4.060 4.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.102 6.102 3 C -0.209 4.209 4 C -0.108 4.108 5 H 0.112 0.888 6 C -0.181 4.181 7 C 0.009 3.991 8 H 0.110 0.890 9 N -0.353 5.353 10 C 0.379 3.621 11 O -0.439 6.439 12 C -0.184 4.184 13 C -0.093 4.093 14 C -0.148 4.148 15 C -0.232 4.232 16 C -0.081 4.081 17 C -0.172 4.172 18 O -0.357 6.357 19 Si 0.698 3.302 20 N -0.111 5.111 21 C -0.157 4.157 22 H 0.103 0.897 23 H 0.122 0.878 24 H 0.105 0.895 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.183 0.817 34 H 0.153 0.847 35 H 0.239 0.761 36 H -0.225 1.225 37 H -0.208 1.208 38 H 0.266 0.734 39 H 0.108 0.892 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.479 1.619 3.883 4.234 hybrid contribution -1.959 -0.497 0.098 2.023 sum -2.438 1.122 3.981 4.801 Atomic orbital electron populations 1.23399 0.91624 1.07151 1.05781 1.87247 1.10406 1.14313 1.98197 1.23426 0.99252 0.92299 1.05939 1.22367 0.92525 0.98054 0.97871 0.88783 1.23542 0.98555 0.98778 0.97267 1.21878 0.82790 0.97178 0.97228 0.88994 1.45453 1.06255 1.62401 1.21212 1.17200 0.82461 0.77955 0.84513 1.90817 1.86430 1.45930 1.20677 1.20121 0.95130 1.13311 0.89801 1.20178 0.91010 1.00639 0.97509 1.20341 1.01980 1.00647 0.91785 1.20837 1.00428 1.07982 0.93933 1.21224 0.83820 1.04107 0.98965 1.25089 1.11878 0.83694 0.96565 1.86581 1.77941 1.22535 1.48595 0.93302 0.71028 0.89392 0.76483 1.41824 1.09126 1.45505 1.14643 1.23338 0.96770 0.95772 0.99822 0.89671 0.87836 0.89498 0.88655 0.89060 0.88332 0.92597 0.75733 0.90985 0.90369 0.92223 0.81711 0.84692 0.76096 1.22546 1.20832 0.73359 0.89207 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.32 10.76 113.37 1.22 1.54 16 2 S -0.33 -0.66 22.37 -56.49 -1.26 -1.92 16 3 C -0.06 0.23 5.78 71.98 0.42 0.64 16 4 C -0.09 0.37 3.55 -10.17 -0.04 0.33 16 5 H 0.09 -0.31 8.13 -2.39 -0.02 -0.33 16 6 C -0.14 0.10 7.45 31.21 0.23 0.33 16 7 C 0.11 -0.10 4.29 45.52 0.20 0.09 16 8 H 0.09 0.27 7.50 -2.38 -0.02 0.25 16 9 N -0.70 0.28 5.26 -444.00 -2.34 -2.06 16 10 C 0.59 3.83 7.79 86.45 0.67 4.50 16 11 O -0.56 -7.78 14.42 -4.33 -0.06 -7.85 16 12 C -0.07 -0.30 7.06 40.35 0.28 -0.01 16 13 C -0.08 -0.43 6.21 -19.56 -0.12 -0.55 16 14 C -0.09 -0.46 9.83 71.24 0.70 0.24 16 15 C -0.21 -0.12 9.27 22.01 0.20 0.08 16 16 C 0.04 -0.06 6.47 41.34 0.27 0.21 16 17 C -0.06 0.27 3.08 71.24 0.22 0.49 16 18 O -0.55 0.66 12.88 -148.98 -1.92 -1.26 16 19 Si 0.79 -3.65 30.56 68.60 2.10 -1.55 16 20 N -0.51 0.80 5.99 -171.93 -1.03 -0.23 16 21 C -0.12 0.77 7.38 31.12 0.23 1.00 16 22 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 23 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 24 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 25 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H 0.09 -0.44 7.85 -2.39 -0.02 -0.46 16 27 H 0.10 -0.15 7.90 -2.39 -0.02 -0.17 16 28 H 0.06 0.19 8.14 -2.39 -0.02 0.18 16 29 H 0.41 -2.35 7.83 -92.71 -0.73 -3.08 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.06 0.57 6.48 -2.39 -0.02 0.56 16 33 H 0.17 -0.55 6.19 -2.91 -0.02 -0.57 16 34 H 0.14 -0.97 7.96 -2.38 -0.02 -0.98 16 35 H 0.39 -2.17 8.70 -74.05 -0.64 -2.82 16 36 H -0.30 -0.79 7.11 99.48 0.71 -0.08 16 37 H -0.28 -0.02 7.11 99.48 0.71 0.69 16 38 H 0.43 -2.80 8.19 -92.71 -0.76 -3.56 16 39 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 40 H 0.11 -0.98 8.10 -2.39 -0.02 -0.99 16 Total: 0.00 -18.39 344.56 -1.05 -19.44 By element: Atomic # 1 Polarization: -12.43 SS G_CDS: -1.02 Total: -13.45 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 4.48 Total: 8.88 kcal Atomic # 7 Polarization: 1.07 SS G_CDS: -3.37 Total: -2.29 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -1.98 Total: -9.11 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: 2.10 Total: -1.55 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -1.26 Total: -1.92 kcal Total: -18.39 -1.05 -19.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.734 kcal (2) G-P(sol) polarization free energy of solvation -18.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds