Wall clock time and date at job start Tue Mar 9 2021 13:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81402 * 102.99955 * 2 1 4 4 C 1.53007 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.08994 * 112.85249 * 43.79509 * 4 3 2 6 6 C 1.53782 * 113.61236 * 175.00108 * 4 3 2 7 7 C 1.53786 * 87.07909 * 139.97781 * 6 4 3 8 8 H 1.09002 * 113.61357 * 220.01470 * 7 6 4 9 9 N 1.46497 * 113.61643 * 89.19525 * 7 6 4 10 10 C 1.34775 * 120.00126 * 156.52505 * 9 7 6 11 11 O 1.21286 * 119.99866 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00136 * 180.02562 * 10 9 7 13 13 C 1.53038 * 109.33131 * 180.86880 * 12 10 9 14 14 C 1.53564 * 108.55351 * 190.15819 * 13 12 10 15 15 N 1.47037 * 107.64606 * 60.96884 * 14 13 12 16 16 C 1.38925 * 118.88416 * 316.32475 * 15 14 13 17 17 C 1.31117 * 121.84676 * 13.29661 * 16 15 14 18 18 C 1.50701 * 118.54674 * 179.61406 * 17 16 15 19 19 O 1.42899 * 109.47044 * 250.02032 * 18 17 16 20 20 Si 1.86294 * 109.47073 * 10.02087 * 18 17 16 21 21 C 1.53781 * 87.17350 * 334.60554 * 7 6 4 22 22 H 1.08998 * 109.46864 * 59.99812 * 1 2 3 23 23 H 1.08994 * 109.47031 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46982 * 300.00436 * 1 2 3 25 25 H 1.08993 * 109.47339 * 59.99959 * 3 2 1 26 26 H 1.09007 * 109.47242 * 299.99523 * 3 2 1 27 27 H 1.08993 * 113.61979 * 25.42879 * 6 4 3 28 28 H 1.09000 * 113.61047 * 254.52160 * 6 4 3 29 29 H 0.97006 * 120.00058 * 336.53149 * 9 7 6 30 30 H 1.09006 * 109.32967 * 300.34544 * 12 10 9 31 31 H 1.09008 * 109.61921 * 309.88674 * 13 12 10 32 32 H 1.08993 * 109.62878 * 70.43980 * 13 12 10 33 33 H 1.09002 * 109.83417 * 301.43454 * 14 13 12 34 34 H 1.08998 * 109.87635 * 180.53160 * 14 13 12 35 35 H 0.96995 * 120.55930 * 136.34987 * 15 14 13 36 36 H 1.07993 * 119.07722 * 193.31894 * 16 15 14 37 37 H 1.08998 * 109.46751 * 130.02225 * 18 17 16 38 38 H 0.96709 * 113.99978 * 60.00195 * 19 18 17 39 39 H 1.48503 * 109.99974 * 179.97438 * 20 18 17 40 40 H 1.48497 * 109.99962 * 301.31925 * 20 18 17 41 41 H 1.09001 * 113.61695 * 139.93969 * 21 7 6 42 42 H 1.08997 * 113.61223 * 270.84552 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7424 1.9400 -0.0006 5 1 4.2444 1.2674 -0.6960 6 6 4.1961 3.4042 -0.1235 7 6 5.2875 3.0701 0.9073 8 1 5.4518 3.8597 1.6406 9 7 6.5320 2.5829 0.3073 10 6 7.6942 2.6971 0.9800 11 8 7.7098 3.2028 2.0823 12 6 8.9745 2.1964 0.3626 13 6 10.1312 2.4267 1.3379 14 6 11.4516 2.1516 0.6037 15 7 11.5435 3.0981 -0.5178 16 6 10.4174 3.3239 -1.2994 17 6 9.2248 2.9278 -0.9253 18 6 8.0532 3.2197 -1.8270 19 8 7.2200 4.2094 -1.2202 20 14 8.6735 3.8505 -3.4665 21 6 4.3640 1.9470 1.4079 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8031 2.2371 0.8899 26 1 1.8032 2.2372 -0.8901 27 1 3.4593 4.1215 0.2377 28 1 4.5886 3.6585 -1.1080 29 1 6.5195 2.1782 -0.5742 30 1 8.8841 1.1292 0.1598 31 1 10.1149 3.4589 1.6879 32 1 10.0357 1.7484 2.1857 33 1 11.4586 1.1292 0.2258 34 1 12.2911 2.3004 1.2827 35 1 12.3765 3.5569 -0.7089 36 1 10.5274 3.8398 -2.2417 37 1 7.4784 2.3068 -1.9829 38 1 7.6670 5.0504 -1.0518 39 1 7.5277 4.1416 -4.3652 40 1 9.4855 5.0773 -3.2643 41 1 4.8917 1.0266 1.6577 42 1 3.6731 2.2652 2.1885 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_15608500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:23 Heat of formation + Delta-G solvation = -6.553249 kcal Electronic energy + Delta-G solvation = -23383.141653 eV Core-core repulsion = 20071.542290 eV Total energy + Delta-G solvation = -3311.599363 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58416 -40.14316 -38.63177 -37.70580 -34.30739 -33.32866 -32.75174 -30.51639 -29.65962 -27.32261 -26.60856 -26.02692 -23.63121 -23.26159 -21.76071 -20.14464 -19.35429 -19.03963 -17.93283 -17.44939 -17.17214 -16.82298 -16.32775 -16.01265 -15.87609 -15.78342 -15.35724 -15.05395 -14.88514 -14.83608 -14.46932 -14.27425 -13.99809 -13.91493 -13.75628 -13.40922 -13.25681 -13.16656 -12.72714 -12.63128 -12.16755 -12.03795 -11.88988 -11.64828 -11.45941 -11.38236 -11.08542 -10.84297 -10.48817 -10.38827 -9.58770 -8.59327 -8.55298 -4.96812 0.74705 1.20264 1.30575 1.53924 1.67489 1.93563 2.04228 2.43649 2.51403 3.41830 3.53694 3.64416 3.66031 3.74203 3.80871 3.95149 4.03464 4.20179 4.21872 4.22839 4.25648 4.31375 4.37662 4.43354 4.51078 4.55864 4.57704 4.71650 4.78033 4.79380 4.80190 4.87498 5.05923 5.15170 5.16773 5.18525 5.30638 5.31345 5.38605 5.88157 6.20442 6.48225 6.73574 6.84531 7.58157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.266 6.266 3 C -0.074 4.074 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.132 4.132 7 C 0.132 3.868 8 H 0.097 0.903 9 N -0.686 5.686 10 C 0.534 3.466 11 O -0.550 6.550 12 C -0.040 4.040 13 C -0.119 4.119 14 C 0.119 3.881 15 N -0.747 5.747 16 C 0.153 3.847 17 C -0.281 4.281 18 C -0.056 4.056 19 O -0.524 6.524 20 Si 0.670 3.330 21 C -0.145 4.145 22 H 0.076 0.924 23 H 0.101 0.899 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.399 0.601 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.403 0.597 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.370 0.630 39 H -0.260 1.260 40 H -0.265 1.265 41 H 0.072 0.928 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 -1.024 -3.705 4.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.040 6.040 3 C -0.222 4.222 4 C -0.115 4.115 5 H 0.114 0.886 6 C -0.172 4.172 7 C 0.025 3.975 8 H 0.115 0.885 9 N -0.338 5.338 10 C 0.321 3.679 11 O -0.427 6.427 12 C -0.061 4.061 13 C -0.158 4.158 14 C -0.006 4.006 15 N -0.376 5.376 16 C 0.031 3.969 17 C -0.292 4.292 18 C -0.167 4.167 19 O -0.329 6.329 20 Si 0.573 3.427 21 C -0.184 4.184 22 H 0.095 0.905 23 H 0.120 0.880 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.237 0.763 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.237 0.763 36 H 0.150 0.850 37 H 0.123 0.877 38 H 0.218 0.782 39 H -0.185 1.185 40 H -0.191 1.191 41 H 0.091 0.909 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.586 -1.474 -3.432 4.543 hybrid contribution -0.952 1.828 0.206 2.072 sum 1.634 0.354 -3.226 3.634 Atomic orbital electron populations 1.23386 0.94205 1.06645 1.04887 1.87004 1.07344 1.11573 1.98044 1.23440 0.99633 0.94247 1.04854 1.22408 0.92163 0.97940 0.98977 0.88580 1.23327 0.97643 0.95466 1.00750 1.21590 0.83318 0.96646 0.95908 0.88455 1.45668 1.05937 1.61524 1.20710 1.20308 0.84729 0.77928 0.84950 1.90689 1.86735 1.44760 1.20555 1.19697 0.93052 1.00050 0.93331 1.21717 0.92882 1.04056 0.97157 1.21672 0.98068 0.92789 0.88021 1.44611 1.11660 1.48635 1.32734 1.20514 0.86855 0.95948 0.93586 1.20534 0.94048 1.15152 0.99424 1.24655 0.93573 0.95004 1.03456 1.86726 1.39735 1.25256 1.81218 0.95251 0.82736 0.86614 0.78135 1.23561 0.98750 1.00033 0.96077 0.90522 0.88032 0.90504 0.89956 0.90000 0.89091 0.89897 0.76302 0.88772 0.90273 0.90162 0.91805 0.89949 0.76269 0.84976 0.87677 0.78188 1.18518 1.19061 0.90910 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.06 10.76 101.05 1.09 1.15 16 2 S -0.27 -0.44 22.37 -107.50 -2.40 -2.85 16 3 C -0.07 0.01 5.78 37.16 0.21 0.23 16 4 C -0.10 0.03 3.55 -89.71 -0.32 -0.29 16 5 H 0.10 0.01 8.13 -51.93 -0.42 -0.41 16 6 C -0.13 0.07 7.39 -25.92 -0.19 -0.12 16 7 C 0.13 0.15 4.25 -67.12 -0.29 -0.14 16 8 H 0.10 0.31 7.50 -51.93 -0.39 -0.08 16 9 N -0.69 -0.53 2.93 -53.02 -0.16 -0.68 16 10 C 0.53 1.47 6.35 -10.99 -0.07 1.40 16 11 O -0.55 -3.78 15.42 5.55 0.09 -3.70 16 12 C -0.04 -0.01 2.74 -93.14 -0.26 -0.26 16 13 C -0.12 -0.04 4.92 -26.42 -0.13 -0.17 16 14 C 0.12 -0.24 7.16 -3.46 -0.02 -0.27 16 15 N -0.75 1.62 5.83 -60.67 -0.35 1.27 16 16 C 0.15 -0.26 9.62 -16.08 -0.15 -0.42 16 17 C -0.28 0.32 5.15 -101.34 -0.52 -0.20 16 18 C -0.06 0.10 1.74 36.01 0.06 0.17 16 19 O -0.52 0.23 9.36 -35.23 -0.33 -0.10 16 20 Si 0.67 -1.35 29.95 -169.99 -5.09 -6.44 16 21 C -0.15 -0.11 7.45 -25.82 -0.19 -0.30 16 22 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 23 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 24 H 0.08 -0.08 8.14 -51.92 -0.42 -0.51 16 25 H 0.08 -0.04 7.85 -51.93 -0.41 -0.45 16 26 H 0.08 -0.05 8.14 -51.92 -0.42 -0.48 16 27 H 0.09 -0.10 8.10 -51.93 -0.42 -0.52 16 28 H 0.08 -0.02 8.02 -51.93 -0.42 -0.43 16 29 H 0.40 -0.29 5.66 -40.82 -0.23 -0.52 16 30 H 0.09 -0.09 8.14 -51.93 -0.42 -0.52 16 31 H 0.08 0.21 7.75 -51.92 -0.40 -0.19 16 32 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 33 H 0.06 -0.16 8.14 -51.93 -0.42 -0.58 16 34 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 35 H 0.40 -1.54 8.96 -40.82 -0.37 -1.90 16 36 H 0.13 -0.39 4.30 -52.49 -0.23 -0.62 16 37 H 0.11 -0.31 6.39 -51.93 -0.33 -0.64 16 38 H 0.37 -0.48 8.70 45.56 0.40 -0.09 16 39 H -0.26 -0.44 7.11 56.52 0.40 -0.04 16 40 H -0.26 -0.05 6.84 56.52 0.39 0.34 16 41 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 42 H 0.09 0.05 7.90 -51.93 -0.41 -0.36 16 LS Contribution 339.18 15.07 5.11 5.11 Total: 0.00 -6.41 339.18 -10.56 -16.97 By element: Atomic # 1 Polarization: -3.73 SS G_CDS: -6.64 Total: -10.37 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.78 Total: 0.78 kcal Atomic # 7 Polarization: 1.10 SS G_CDS: -0.51 Total: 0.59 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.24 Total: -3.79 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: -5.09 Total: -6.44 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.40 Total: -2.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -6.41 -10.56 -16.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_15608500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.416 kcal (2) G-P(sol) polarization free energy of solvation -6.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds