Wall clock time and date at job start Tue Mar 9 2021 13:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81402 * 102.99955 * 2 1 4 4 C 1.53007 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.08994 * 112.85249 * 43.79509 * 4 3 2 6 6 C 1.53782 * 113.61236 * 175.00108 * 4 3 2 7 7 C 1.53786 * 87.07909 * 139.97781 * 6 4 3 8 8 H 1.09002 * 113.61357 * 220.01470 * 7 6 4 9 9 N 1.46497 * 113.61643 * 89.19525 * 7 6 4 10 10 C 1.34775 * 120.00126 * 156.52505 * 9 7 6 11 11 O 1.21286 * 119.99866 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00136 * 180.02562 * 10 9 7 13 13 C 1.53038 * 109.33131 * 180.86880 * 12 10 9 14 14 C 1.53564 * 108.55351 * 190.15819 * 13 12 10 15 15 N 1.47037 * 107.64606 * 60.96884 * 14 13 12 16 16 C 1.38925 * 118.88416 * 316.32475 * 15 14 13 17 17 C 1.31117 * 121.84676 * 13.29661 * 16 15 14 18 18 C 1.50701 * 118.54674 * 179.61406 * 17 16 15 19 19 O 1.42899 * 109.47044 * 250.02032 * 18 17 16 20 20 Si 1.86294 * 109.47073 * 10.02087 * 18 17 16 21 21 C 1.53781 * 87.17350 * 334.60554 * 7 6 4 22 22 H 1.08998 * 109.46864 * 59.99812 * 1 2 3 23 23 H 1.08994 * 109.47031 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46982 * 300.00436 * 1 2 3 25 25 H 1.08993 * 109.47339 * 59.99959 * 3 2 1 26 26 H 1.09007 * 109.47242 * 299.99523 * 3 2 1 27 27 H 1.08993 * 113.61979 * 25.42879 * 6 4 3 28 28 H 1.09000 * 113.61047 * 254.52160 * 6 4 3 29 29 H 0.97006 * 120.00058 * 336.53149 * 9 7 6 30 30 H 1.09006 * 109.32967 * 300.34544 * 12 10 9 31 31 H 1.09008 * 109.61921 * 309.88674 * 13 12 10 32 32 H 1.08993 * 109.62878 * 70.43980 * 13 12 10 33 33 H 1.09002 * 109.83417 * 301.43454 * 14 13 12 34 34 H 1.08998 * 109.87635 * 180.53160 * 14 13 12 35 35 H 0.96995 * 120.55930 * 136.34987 * 15 14 13 36 36 H 1.07993 * 119.07722 * 193.31894 * 16 15 14 37 37 H 1.08998 * 109.46751 * 130.02225 * 18 17 16 38 38 H 0.96709 * 113.99978 * 60.00195 * 19 18 17 39 39 H 1.48503 * 109.99974 * 179.97438 * 20 18 17 40 40 H 1.48497 * 109.99962 * 301.31925 * 20 18 17 41 41 H 1.09001 * 113.61695 * 139.93969 * 21 7 6 42 42 H 1.08997 * 113.61223 * 270.84552 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7424 1.9400 -0.0006 5 1 4.2444 1.2674 -0.6960 6 6 4.1961 3.4042 -0.1235 7 6 5.2875 3.0701 0.9073 8 1 5.4518 3.8597 1.6406 9 7 6.5320 2.5829 0.3073 10 6 7.6942 2.6971 0.9800 11 8 7.7098 3.2028 2.0823 12 6 8.9745 2.1964 0.3626 13 6 10.1312 2.4267 1.3379 14 6 11.4516 2.1516 0.6037 15 7 11.5435 3.0981 -0.5178 16 6 10.4174 3.3239 -1.2994 17 6 9.2248 2.9278 -0.9253 18 6 8.0532 3.2197 -1.8270 19 8 7.2200 4.2094 -1.2202 20 14 8.6735 3.8505 -3.4665 21 6 4.3640 1.9470 1.4079 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8031 2.2371 0.8899 26 1 1.8032 2.2372 -0.8901 27 1 3.4593 4.1215 0.2377 28 1 4.5886 3.6585 -1.1080 29 1 6.5195 2.1782 -0.5742 30 1 8.8841 1.1292 0.1598 31 1 10.1149 3.4589 1.6879 32 1 10.0357 1.7484 2.1857 33 1 11.4586 1.1292 0.2258 34 1 12.2911 2.3004 1.2827 35 1 12.3765 3.5569 -0.7089 36 1 10.5274 3.8398 -2.2417 37 1 7.4784 2.3068 -1.9829 38 1 7.6670 5.0504 -1.0518 39 1 7.5277 4.1416 -4.3652 40 1 9.4855 5.0773 -3.2643 41 1 4.8917 1.0266 1.6577 42 1 3.6731 2.2652 2.1885 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_15608500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:22 Heat of formation + Delta-G solvation = -3.625266 kcal Electronic energy + Delta-G solvation = -23383.014686 eV Core-core repulsion = 20071.542290 eV Total energy + Delta-G solvation = -3311.472396 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67773 -40.15091 -38.77486 -37.63803 -34.47255 -33.29476 -32.67807 -30.54143 -29.63091 -27.26363 -26.66766 -25.96692 -23.66953 -23.21190 -21.87926 -20.22339 -19.28984 -18.98348 -18.03428 -17.44504 -17.22958 -16.87684 -16.32155 -16.06405 -15.88276 -15.80791 -15.34068 -15.06855 -14.88721 -14.81835 -14.46464 -14.26866 -13.98705 -13.92715 -13.75267 -13.46178 -13.30603 -13.16592 -12.73885 -12.66794 -12.17684 -12.07847 -11.85906 -11.65200 -11.44658 -11.37298 -11.17132 -10.89131 -10.69421 -10.33430 -9.74538 -8.70237 -8.42506 -4.83603 0.73175 1.29841 1.43059 1.62822 1.66987 1.83819 2.04537 2.34956 2.68535 3.47883 3.53357 3.61647 3.68444 3.74370 3.83991 3.93155 4.03500 4.24228 4.26853 4.29113 4.32798 4.35573 4.40101 4.43950 4.53578 4.63618 4.68838 4.76806 4.78535 4.81994 4.85508 4.86233 4.95850 5.06296 5.13256 5.22899 5.26792 5.29039 5.47709 5.75590 6.33375 6.57725 6.72425 6.97011 7.41977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.319 6.319 3 C -0.062 4.062 4 C -0.085 4.085 5 H 0.095 0.905 6 C -0.117 4.117 7 C 0.125 3.875 8 H 0.073 0.927 9 N -0.674 5.674 10 C 0.530 3.470 11 O -0.598 6.598 12 C -0.037 4.037 13 C -0.119 4.119 14 C 0.123 3.877 15 N -0.746 5.746 16 C 0.157 3.843 17 C -0.290 4.290 18 C -0.060 4.060 19 O -0.537 6.537 20 Si 0.753 3.247 21 C -0.144 4.144 22 H 0.085 0.915 23 H 0.105 0.895 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.408 0.592 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.412 0.588 36 H 0.146 0.854 37 H 0.119 0.881 38 H 0.373 0.627 39 H -0.310 1.310 40 H -0.292 1.292 41 H 0.058 0.942 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 -1.389 -4.819 5.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.094 6.094 3 C -0.209 4.209 4 C -0.105 4.105 5 H 0.113 0.887 6 C -0.157 4.157 7 C 0.019 3.981 8 H 0.091 0.909 9 N -0.325 5.325 10 C 0.318 3.682 11 O -0.480 6.480 12 C -0.058 4.058 13 C -0.157 4.157 14 C -0.002 4.002 15 N -0.376 5.376 16 C 0.033 3.967 17 C -0.301 4.301 18 C -0.171 4.171 19 O -0.343 6.343 20 Si 0.661 3.339 21 C -0.182 4.182 22 H 0.104 0.896 23 H 0.124 0.876 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.248 0.752 30 H 0.127 0.873 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.248 0.752 36 H 0.163 0.837 37 H 0.137 0.863 38 H 0.221 0.779 39 H -0.239 1.239 40 H -0.220 1.220 41 H 0.077 0.923 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.756 -1.865 -4.561 5.646 hybrid contribution -1.038 1.978 0.566 2.305 sum 1.718 0.113 -3.995 4.350 Atomic orbital electron populations 1.23404 0.91823 1.07193 1.05671 1.87176 1.10152 1.13860 1.98174 1.23414 0.99386 0.92572 1.05575 1.22311 0.92282 0.97966 0.97917 0.88683 1.23240 0.96828 0.95459 1.00136 1.21594 0.83882 0.96313 0.96316 0.90855 1.45606 1.05489 1.60664 1.20787 1.20828 0.85866 0.77167 0.84367 1.90662 1.87464 1.47150 1.22714 1.19713 0.91479 1.00932 0.93709 1.21665 0.94553 1.02097 0.97430 1.21682 0.96999 0.93367 0.88104 1.44686 1.11987 1.48537 1.32381 1.20700 0.86791 0.95189 0.93976 1.20453 0.94560 1.16082 0.99032 1.24831 0.93608 0.95289 1.03363 1.86704 1.40450 1.25712 1.81475 0.94367 0.79603 0.84570 0.75336 1.23529 0.98677 0.99087 0.96949 0.89606 0.87646 0.89813 0.89411 0.89000 0.88165 0.89695 0.75227 0.87308 0.93094 0.90799 0.90646 0.88665 0.75191 0.83683 0.86319 0.77886 1.23858 1.21995 0.92305 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.18 10.76 113.37 1.22 1.40 16 2 S -0.32 -1.09 22.37 -56.49 -1.26 -2.35 16 3 C -0.06 0.05 5.78 71.98 0.42 0.47 16 4 C -0.09 0.05 3.55 -10.20 -0.04 0.02 16 5 H 0.09 0.00 8.13 -2.39 -0.02 -0.02 16 6 C -0.12 0.14 7.39 31.12 0.23 0.37 16 7 C 0.13 0.42 4.25 45.52 0.19 0.62 16 8 H 0.07 0.63 7.50 -2.39 -0.02 0.62 16 9 N -0.67 -1.66 2.93 -440.03 -1.29 -2.94 16 10 C 0.53 3.68 6.35 87.66 0.56 4.24 16 11 O -0.60 -9.76 15.42 -3.05 -0.05 -9.81 16 12 C -0.04 -0.03 2.74 -12.43 -0.03 -0.06 16 13 C -0.12 -0.18 4.92 30.80 0.15 -0.03 16 14 C 0.12 -0.57 7.16 86.47 0.62 0.04 16 15 N -0.75 3.91 5.83 -345.85 -2.02 1.89 16 16 C 0.16 -0.66 9.62 83.41 0.80 0.14 16 17 C -0.29 0.75 5.15 -16.76 -0.09 0.66 16 18 C -0.06 0.25 1.74 71.24 0.12 0.37 16 19 O -0.54 0.27 9.36 -148.98 -1.39 -1.12 16 20 Si 0.75 -3.26 29.95 68.60 2.05 -1.20 16 21 C -0.14 -0.36 7.45 31.18 0.23 -0.13 16 22 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 23 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 24 H 0.08 -0.25 8.14 -2.39 -0.02 -0.26 16 25 H 0.09 -0.15 7.85 -2.39 -0.02 -0.17 16 26 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.10 -0.27 8.10 -2.39 -0.02 -0.29 16 28 H 0.08 -0.08 8.02 -2.39 -0.02 -0.10 16 29 H 0.41 -0.55 5.66 -92.70 -0.52 -1.07 16 30 H 0.11 -0.26 8.14 -2.38 -0.02 -0.28 16 31 H 0.05 0.37 7.75 -2.38 -0.02 0.36 16 32 H 0.07 0.17 8.14 -2.39 -0.02 0.16 16 33 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.41 -3.61 8.96 -92.71 -0.83 -4.44 16 36 H 0.15 -1.03 4.30 -2.91 -0.01 -1.04 16 37 H 0.12 -0.82 6.39 -2.39 -0.02 -0.84 16 38 H 0.37 -0.71 8.70 -74.05 -0.64 -1.35 16 39 H -0.31 -1.31 7.11 99.48 0.71 -0.61 16 40 H -0.29 -0.05 6.84 99.48 0.68 0.63 16 41 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.09 0.19 7.90 -2.39 -0.02 0.17 16 Total: 0.00 -17.19 339.18 -0.51 -17.70 By element: Atomic # 1 Polarization: -9.32 SS G_CDS: -0.95 Total: -10.27 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 4.39 Total: 8.11 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -3.30 Total: -1.05 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.44 Total: -10.93 kcal Atomic # 14 Polarization: -3.26 SS G_CDS: 2.05 Total: -1.20 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -1.26 Total: -2.35 kcal Total: -17.19 -0.51 -17.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_15608500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.075 kcal (2) G-P(sol) polarization free energy of solvation -17.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds