Wall clock time and date at job start Tue Mar 9 2021 13:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81405 * 102.99861 * 2 1 4 4 C 1.52999 * 109.46916 * 179.97438 * 3 2 1 5 5 H 1.08994 * 112.91039 * 316.25137 * 4 3 2 6 6 C 1.53784 * 113.61356 * 87.50412 * 4 3 2 7 7 C 1.53774 * 87.08381 * 139.97865 * 6 4 3 8 8 H 1.08997 * 113.69269 * 220.00909 * 7 6 4 9 9 N 1.46506 * 113.61546 * 89.11290 * 7 6 4 10 10 C 1.34776 * 119.99725 * 107.50026 * 9 7 6 11 11 O 1.21281 * 120.00321 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99874 * 179.97438 * 10 9 7 13 13 O 1.42897 * 109.47158 * 180.02562 * 12 10 9 14 14 C 1.35900 * 117.00207 * 180.02562 * 13 12 10 15 15 C 1.38728 * 120.05417 * 180.02562 * 14 13 12 16 16 C 1.38154 * 119.93919 * 179.97438 * 15 14 13 17 17 C 1.38260 * 120.05718 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.94431 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47278 * 300.00307 * 18 17 16 20 20 Si 1.86300 * 109.47355 * 180.02562 * 18 17 16 21 21 C 1.38268 * 120.11273 * 0.27901 * 17 16 15 22 22 C 1.38148 * 120.05255 * 359.44588 * 21 17 16 23 23 C 1.53775 * 113.61484 * 184.99840 * 4 3 2 24 24 H 1.08991 * 109.47718 * 300.00370 * 1 2 3 25 25 H 1.09000 * 109.46984 * 60.00599 * 1 2 3 26 26 H 1.09006 * 109.47295 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46914 * 59.99914 * 3 2 1 28 28 H 1.08995 * 109.46913 * 299.99488 * 3 2 1 29 29 H 1.09000 * 113.61658 * 25.42932 * 6 4 3 30 30 H 1.09002 * 113.61442 * 254.53201 * 6 4 3 31 31 H 0.97000 * 119.99772 * 287.50588 * 9 7 6 32 32 H 1.08998 * 109.46945 * 60.00467 * 12 10 9 33 33 H 1.09003 * 109.47249 * 300.00584 * 12 10 9 34 34 H 1.07991 * 120.03247 * 359.97438 * 15 14 13 35 35 H 1.08003 * 119.97033 * 180.02562 * 16 15 14 36 36 H 1.08997 * 109.47214 * 60.00282 * 18 17 16 37 37 H 0.96700 * 114.00022 * 180.02562 * 19 18 17 38 38 H 1.48506 * 110.00048 * 298.68478 * 20 18 17 39 39 H 1.48502 * 109.99996 * 59.99803 * 20 18 17 40 40 H 1.07999 * 119.97015 * 179.72707 * 21 17 16 41 41 H 1.08003 * 120.02568 * 180.27470 * 22 21 17 42 42 H 1.08998 * 113.61719 * 105.47099 * 23 4 3 43 43 H 1.08997 * 113.69116 * 334.58089 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9400 0.0006 5 1 4.2453 1.2672 0.6952 6 6 4.3619 1.9483 -1.4068 7 6 5.2874 3.0701 -0.9073 8 1 5.4527 3.8602 -1.6397 9 7 6.5313 2.5812 -0.3073 10 6 7.6984 2.7226 -0.9663 11 8 7.7190 3.2550 -2.0558 12 6 8.9780 2.2201 -0.3488 13 8 10.0693 2.4844 -1.2328 14 6 11.3040 2.0907 -0.8237 15 6 12.4085 2.3164 -1.6321 16 6 13.6627 1.9156 -1.2137 17 6 13.8176 1.2906 0.0099 18 6 15.1868 0.8550 0.4640 19 8 15.7243 -0.0806 -0.4729 20 14 15.0588 0.0510 2.1397 21 6 12.7175 1.0598 0.8151 22 6 11.4621 1.4637 0.4038 23 6 4.1961 3.4041 0.1235 24 1 -0.3634 0.5138 0.8898 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8030 2.2371 0.8900 28 1 1.8031 2.2371 -0.8900 29 1 3.6703 2.2676 -2.1865 30 1 4.8881 1.0273 -1.6577 31 1 6.5148 2.1556 0.5643 32 1 8.9013 1.1466 -0.1767 33 1 9.1480 2.7291 0.6000 34 1 12.2882 2.8049 -2.5877 35 1 14.5230 2.0914 -1.8425 36 1 15.8423 1.7237 0.5267 37 1 16.6060 -0.4047 -0.2434 38 1 14.5307 1.0230 3.1305 39 1 14.1679 -1.1349 2.0672 40 1 12.8405 0.5675 1.7684 41 1 10.6037 1.2872 1.0351 42 1 4.5885 3.6585 1.1080 43 1 3.4600 4.1225 -0.2373 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_2989410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:31 Heat of formation + Delta-G solvation = -45.701455 kcal Electronic energy + Delta-G solvation = -23922.690886 eV Core-core repulsion = 20255.222987 eV Total energy + Delta-G solvation = -3667.467900 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68907 -41.07444 -39.67776 -38.71727 -37.18595 -34.79268 -32.50012 -31.84439 -31.05387 -29.92841 -29.19897 -26.88791 -26.19109 -24.41710 -23.75338 -22.41833 -21.80809 -20.43979 -19.52660 -18.50522 -18.30189 -17.58080 -17.45834 -17.19490 -16.83739 -16.68832 -16.13989 -15.92589 -15.70409 -15.49187 -15.25534 -15.15190 -14.95242 -14.51109 -14.43903 -14.09492 -14.05926 -13.83160 -13.79224 -13.55358 -13.46681 -13.39696 -12.95352 -12.46285 -12.25124 -12.16422 -11.98551 -11.83498 -11.65735 -11.37684 -10.97749 -10.94693 -10.33232 -10.21698 -10.05423 -9.20957 -8.69972 -4.99623 0.26329 0.28920 0.63159 1.26925 1.37079 1.42624 1.56325 1.60832 1.94298 2.48923 2.62132 3.26121 3.35996 3.37683 3.43367 3.57004 3.63426 3.66696 3.77245 3.81063 3.86955 3.93689 4.10194 4.12339 4.16555 4.22183 4.23788 4.36673 4.37661 4.44953 4.55462 4.58406 4.62554 4.68524 4.70979 4.87566 4.91518 4.92351 5.00128 5.13954 5.21950 5.42141 5.49421 5.65749 6.18530 6.32852 6.62307 7.03930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.075 4.075 4 C -0.096 4.096 5 H 0.099 0.901 6 C -0.143 4.143 7 C 0.121 3.879 8 H 0.108 0.892 9 N -0.711 5.711 10 C 0.520 3.480 11 O -0.509 6.509 12 C 0.040 3.960 13 O -0.287 6.287 14 C 0.134 3.866 15 C -0.143 4.143 16 C -0.047 4.047 17 C -0.112 4.112 18 C -0.067 4.067 19 O -0.546 6.546 20 Si 0.682 3.318 21 C -0.083 4.083 22 C -0.204 4.204 23 C -0.135 4.135 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.403 0.597 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.074 0.926 37 H 0.382 0.618 38 H -0.256 1.256 39 H -0.251 1.251 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.078 0.922 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 -0.027 5.490 5.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.224 4.224 4 C -0.115 4.115 5 H 0.117 0.883 6 C -0.181 4.181 7 C 0.016 3.984 8 H 0.126 0.874 9 N -0.364 5.364 10 C 0.304 3.696 11 O -0.382 6.382 12 C -0.039 4.039 13 O -0.199 6.199 14 C 0.089 3.911 15 C -0.162 4.162 16 C -0.065 4.065 17 C -0.113 4.113 18 C -0.177 4.177 19 O -0.353 6.353 20 Si 0.583 3.417 21 C -0.100 4.100 22 C -0.223 4.223 23 C -0.174 4.174 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.238 0.762 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.092 0.908 37 H 0.229 0.771 38 H -0.181 1.181 39 H -0.176 1.176 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.097 0.903 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.401 -0.538 4.859 4.905 hybrid contribution -1.317 0.959 0.390 1.675 sum -1.718 0.422 5.249 5.539 Atomic orbital electron populations 1.23395 0.93949 1.06762 1.04970 1.87031 1.07627 1.11195 1.98052 1.23425 0.99250 0.94610 1.05081 1.22392 0.92704 0.97461 0.98964 0.88308 1.23513 0.98477 0.99744 0.96396 1.21839 0.82432 0.97609 0.96565 0.87382 1.45471 1.06009 1.62291 1.22656 1.20009 0.84346 0.79445 0.85775 1.90790 1.86309 1.41231 1.19873 1.22468 0.85302 1.02328 0.93831 1.86169 1.12840 1.76886 1.43996 1.19037 0.84616 0.94478 0.93019 1.20547 0.90106 1.04501 1.01018 1.20847 0.96606 0.94436 0.94630 1.19272 0.93360 1.02279 0.96358 1.24610 0.93821 0.96061 1.03254 1.86497 1.37189 1.61696 1.49873 0.95332 0.89267 0.81181 0.75887 1.20637 0.92129 0.98482 0.98767 1.21109 0.98485 1.05639 0.97083 1.23400 0.97731 0.96315 1.00001 0.90448 0.90413 0.87951 0.89817 0.89765 0.88636 0.90515 0.76250 0.88667 0.88679 0.84365 0.84515 0.90793 0.77051 1.18087 1.17602 0.86206 0.85084 0.90287 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.17 10.76 101.05 1.09 1.25 16 2 S -0.27 -0.16 22.37 -107.50 -2.40 -2.57 16 3 C -0.08 0.13 5.78 37.16 0.21 0.34 16 4 C -0.10 0.22 3.53 -89.81 -0.32 -0.10 16 5 H 0.10 -0.21 8.13 -51.93 -0.42 -0.63 16 6 C -0.14 0.15 7.43 -25.92 -0.19 -0.04 16 7 C 0.12 -0.12 4.32 -67.12 -0.29 -0.41 16 8 H 0.11 0.09 7.46 -51.93 -0.39 -0.30 16 9 N -0.71 0.98 5.26 -53.02 -0.28 0.70 16 10 C 0.52 0.94 7.91 -10.98 -0.09 0.86 16 11 O -0.51 -3.44 16.10 -14.35 -0.23 -3.67 16 12 C 0.04 -0.01 5.22 36.01 0.19 0.18 16 13 O -0.29 -1.07 9.67 -39.34 -0.38 -1.45 16 14 C 0.13 0.42 6.69 -39.22 -0.26 0.16 16 15 C -0.14 -0.43 9.99 -39.43 -0.39 -0.82 16 16 C -0.05 -0.12 9.60 -39.60 -0.38 -0.50 16 17 C -0.11 -0.29 5.42 -104.60 -0.57 -0.85 16 18 C -0.07 -0.01 2.81 36.00 0.10 0.09 16 19 O -0.55 -0.21 12.74 -35.23 -0.45 -0.65 16 20 Si 0.68 -0.71 29.78 -169.99 -5.06 -5.77 16 21 C -0.08 -0.20 8.66 -39.60 -0.34 -0.54 16 22 C -0.20 -0.36 9.04 -39.43 -0.36 -0.72 16 23 C -0.13 0.41 7.39 -25.92 -0.19 0.22 16 24 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 25 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 26 H 0.10 -0.17 8.14 -51.92 -0.42 -0.60 16 27 H 0.08 -0.19 8.14 -51.92 -0.42 -0.61 16 28 H 0.08 -0.17 7.84 -51.93 -0.41 -0.58 16 29 H 0.10 -0.12 7.90 -51.93 -0.41 -0.53 16 30 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 31 H 0.40 -1.74 8.70 -40.82 -0.36 -2.10 16 32 H 0.10 -0.23 7.66 -51.93 -0.40 -0.63 16 33 H 0.10 -0.26 7.66 -51.93 -0.40 -0.66 16 34 H 0.14 0.29 8.06 -52.49 -0.42 -0.14 16 35 H 0.14 0.13 8.06 -52.48 -0.42 -0.29 16 36 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 37 H 0.38 -1.79 8.74 45.56 0.40 -1.39 16 38 H -0.26 -0.31 7.11 56.52 0.40 0.09 16 39 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 40 H 0.12 0.18 4.87 -52.49 -0.26 -0.07 16 41 H 0.13 -0.15 6.30 -52.48 -0.33 -0.48 16 42 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 43 H 0.10 -0.36 8.10 -51.93 -0.42 -0.78 16 LS Contribution 370.99 15.07 5.59 5.59 Total: 0.00 -9.94 370.99 -11.39 -21.33 By element: Atomic # 1 Polarization: -6.25 SS G_CDS: -6.38 Total: -12.63 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.79 Total: -0.88 kcal Atomic # 7 Polarization: 0.98 SS G_CDS: -0.28 Total: 0.70 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -1.06 Total: -5.77 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: -5.06 Total: -5.77 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.40 Total: -2.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -9.94 -11.39 -21.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_2989410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.373 kcal (2) G-P(sol) polarization free energy of solvation -9.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds