Wall clock time and date at job start Tue Mar 9 2021 13:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81405 * 102.99861 * 2 1 4 4 C 1.52999 * 109.46916 * 179.97438 * 3 2 1 5 5 H 1.08994 * 112.91039 * 316.25137 * 4 3 2 6 6 C 1.53784 * 113.61356 * 87.50412 * 4 3 2 7 7 C 1.53774 * 87.08381 * 139.97865 * 6 4 3 8 8 H 1.08997 * 113.69269 * 220.00909 * 7 6 4 9 9 N 1.46506 * 113.61546 * 89.11290 * 7 6 4 10 10 C 1.34776 * 119.99725 * 107.50026 * 9 7 6 11 11 O 1.21281 * 120.00321 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99874 * 179.97438 * 10 9 7 13 13 O 1.42897 * 109.47158 * 180.02562 * 12 10 9 14 14 C 1.35900 * 117.00207 * 180.02562 * 13 12 10 15 15 C 1.38728 * 120.05417 * 180.02562 * 14 13 12 16 16 C 1.38154 * 119.93919 * 179.97438 * 15 14 13 17 17 C 1.38260 * 120.05718 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.94431 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47278 * 300.00307 * 18 17 16 20 20 Si 1.86300 * 109.47355 * 180.02562 * 18 17 16 21 21 C 1.38268 * 120.11273 * 0.27901 * 17 16 15 22 22 C 1.38148 * 120.05255 * 359.44588 * 21 17 16 23 23 C 1.53775 * 113.61484 * 184.99840 * 4 3 2 24 24 H 1.08991 * 109.47718 * 300.00370 * 1 2 3 25 25 H 1.09000 * 109.46984 * 60.00599 * 1 2 3 26 26 H 1.09006 * 109.47295 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46914 * 59.99914 * 3 2 1 28 28 H 1.08995 * 109.46913 * 299.99488 * 3 2 1 29 29 H 1.09000 * 113.61658 * 25.42932 * 6 4 3 30 30 H 1.09002 * 113.61442 * 254.53201 * 6 4 3 31 31 H 0.97000 * 119.99772 * 287.50588 * 9 7 6 32 32 H 1.08998 * 109.46945 * 60.00467 * 12 10 9 33 33 H 1.09003 * 109.47249 * 300.00584 * 12 10 9 34 34 H 1.07991 * 120.03247 * 359.97438 * 15 14 13 35 35 H 1.08003 * 119.97033 * 180.02562 * 16 15 14 36 36 H 1.08997 * 109.47214 * 60.00282 * 18 17 16 37 37 H 0.96700 * 114.00022 * 180.02562 * 19 18 17 38 38 H 1.48506 * 110.00048 * 298.68478 * 20 18 17 39 39 H 1.48502 * 109.99996 * 59.99803 * 20 18 17 40 40 H 1.07999 * 119.97015 * 179.72707 * 21 17 16 41 41 H 1.08003 * 120.02568 * 180.27470 * 22 21 17 42 42 H 1.08998 * 113.61719 * 105.47099 * 23 4 3 43 43 H 1.08997 * 113.69116 * 334.58089 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9400 0.0006 5 1 4.2453 1.2672 0.6952 6 6 4.3619 1.9483 -1.4068 7 6 5.2874 3.0701 -0.9073 8 1 5.4527 3.8602 -1.6397 9 7 6.5313 2.5812 -0.3073 10 6 7.6984 2.7226 -0.9663 11 8 7.7190 3.2550 -2.0558 12 6 8.9780 2.2201 -0.3488 13 8 10.0693 2.4844 -1.2328 14 6 11.3040 2.0907 -0.8237 15 6 12.4085 2.3164 -1.6321 16 6 13.6627 1.9156 -1.2137 17 6 13.8176 1.2906 0.0099 18 6 15.1868 0.8550 0.4640 19 8 15.7243 -0.0806 -0.4729 20 14 15.0588 0.0510 2.1397 21 6 12.7175 1.0598 0.8151 22 6 11.4621 1.4637 0.4038 23 6 4.1961 3.4041 0.1235 24 1 -0.3634 0.5138 0.8898 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8030 2.2371 0.8900 28 1 1.8031 2.2371 -0.8900 29 1 3.6703 2.2676 -2.1865 30 1 4.8881 1.0273 -1.6577 31 1 6.5148 2.1556 0.5643 32 1 8.9013 1.1466 -0.1767 33 1 9.1480 2.7291 0.6000 34 1 12.2882 2.8049 -2.5877 35 1 14.5230 2.0914 -1.8425 36 1 15.8423 1.7237 0.5267 37 1 16.6060 -0.4047 -0.2434 38 1 14.5307 1.0230 3.1305 39 1 14.1679 -1.1349 2.0672 40 1 12.8405 0.5675 1.7684 41 1 10.6037 1.2872 1.0351 42 1 4.5885 3.6585 1.1080 43 1 3.4600 4.1225 -0.2373 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_2989410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:31 Heat of formation + Delta-G solvation = -45.108490 kcal Electronic energy + Delta-G solvation = -23922.665173 eV Core-core repulsion = 20255.222987 eV Total energy + Delta-G solvation = -3667.442187 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77367 -41.11962 -39.72714 -38.82013 -37.19839 -34.86308 -32.60302 -31.94125 -31.00343 -29.83561 -29.16395 -26.75695 -26.23401 -24.46527 -23.75225 -22.49742 -21.87668 -20.37763 -19.61835 -18.54101 -18.29290 -17.62050 -17.50019 -17.24215 -16.84352 -16.73841 -16.10104 -15.91637 -15.79480 -15.52046 -15.31247 -15.12850 -14.96514 -14.55441 -14.33849 -14.15014 -13.95193 -13.92410 -13.74041 -13.57177 -13.46334 -13.36831 -12.88986 -12.52072 -12.23680 -12.16080 -12.06638 -11.87007 -11.55858 -11.28341 -11.12786 -10.91506 -10.29749 -10.23934 -10.19062 -9.33953 -8.72248 -4.92208 0.10593 0.16091 0.71810 1.31673 1.32577 1.35207 1.65503 1.65540 1.97384 2.46524 2.49922 3.34635 3.39172 3.46826 3.51343 3.59059 3.69965 3.72758 3.76233 3.88116 3.95302 3.97559 4.12841 4.25043 4.28022 4.30706 4.31146 4.39357 4.40665 4.49088 4.58087 4.69552 4.73558 4.79081 4.80163 4.84678 4.97552 5.00807 5.02659 5.07670 5.10978 5.35705 5.48089 5.55650 6.12296 6.34786 6.92832 7.01628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.325 6.325 3 C -0.063 4.063 4 C -0.088 4.088 5 H 0.101 0.899 6 C -0.144 4.144 7 C 0.112 3.888 8 H 0.086 0.914 9 N -0.693 5.693 10 C 0.517 3.483 11 O -0.569 6.569 12 C 0.035 3.965 13 O -0.315 6.315 14 C 0.121 3.879 15 C -0.160 4.160 16 C -0.055 4.055 17 C -0.129 4.129 18 C -0.077 4.077 19 O -0.566 6.566 20 Si 0.774 3.226 21 C -0.098 4.098 22 C -0.202 4.202 23 C -0.117 4.117 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.420 0.580 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.093 0.907 37 H 0.403 0.597 38 H -0.285 1.285 39 H -0.297 1.297 40 H 0.126 0.874 41 H 0.160 0.840 42 H 0.093 0.907 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 0.011 7.243 7.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.099 6.099 3 C -0.210 4.210 4 C -0.107 4.107 5 H 0.119 0.881 6 C -0.183 4.183 7 C 0.007 3.993 8 H 0.104 0.896 9 N -0.346 5.346 10 C 0.303 3.697 11 O -0.447 6.447 12 C -0.042 4.042 13 O -0.228 6.228 14 C 0.076 3.924 15 C -0.178 4.178 16 C -0.073 4.073 17 C -0.129 4.129 18 C -0.187 4.187 19 O -0.376 6.376 20 Si 0.680 3.320 21 C -0.116 4.116 22 C -0.220 4.220 23 C -0.157 4.157 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.258 0.742 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.111 0.889 37 H 0.254 0.746 38 H -0.212 1.212 39 H -0.224 1.224 40 H 0.143 0.857 41 H 0.178 0.822 42 H 0.112 0.888 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.493 -0.515 6.646 6.684 hybrid contribution -1.345 0.920 -0.165 1.638 sum -1.839 0.405 6.481 6.749 Atomic orbital electron populations 1.23400 0.91758 1.07143 1.05737 1.87218 1.10272 1.14211 1.98189 1.23432 0.99402 0.92350 1.05854 1.22337 0.92456 0.98078 0.97825 0.88116 1.23505 0.98533 0.98837 0.97416 1.21883 0.82937 0.97206 0.97316 0.89599 1.45357 1.05154 1.61177 1.22948 1.20453 0.85606 0.78525 0.85095 1.90763 1.87200 1.44215 1.22500 1.22740 0.83282 1.04176 0.94052 1.86129 1.13657 1.77365 1.45626 1.19160 0.84481 0.95122 0.93658 1.20734 0.90766 1.04983 1.01336 1.21004 0.96703 0.94579 0.95032 1.19694 0.94804 1.02039 0.96390 1.24813 0.93064 0.97092 1.03721 1.86444 1.38961 1.61834 1.50356 0.94322 0.87382 0.77121 0.73197 1.20866 0.92590 0.98935 0.99207 1.21394 0.99317 1.04507 0.96775 1.23335 0.96589 0.95827 0.99920 0.89495 0.89779 0.87829 0.88628 0.89294 0.88665 0.92194 0.74203 0.86104 0.85592 0.84502 0.83571 0.88912 0.74604 1.21222 1.22436 0.85671 0.82233 0.88814 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 10.76 113.37 1.22 1.57 16 2 S -0.32 -0.45 22.37 -56.49 -1.26 -1.71 16 3 C -0.06 0.26 5.78 71.98 0.42 0.68 16 4 C -0.09 0.45 3.53 -10.27 -0.04 0.42 16 5 H 0.10 -0.52 8.13 -2.39 -0.02 -0.54 16 6 C -0.14 0.20 7.43 31.12 0.23 0.44 16 7 C 0.11 -0.17 4.32 45.51 0.20 0.02 16 8 H 0.09 0.30 7.46 -2.39 -0.02 0.28 16 9 N -0.69 1.93 5.26 -440.04 -2.32 -0.38 16 10 C 0.52 2.30 7.91 87.66 0.69 2.99 16 11 O -0.57 -9.03 16.10 16.01 0.26 -8.77 16 12 C 0.04 -0.02 5.22 71.24 0.37 0.35 16 13 O -0.31 -2.68 9.67 -73.39 -0.71 -3.39 16 14 C 0.12 0.86 6.69 22.50 0.15 1.01 16 15 C -0.16 -1.19 9.99 22.37 0.22 -0.97 16 16 C -0.06 -0.32 9.60 22.26 0.21 -0.11 16 17 C -0.13 -0.69 5.42 -19.85 -0.11 -0.80 16 18 C -0.08 0.02 2.81 71.23 0.20 0.22 16 19 O -0.57 -0.11 12.74 -148.98 -1.90 -2.01 16 20 Si 0.77 -1.95 29.78 68.60 2.04 0.10 16 21 C -0.10 -0.48 8.66 22.26 0.19 -0.29 16 22 C -0.20 -0.66 9.04 22.37 0.20 -0.46 16 23 C -0.12 0.85 7.39 31.12 0.23 1.08 16 24 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 27 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 28 H 0.09 -0.44 7.84 -2.39 -0.02 -0.46 16 29 H 0.09 -0.14 7.90 -2.39 -0.02 -0.16 16 30 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 31 H 0.42 -4.14 8.70 -92.71 -0.81 -4.95 16 32 H 0.12 -0.73 7.66 -2.39 -0.02 -0.74 16 33 H 0.13 -0.89 7.66 -2.39 -0.02 -0.91 16 34 H 0.14 0.88 8.06 -2.92 -0.02 0.86 16 35 H 0.15 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.09 -0.40 7.96 -2.39 -0.02 -0.41 16 37 H 0.40 -4.20 8.74 -74.06 -0.65 -4.85 16 38 H -0.28 -0.62 7.11 99.48 0.71 0.09 16 39 H -0.30 -1.45 7.11 99.48 0.71 -0.75 16 40 H 0.13 0.38 4.87 -2.91 -0.01 0.36 16 41 H 0.16 -0.61 6.30 -2.91 -0.02 -0.63 16 42 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 43 H 0.11 -0.96 8.10 -2.39 -0.02 -0.98 16 Total: 0.00 -26.21 370.99 0.12 -26.08 By element: Atomic # 1 Polarization: -15.69 SS G_CDS: -0.39 Total: -16.07 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 4.40 Total: 6.16 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -2.32 Total: -0.38 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -2.35 Total: -14.17 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.04 Total: 0.10 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.26 Total: -1.71 kcal Total: -26.21 0.12 -26.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_2989410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.028 kcal (2) G-P(sol) polarization free energy of solvation -26.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds