Wall clock time and date at job start Tue Mar 9 2021 13:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 102.99741 * 2 1 4 4 C 1.53003 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.85000 * 43.80572 * 4 3 2 6 6 C 1.53781 * 113.61386 * 174.99692 * 4 3 2 7 7 C 1.53784 * 87.07958 * 140.06628 * 6 4 3 8 8 H 1.08999 * 113.61845 * 219.93297 * 7 6 4 9 9 N 1.46498 * 113.61288 * 89.11752 * 7 6 4 10 10 C 1.34773 * 120.00182 * 156.52796 * 9 7 6 11 11 O 1.21279 * 120.00344 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00193 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.47225 * 180.02562 * 12 10 9 14 14 O 1.42901 * 109.47046 * 180.02562 * 13 12 10 15 15 C 1.35905 * 116.99604 * 180.02562 * 14 13 12 16 16 C 1.38723 * 120.05884 * 359.72201 * 15 14 13 17 17 C 1.38145 * 119.94323 * 179.77076 * 16 15 14 18 18 C 1.38260 * 120.05692 * 0.50972 * 17 16 15 19 19 C 1.50706 * 119.94741 * 179.72528 * 18 17 16 20 20 O 1.42900 * 109.46801 * 245.02050 * 19 18 17 21 21 Si 1.86300 * 109.46960 * 5.01737 * 19 18 17 22 22 C 1.38268 * 120.10972 * 359.74026 * 18 17 16 23 23 C 1.38139 * 120.05510 * 0.02562 * 22 18 17 24 24 C 1.53779 * 87.17465 * 334.52609 * 7 6 4 25 25 H 1.08999 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47267 * 300.00075 * 1 2 3 27 27 H 1.08996 * 109.47003 * 60.00384 * 1 2 3 28 28 H 1.08998 * 109.47479 * 60.00030 * 3 2 1 29 29 H 1.08995 * 109.47338 * 299.99917 * 3 2 1 30 30 H 1.09005 * 113.61557 * 25.52455 * 6 4 3 31 31 H 1.08997 * 113.61652 * 254.61347 * 6 4 3 32 32 H 0.97005 * 119.99895 * 336.52908 * 9 7 6 33 33 H 1.08999 * 109.46845 * 60.00204 * 12 10 9 34 34 H 1.08996 * 109.47472 * 300.00289 * 12 10 9 35 35 H 1.08999 * 109.47084 * 60.00299 * 13 12 10 36 36 H 1.08998 * 109.47592 * 300.00401 * 13 12 10 37 37 H 1.08001 * 120.02769 * 0.02562 * 16 15 14 38 38 H 1.08006 * 119.97076 * 180.25587 * 17 16 15 39 39 H 1.08992 * 109.47097 * 125.01736 * 19 18 17 40 40 H 0.96695 * 113.99860 * 60.00285 * 20 19 18 41 41 H 1.48501 * 110.00062 * 180.02562 * 21 19 18 42 42 H 1.48501 * 109.99899 * 301.32344 * 21 19 18 43 43 H 1.08008 * 119.97007 * 179.97438 * 22 18 17 44 44 H 1.08001 * 120.02451 * 179.97438 * 23 22 18 45 45 H 1.09002 * 113.61689 * 140.01525 * 24 7 6 46 46 H 1.08997 * 113.61506 * 270.92488 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 1 4.2448 1.2673 -0.6944 6 6 4.1961 3.4042 -0.1222 7 6 5.2880 3.0698 0.9078 8 1 5.4540 3.8597 1.6403 9 7 6.5315 2.5808 0.3071 10 6 7.6945 2.6942 0.9786 11 8 7.7117 3.2006 2.0805 12 6 8.9735 2.1907 0.3608 13 6 10.1368 2.4381 1.3234 14 8 11.3497 1.9612 0.7373 15 6 12.4864 2.1054 1.4682 16 6 12.4363 2.6990 2.7210 17 6 13.5924 2.8401 3.4639 18 6 14.8004 2.3999 2.9553 19 6 16.0611 2.5607 3.7653 20 8 16.9448 3.4629 3.0968 21 14 15.6361 3.2397 5.4473 22 6 14.8537 1.8126 1.7047 23 6 13.6997 1.6648 0.9600 24 6 4.3639 1.9480 1.4102 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8031 2.2372 0.8900 29 1 1.8031 2.2371 -0.8899 30 1 3.4595 4.1215 0.2398 31 1 4.5881 3.6587 -1.1069 32 1 6.5178 2.1755 -0.5741 33 1 9.1573 2.7184 -0.5750 34 1 8.8861 1.1222 0.1643 35 1 9.9527 1.9101 2.2590 36 1 10.2244 3.5066 1.5204 37 1 11.4936 3.0468 3.1170 38 1 13.5533 3.2985 4.4411 39 1 16.5472 1.5916 3.8769 40 1 16.5769 4.3471 2.9630 41 1 16.8710 3.4035 6.2557 42 1 14.9440 4.5461 5.3076 43 1 15.7987 1.4699 1.3095 44 1 13.7420 1.2064 -0.0170 45 1 4.8910 1.0277 1.6616 46 1 3.6730 2.2679 2.1902 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_4549602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:35 Heat of formation + Delta-G solvation = -57.850525 kcal Electronic energy + Delta-G solvation = -25476.500991 eV Core-core repulsion = 21652.968649 eV Total energy + Delta-G solvation = -3823.532342 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54738 -41.13946 -39.69807 -39.03903 -37.22432 -34.76105 -33.36273 -32.01312 -31.45394 -30.62294 -29.75636 -26.88488 -26.65281 -25.70417 -24.05861 -23.33702 -22.21566 -21.64032 -20.40177 -19.52350 -18.41788 -17.90421 -17.50478 -17.35215 -17.18901 -16.86930 -16.39222 -16.19262 -16.06814 -16.04205 -15.56346 -15.54183 -15.15826 -14.79862 -14.68614 -14.46916 -14.36440 -14.20627 -14.17575 -13.98737 -13.67061 -13.45922 -13.40535 -13.03300 -12.86173 -12.81964 -12.24136 -12.15248 -12.03090 -11.78756 -11.65365 -11.50710 -11.36728 -11.03717 -10.96983 -10.53152 -10.18780 -9.97812 -9.15779 -8.69533 -4.92336 0.34778 0.37176 0.63578 1.33417 1.47153 1.56515 1.62521 1.64069 1.99620 2.41536 2.71443 3.26933 3.38965 3.43554 3.47688 3.57271 3.64435 3.73423 3.81281 3.84802 3.86112 3.99167 4.10585 4.12553 4.16779 4.24604 4.26072 4.32295 4.38051 4.40661 4.55551 4.57087 4.57542 4.58740 4.63585 4.70152 4.71498 4.77503 4.88877 4.92461 5.01095 5.02413 5.23425 5.34545 5.44790 5.54930 5.76285 6.29412 6.39021 6.45332 7.05367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.264 6.264 3 C -0.076 4.076 4 C -0.096 4.096 5 H 0.099 0.901 6 C -0.135 4.135 7 C 0.119 3.881 8 H 0.106 0.894 9 N -0.711 5.711 10 C 0.524 3.476 11 O -0.536 6.536 12 C -0.142 4.142 13 C 0.074 3.926 14 O -0.316 6.316 15 C 0.138 3.862 16 C -0.203 4.203 17 C -0.077 4.077 18 C -0.157 4.157 19 C -0.069 4.069 20 O -0.531 6.531 21 Si 0.683 3.317 22 C -0.053 4.053 23 C -0.151 4.151 24 C -0.142 4.142 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.404 0.596 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.375 0.625 41 H -0.257 1.257 42 H -0.261 1.261 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.076 0.924 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.002 -0.402 -2.271 5.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.038 6.038 3 C -0.224 4.224 4 C -0.115 4.115 5 H 0.117 0.883 6 C -0.175 4.175 7 C 0.013 3.987 8 H 0.124 0.876 9 N -0.363 5.363 10 C 0.310 3.690 11 O -0.412 6.412 12 C -0.182 4.182 13 C -0.002 4.002 14 O -0.230 6.230 15 C 0.093 3.907 16 C -0.221 4.221 17 C -0.095 4.095 18 C -0.157 4.157 19 C -0.179 4.179 20 O -0.337 6.337 21 Si 0.584 3.416 22 C -0.071 4.071 23 C -0.169 4.169 24 C -0.181 4.181 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.239 0.761 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.135 0.865 40 H 0.223 0.777 41 H -0.183 1.183 42 H -0.186 1.186 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.095 0.905 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.876 -0.861 -1.078 4.114 hybrid contribution -0.969 1.668 -1.218 2.282 sum -4.845 0.807 -2.296 5.422 Atomic orbital electron populations 1.23395 0.93986 1.06759 1.04956 1.87030 1.07585 1.11177 1.98049 1.23424 0.99295 0.94616 1.05044 1.22438 0.92647 0.97460 0.98969 0.88286 1.23391 0.97781 0.96313 1.00020 1.21830 0.82843 0.97505 0.96485 0.87609 1.45628 1.06541 1.62691 1.21445 1.20296 0.84794 0.78382 0.85515 1.90755 1.86755 1.43776 1.19901 1.21468 0.91143 1.04800 1.00744 1.22424 0.81301 1.00304 0.96147 1.85977 1.14349 1.78177 1.44473 1.18995 0.86281 0.95080 0.90381 1.21265 0.99952 1.05693 0.95224 1.20852 0.91804 0.97854 0.98950 1.20168 0.95010 1.03563 0.96968 1.24932 0.90617 0.98101 1.04251 1.86595 1.42935 1.25257 1.78939 0.95003 0.83283 0.85300 0.77970 1.20837 0.97665 0.95673 0.92918 1.20503 0.89825 1.04853 1.01749 1.23544 0.98478 0.99740 0.96310 0.87951 0.90432 0.90453 0.89819 0.89832 0.88273 0.90300 0.76137 0.87412 0.87339 0.90753 0.90915 0.84812 0.85356 0.86503 0.77705 1.18252 1.18641 0.84927 0.84864 0.90548 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.19 10.76 101.05 1.09 1.28 16 2 S -0.26 -0.10 22.37 -107.50 -2.40 -2.50 16 3 C -0.08 0.15 5.78 37.16 0.21 0.36 16 4 C -0.10 0.24 3.54 -89.66 -0.32 -0.08 16 5 H 0.10 -0.22 8.13 -51.93 -0.42 -0.65 16 6 C -0.14 0.46 7.38 -25.92 -0.19 0.26 16 7 C 0.12 -0.19 4.30 -67.12 -0.29 -0.48 16 8 H 0.11 0.01 7.50 -51.93 -0.39 -0.38 16 9 N -0.71 1.53 5.26 -53.02 -0.28 1.25 16 10 C 0.52 -0.01 7.83 -10.99 -0.09 -0.10 16 11 O -0.54 -2.12 15.60 5.56 0.09 -2.03 16 12 C -0.14 0.29 6.07 -27.88 -0.17 0.12 16 13 C 0.07 0.00 4.03 37.16 0.15 0.15 16 14 O -0.32 -0.47 10.14 -19.44 -0.20 -0.67 16 15 C 0.14 0.26 6.69 -39.22 -0.26 0.00 16 16 C -0.20 -0.26 9.04 -39.44 -0.36 -0.61 16 17 C -0.08 -0.06 8.66 -39.61 -0.34 -0.40 16 18 C -0.16 -0.14 5.35 -104.60 -0.56 -0.70 16 19 C -0.07 -0.03 2.80 36.01 0.10 0.08 16 20 O -0.53 -0.95 12.83 -35.23 -0.45 -1.41 16 21 Si 0.68 -0.18 29.88 -169.99 -5.08 -5.26 16 22 C -0.05 -0.06 9.68 -39.61 -0.38 -0.44 16 23 C -0.15 -0.21 9.99 -39.44 -0.39 -0.61 16 24 C -0.14 0.22 7.45 -25.78 -0.19 0.03 16 25 H 0.10 -0.20 8.14 -51.92 -0.42 -0.62 16 26 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 27 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 28 H 0.08 -0.19 7.85 -51.92 -0.41 -0.60 16 29 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 30 H 0.10 -0.38 8.10 -51.93 -0.42 -0.80 16 31 H 0.08 -0.30 8.14 -51.93 -0.42 -0.73 16 32 H 0.40 -1.85 8.70 -40.82 -0.36 -2.20 16 33 H 0.11 -0.38 8.14 -51.93 -0.42 -0.80 16 34 H 0.11 -0.37 8.14 -51.93 -0.42 -0.79 16 35 H 0.07 0.02 7.63 -51.93 -0.40 -0.37 16 36 H 0.07 0.03 7.61 -51.93 -0.40 -0.37 16 37 H 0.13 0.03 6.30 -52.49 -0.33 -0.30 16 38 H 0.13 -0.10 4.83 -52.48 -0.25 -0.36 16 39 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 40 H 0.38 -0.34 8.70 45.56 0.40 0.06 16 41 H -0.26 -0.76 7.11 56.52 0.40 -0.36 16 42 H -0.26 -0.44 7.01 56.52 0.40 -0.05 16 43 H 0.13 0.01 8.06 -52.48 -0.42 -0.41 16 44 H 0.13 0.03 8.06 -52.49 -0.42 -0.39 16 45 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 46 H 0.09 -0.16 7.91 -51.93 -0.41 -0.57 16 LS Contribution 392.01 15.07 5.91 5.91 Total: 0.00 -7.62 392.01 -11.64 -19.26 By element: Atomic # 1 Polarization: -6.17 SS G_CDS: -7.23 Total: -13.40 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.99 Total: -1.13 kcal Atomic # 7 Polarization: 1.53 SS G_CDS: -0.28 Total: 1.25 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.56 Total: -4.11 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: -5.08 Total: -5.26 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.40 Total: -2.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -7.62 -11.64 -19.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4549602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.595 kcal (2) G-P(sol) polarization free energy of solvation -7.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds