Wall clock time and date at job start Tue Mar 9 2021 13:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 102.99741 * 2 1 4 4 C 1.53003 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.85000 * 43.80572 * 4 3 2 6 6 C 1.53781 * 113.61386 * 174.99692 * 4 3 2 7 7 C 1.53784 * 87.07958 * 140.06628 * 6 4 3 8 8 H 1.08999 * 113.61845 * 219.93297 * 7 6 4 9 9 N 1.46498 * 113.61288 * 89.11752 * 7 6 4 10 10 C 1.34773 * 120.00182 * 156.52796 * 9 7 6 11 11 O 1.21279 * 120.00344 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00193 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.47225 * 180.02562 * 12 10 9 14 14 O 1.42901 * 109.47046 * 180.02562 * 13 12 10 15 15 C 1.35905 * 116.99604 * 180.02562 * 14 13 12 16 16 C 1.38723 * 120.05884 * 359.72201 * 15 14 13 17 17 C 1.38145 * 119.94323 * 179.77076 * 16 15 14 18 18 C 1.38260 * 120.05692 * 0.50972 * 17 16 15 19 19 C 1.50706 * 119.94741 * 179.72528 * 18 17 16 20 20 O 1.42900 * 109.46801 * 245.02050 * 19 18 17 21 21 Si 1.86300 * 109.46960 * 5.01737 * 19 18 17 22 22 C 1.38268 * 120.10972 * 359.74026 * 18 17 16 23 23 C 1.38139 * 120.05510 * 0.02562 * 22 18 17 24 24 C 1.53779 * 87.17465 * 334.52609 * 7 6 4 25 25 H 1.08999 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47267 * 300.00075 * 1 2 3 27 27 H 1.08996 * 109.47003 * 60.00384 * 1 2 3 28 28 H 1.08998 * 109.47479 * 60.00030 * 3 2 1 29 29 H 1.08995 * 109.47338 * 299.99917 * 3 2 1 30 30 H 1.09005 * 113.61557 * 25.52455 * 6 4 3 31 31 H 1.08997 * 113.61652 * 254.61347 * 6 4 3 32 32 H 0.97005 * 119.99895 * 336.52908 * 9 7 6 33 33 H 1.08999 * 109.46845 * 60.00204 * 12 10 9 34 34 H 1.08996 * 109.47472 * 300.00289 * 12 10 9 35 35 H 1.08999 * 109.47084 * 60.00299 * 13 12 10 36 36 H 1.08998 * 109.47592 * 300.00401 * 13 12 10 37 37 H 1.08001 * 120.02769 * 0.02562 * 16 15 14 38 38 H 1.08006 * 119.97076 * 180.25587 * 17 16 15 39 39 H 1.08992 * 109.47097 * 125.01736 * 19 18 17 40 40 H 0.96695 * 113.99860 * 60.00285 * 20 19 18 41 41 H 1.48501 * 110.00062 * 180.02562 * 21 19 18 42 42 H 1.48501 * 109.99899 * 301.32344 * 21 19 18 43 43 H 1.08008 * 119.97007 * 179.97438 * 22 18 17 44 44 H 1.08001 * 120.02451 * 179.97438 * 23 22 18 45 45 H 1.09002 * 113.61689 * 140.01525 * 24 7 6 46 46 H 1.08997 * 113.61506 * 270.92488 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 1 4.2448 1.2673 -0.6944 6 6 4.1961 3.4042 -0.1222 7 6 5.2880 3.0698 0.9078 8 1 5.4540 3.8597 1.6403 9 7 6.5315 2.5808 0.3071 10 6 7.6945 2.6942 0.9786 11 8 7.7117 3.2006 2.0805 12 6 8.9735 2.1907 0.3608 13 6 10.1368 2.4381 1.3234 14 8 11.3497 1.9612 0.7373 15 6 12.4864 2.1054 1.4682 16 6 12.4363 2.6990 2.7210 17 6 13.5924 2.8401 3.4639 18 6 14.8004 2.3999 2.9553 19 6 16.0611 2.5607 3.7653 20 8 16.9448 3.4629 3.0968 21 14 15.6361 3.2397 5.4473 22 6 14.8537 1.8126 1.7047 23 6 13.6997 1.6648 0.9600 24 6 4.3639 1.9480 1.4102 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8031 2.2372 0.8900 29 1 1.8031 2.2371 -0.8899 30 1 3.4595 4.1215 0.2398 31 1 4.5881 3.6587 -1.1069 32 1 6.5178 2.1755 -0.5741 33 1 9.1573 2.7184 -0.5750 34 1 8.8861 1.1222 0.1643 35 1 9.9527 1.9101 2.2590 36 1 10.2244 3.5066 1.5204 37 1 11.4936 3.0468 3.1170 38 1 13.5533 3.2985 4.4411 39 1 16.5472 1.5916 3.8769 40 1 16.5769 4.3471 2.9630 41 1 16.8710 3.4035 6.2557 42 1 14.9440 4.5461 5.3076 43 1 15.7987 1.4699 1.3095 44 1 13.7420 1.2064 -0.0170 45 1 4.8910 1.0277 1.6616 46 1 3.6730 2.2679 2.1902 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_4549602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:34 Heat of formation + Delta-G solvation = -54.695674 kcal Electronic energy + Delta-G solvation = -25476.364186 eV Core-core repulsion = 21652.968649 eV Total energy + Delta-G solvation = -3823.395537 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.138 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52692 -41.14661 -39.66382 -39.08516 -37.30107 -34.73105 -33.32894 -32.05338 -31.49351 -30.50229 -29.62170 -26.72169 -26.66794 -25.71058 -24.00250 -23.31165 -22.26146 -21.59221 -20.27312 -19.55616 -18.46695 -17.90743 -17.49142 -17.28739 -17.18441 -16.86591 -16.43200 -16.17746 -16.07227 -15.99545 -15.57711 -15.46362 -15.04904 -14.79030 -14.71974 -14.45389 -14.30623 -14.25318 -14.11223 -13.86865 -13.55679 -13.49617 -13.32625 -12.94983 -12.83057 -12.75925 -12.28274 -12.10002 -12.06901 -11.79251 -11.58914 -11.51526 -11.23125 -11.08268 -10.88966 -10.59563 -10.12035 -10.04305 -9.23287 -8.69867 -4.93465 0.27408 0.30292 0.74198 1.31317 1.49163 1.57698 1.67060 1.69121 1.93365 2.46618 2.64449 3.43324 3.43995 3.54459 3.56540 3.70478 3.73263 3.80222 3.82362 3.87821 3.91163 4.01229 4.25383 4.27679 4.29867 4.33121 4.33769 4.43014 4.43530 4.52952 4.56215 4.66397 4.67944 4.75036 4.77228 4.78399 4.85316 4.86602 4.97327 5.02119 5.05895 5.17429 5.18637 5.28383 5.48821 5.57262 5.71642 6.31256 6.44158 6.48668 7.13849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.323 6.323 3 C -0.063 4.063 4 C -0.089 4.089 5 H 0.099 0.901 6 C -0.119 4.119 7 C 0.113 3.887 8 H 0.087 0.913 9 N -0.699 5.699 10 C 0.522 3.478 11 O -0.582 6.582 12 C -0.133 4.133 13 C 0.073 3.927 14 O -0.321 6.321 15 C 0.123 3.877 16 C -0.210 4.210 17 C -0.081 4.081 18 C -0.158 4.158 19 C -0.074 4.074 20 O -0.548 6.548 21 Si 0.759 3.241 22 C -0.058 4.058 23 C -0.158 4.158 24 C -0.143 4.143 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.418 0.582 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.126 0.874 40 H 0.385 0.615 41 H -0.301 1.301 42 H -0.286 1.286 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.060 0.940 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 -0.337 -3.337 6.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.098 6.098 3 C -0.210 4.210 4 C -0.108 4.108 5 H 0.117 0.883 6 C -0.159 4.159 7 C 0.007 3.993 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.310 3.690 11 O -0.462 6.462 12 C -0.172 4.172 13 C -0.003 4.003 14 O -0.235 6.235 15 C 0.078 3.922 16 C -0.229 4.229 17 C -0.099 4.099 18 C -0.159 4.159 19 C -0.184 4.184 20 O -0.357 6.357 21 Si 0.666 3.334 22 C -0.076 4.076 23 C -0.177 4.177 24 C -0.182 4.182 25 H 0.122 0.878 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.255 0.745 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.144 0.856 40 H 0.234 0.766 41 H -0.230 1.230 42 H -0.213 1.213 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.078 0.922 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.552 -0.821 -2.194 5.119 hybrid contribution -0.770 1.669 -0.868 2.033 sum -5.322 0.848 -3.062 6.199 Atomic orbital electron populations 1.23400 0.91830 1.07137 1.05706 1.87215 1.10189 1.14185 1.98184 1.23432 0.99503 0.92354 1.05758 1.22385 0.92339 0.98082 0.98013 0.88309 1.23330 0.96841 0.95760 0.99977 1.21838 0.83339 0.97044 0.97057 0.89523 1.45552 1.05915 1.61862 1.21783 1.20644 0.85782 0.77654 0.84949 1.90737 1.87432 1.46042 1.21952 1.21435 0.89117 1.06042 1.00619 1.22450 0.81519 0.99716 0.96578 1.85959 1.14567 1.78299 1.44657 1.19192 0.86649 0.95578 0.90783 1.21405 1.00444 1.05742 0.95270 1.21023 0.91635 0.97753 0.99486 1.20244 0.95162 1.03434 0.97044 1.25095 0.90394 0.98528 1.04338 1.86565 1.43725 1.26150 1.79211 0.94107 0.80325 0.83344 0.75674 1.20997 0.97962 0.95637 0.93034 1.20678 0.89805 1.04929 1.02260 1.23530 0.98565 0.98957 0.97127 0.87823 0.89770 0.89563 0.89312 0.88788 0.87351 0.89059 0.74476 0.85427 0.85579 0.91502 0.91671 0.84339 0.84101 0.85587 0.76583 1.22972 1.21278 0.84090 0.83991 0.92157 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.39 10.76 113.37 1.22 1.61 16 2 S -0.32 -0.31 22.37 -56.49 -1.26 -1.58 16 3 C -0.06 0.28 5.78 71.98 0.42 0.70 16 4 C -0.09 0.49 3.54 -10.17 -0.04 0.46 16 5 H 0.10 -0.51 8.13 -2.39 -0.02 -0.53 16 6 C -0.12 0.93 7.38 31.12 0.23 1.16 16 7 C 0.11 -0.34 4.30 45.52 0.20 -0.15 16 8 H 0.09 0.12 7.50 -2.39 -0.02 0.10 16 9 N -0.70 3.08 5.26 -440.04 -2.32 0.76 16 10 C 0.52 0.21 7.83 87.66 0.69 0.90 16 11 O -0.58 -5.50 15.60 -3.03 -0.05 -5.54 16 12 C -0.13 0.59 6.07 29.85 0.18 0.77 16 13 C 0.07 0.05 4.03 71.98 0.29 0.34 16 14 O -0.32 -1.06 10.14 -92.48 -0.94 -2.00 16 15 C 0.12 0.53 6.69 22.50 0.15 0.68 16 16 C -0.21 -0.66 9.04 22.36 0.20 -0.45 16 17 C -0.08 -0.13 8.66 22.25 0.19 0.06 16 18 C -0.16 -0.27 5.35 -19.85 -0.11 -0.38 16 19 C -0.07 -0.04 2.80 71.24 0.20 0.16 16 20 O -0.55 -1.96 12.83 -148.98 -1.91 -3.87 16 21 Si 0.76 -0.26 29.88 68.60 2.05 1.79 16 22 C -0.06 -0.13 9.68 22.25 0.22 0.09 16 23 C -0.16 -0.48 9.99 22.36 0.22 -0.25 16 24 C -0.14 0.36 7.45 31.21 0.23 0.59 16 25 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.09 -0.48 7.85 -2.39 -0.02 -0.49 16 29 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.11 -0.99 8.10 -2.38 -0.02 -1.01 16 31 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 32 H 0.42 -4.22 8.70 -92.70 -0.81 -5.03 16 33 H 0.13 -1.05 8.14 -2.39 -0.02 -1.07 16 34 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 35 H 0.07 0.13 7.63 -2.39 -0.02 0.11 16 36 H 0.06 0.13 7.61 -2.39 -0.02 0.11 16 37 H 0.14 0.21 6.30 -2.91 -0.02 0.19 16 38 H 0.14 -0.23 4.83 -2.91 -0.01 -0.25 16 39 H 0.13 -0.17 7.96 -2.39 -0.02 -0.19 16 40 H 0.39 -0.64 8.70 -74.06 -0.64 -1.28 16 41 H -0.30 -2.14 7.11 99.48 0.71 -1.43 16 42 H -0.29 -1.05 7.01 99.48 0.70 -0.35 16 43 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 44 H 0.14 0.06 8.06 -2.91 -0.02 0.04 16 45 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.09 -0.24 7.91 -2.39 -0.02 -0.26 16 Total: 0.00 -18.97 392.01 -0.37 -19.33 By element: Atomic # 1 Polarization: -14.76 SS G_CDS: -0.43 Total: -15.19 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 4.49 Total: 6.29 kcal Atomic # 7 Polarization: 3.08 SS G_CDS: -2.32 Total: 0.76 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -2.90 Total: -11.41 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: 2.05 Total: 1.79 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.26 Total: -1.58 kcal Total: -18.97 -0.37 -19.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4549602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.361 kcal (2) G-P(sol) polarization free energy of solvation -18.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds