Wall clock time and date at job start Tue Mar 9 2021 13:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81397 * 103.00322 * 2 1 4 4 C 1.52997 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.08994 * 112.91116 * 43.74868 * 4 3 2 6 6 C 1.53787 * 113.61251 * 175.00177 * 4 3 2 7 7 C 1.53779 * 87.07963 * 139.97890 * 6 4 3 8 8 H 1.08999 * 113.61062 * 219.93155 * 7 6 4 9 9 N 1.46502 * 113.61301 * 89.11687 * 7 6 4 10 10 C 1.34783 * 119.99683 * 154.99921 * 9 7 6 11 11 O 1.21548 * 120.00085 * 359.97438 * 10 9 7 12 12 C 1.47843 * 119.99582 * 179.97438 * 10 9 7 13 13 C 1.39560 * 120.14449 * 179.71703 * 12 10 9 14 14 C 1.37978 * 119.85625 * 179.81289 * 13 12 10 15 15 C 1.50697 * 119.93028 * 180.21464 * 14 13 12 16 16 O 1.42902 * 109.46835 * 270.23661 * 15 14 13 17 17 C 1.35903 * 116.99708 * 179.97438 * 16 15 14 18 18 C 1.38712 * 120.05488 * 179.97438 * 17 16 15 19 19 C 1.38166 * 119.94398 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.97268 * 180.02562 * 19 18 17 21 21 O 1.42895 * 109.46907 * 299.99925 * 20 19 18 22 22 Si 1.86299 * 109.47260 * 179.97438 * 20 19 18 23 23 C 1.38246 * 120.05659 * 359.97438 * 19 18 17 24 24 C 1.38293 * 120.10923 * 0.02712 * 23 19 18 25 25 C 1.38120 * 120.05621 * 359.67680 * 24 23 19 26 26 C 1.38339 * 120.14357 * 0.44964 * 14 13 12 27 27 C 1.38383 * 120.29033 * 359.78781 * 26 14 13 28 28 C 1.37934 * 120.14696 * 359.97438 * 27 26 14 29 29 C 1.53779 * 87.08402 * 334.56577 * 7 6 4 30 30 H 1.09002 * 109.47469 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46983 * 300.00278 * 1 2 3 32 32 H 1.08997 * 109.47082 * 59.99707 * 1 2 3 33 33 H 1.08998 * 109.46839 * 59.99685 * 3 2 1 34 34 H 1.09003 * 109.46651 * 299.99925 * 3 2 1 35 35 H 1.08997 * 113.61028 * 254.52850 * 6 4 3 36 36 H 1.08998 * 113.61447 * 25.34385 * 6 4 3 37 37 H 0.96996 * 120.00397 * 334.99617 * 9 7 6 38 38 H 1.08007 * 120.06853 * 0.03473 * 13 12 10 39 39 H 1.09003 * 109.47202 * 30.23413 * 15 14 13 40 40 H 1.09001 * 109.46980 * 150.23563 * 15 14 13 41 41 H 1.07997 * 120.02717 * 359.97438 * 18 17 16 42 42 H 1.09003 * 109.47316 * 59.99941 * 20 19 18 43 43 H 0.96702 * 113.99786 * 180.02562 * 21 20 19 44 44 H 1.48496 * 110.00201 * 298.68210 * 22 20 19 45 45 H 1.48498 * 109.99936 * 60.00014 * 22 20 19 46 46 H 1.07996 * 119.94411 * 180.02562 * 23 19 18 47 47 H 1.07997 * 119.96909 * 179.97438 * 24 23 19 48 48 H 1.08001 * 120.02735 * 180.32137 * 25 24 23 49 49 H 1.07994 * 119.85438 * 179.76260 * 26 14 13 50 50 H 1.08002 * 119.92956 * 179.97438 * 27 26 14 51 51 H 1.08005 * 120.07509 * 180.02562 * 28 27 26 52 52 H 1.09002 * 113.61557 * 270.88569 * 29 7 6 53 53 H 1.09004 * 113.61501 * 139.97990 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9398 -0.0006 5 1 4.2454 1.2671 -0.6952 6 6 4.1962 3.4041 -0.1235 7 6 5.2875 3.0700 0.9072 8 1 5.4529 3.8601 1.6396 9 7 6.5314 2.5810 0.3072 10 6 7.6985 2.7224 0.9663 11 8 7.7192 3.2561 2.0581 12 6 8.9537 2.2284 0.3610 13 6 10.1648 2.3786 1.0381 14 6 11.3321 1.9119 0.4694 15 6 12.6401 2.0688 1.2012 16 8 13.2394 3.3157 0.8433 17 6 14.4332 3.6145 1.4201 18 6 15.0715 4.8083 1.1175 19 6 16.2853 5.1094 1.7048 20 6 16.9791 6.4064 1.3770 21 8 17.2507 6.4602 -0.0249 22 14 18.5796 6.5115 2.3247 23 6 16.8634 4.2225 2.5938 24 6 16.2290 3.0317 2.8971 25 6 15.0125 2.7287 2.3173 26 6 11.3050 1.3046 -0.7733 27 6 10.1082 1.1570 -1.4521 28 6 8.9335 1.6147 -0.8927 29 6 4.3619 1.9481 1.4068 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 1.8032 2.2370 0.8899 34 1 1.8032 2.2370 -0.8900 35 1 4.5886 3.6583 -1.1080 36 1 3.4587 4.1214 0.2364 37 1 6.5150 2.1554 -0.5643 38 1 10.1877 2.8559 2.0067 39 1 12.4599 2.0475 2.2760 40 1 13.3091 1.2526 0.9286 41 1 14.6205 5.5013 0.4228 42 1 16.3371 7.2423 1.6550 43 1 17.6979 7.2695 -0.3081 44 1 18.3079 6.4889 3.7844 45 1 19.4640 5.3773 1.9552 46 1 17.8120 4.4599 3.0522 47 1 16.6828 2.3403 3.5916 48 1 14.5150 1.8010 2.5585 49 1 12.2220 0.9445 -1.2157 50 1 10.0939 0.6823 -2.4221 51 1 8.0000 1.4986 -1.4233 52 1 3.6703 2.2674 2.1865 53 1 4.8882 1.0271 1.6576 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_4549630.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:43 Heat of formation + Delta-G solvation = -17.499298 kcal Electronic energy + Delta-G solvation = -32930.702149 eV Core-core repulsion = 28440.477387 eV Total energy + Delta-G solvation = -4490.224762 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.154 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.75200 -41.39050 -40.33417 -39.34865 -38.76513 -37.33019 -35.01250 -33.43183 -32.69599 -32.28090 -31.23150 -30.52247 -29.63299 -27.82833 -26.74554 -26.63810 -25.53839 -23.81874 -23.64860 -23.16305 -22.22001 -21.48647 -20.35262 -19.07727 -18.91103 -18.41855 -17.65569 -17.56562 -17.34382 -17.20545 -17.14267 -16.83953 -16.29203 -16.19869 -15.92807 -15.73410 -15.66238 -15.38771 -15.22267 -14.99792 -14.82716 -14.65958 -14.61679 -14.36278 -14.24604 -13.96100 -13.84585 -13.69728 -13.64096 -13.49658 -13.35366 -13.20685 -12.86210 -12.80076 -12.45665 -12.37550 -12.16876 -12.12226 -12.01514 -11.85095 -11.54342 -11.26837 -11.18386 -10.89897 -10.44568 -10.32012 -10.08422 -9.99038 -9.98114 -9.41337 -8.70485 -4.94375 -0.32090 0.06027 0.10368 0.22206 0.73276 1.27291 1.60796 1.64666 1.67021 1.93273 1.96249 2.15358 2.50101 2.80869 3.34514 3.39650 3.46842 3.49500 3.53053 3.69270 3.70836 3.71990 3.78775 3.79659 3.84221 3.93806 4.04100 4.09771 4.13567 4.16817 4.26141 4.28365 4.29521 4.32407 4.39052 4.40520 4.43139 4.50904 4.56663 4.65990 4.71844 4.74698 4.81237 4.83472 4.85065 4.86159 4.98768 5.02452 5.08081 5.12866 5.13874 5.19265 5.25668 5.28021 5.33826 5.51605 5.53590 5.73581 6.24518 6.36837 6.87966 7.04433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.323 6.323 3 C -0.062 4.062 4 C -0.088 4.088 5 H 0.100 0.900 6 C -0.118 4.118 7 C 0.110 3.890 8 H 0.086 0.914 9 N -0.694 5.694 10 C 0.559 3.441 11 O -0.580 6.580 12 C -0.156 4.156 13 C -0.053 4.053 14 C -0.114 4.114 15 C 0.097 3.903 16 O -0.323 6.323 17 C 0.123 3.877 18 C -0.142 4.142 19 C -0.051 4.051 20 C -0.087 4.087 21 O -0.564 6.564 22 Si 0.786 3.214 23 C -0.183 4.183 24 C -0.074 4.074 25 C -0.208 4.208 26 C -0.068 4.068 27 C -0.124 4.124 28 C -0.067 4.067 29 C -0.142 4.142 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.415 0.585 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.404 0.596 44 H -0.287 1.287 45 H -0.294 1.294 46 H 0.121 0.879 47 H 0.154 0.846 48 H 0.154 0.846 49 H 0.150 0.850 50 H 0.165 0.835 51 H 0.158 0.842 52 H 0.096 0.904 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 0.821 -4.755 5.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.098 6.098 3 C -0.210 4.210 4 C -0.107 4.107 5 H 0.118 0.882 6 C -0.158 4.158 7 C 0.004 3.996 8 H 0.105 0.895 9 N -0.345 5.345 10 C 0.348 3.652 11 O -0.461 6.461 12 C -0.159 4.159 13 C -0.072 4.072 14 C -0.114 4.114 15 C 0.023 3.977 16 O -0.237 6.237 17 C 0.078 3.922 18 C -0.161 4.161 19 C -0.051 4.051 20 C -0.196 4.196 21 O -0.374 6.374 22 Si 0.691 3.309 23 C -0.200 4.200 24 C -0.091 4.091 25 C -0.226 4.226 26 C -0.086 4.086 27 C -0.142 4.142 28 C -0.086 4.086 29 C -0.181 4.181 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.253 0.747 38 H 0.137 0.863 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.148 0.852 42 H 0.110 0.890 43 H 0.256 0.744 44 H -0.214 1.214 45 H -0.222 1.222 46 H 0.139 0.861 47 H 0.171 0.829 48 H 0.172 0.828 49 H 0.167 0.833 50 H 0.183 0.817 51 H 0.176 0.824 52 H 0.115 0.885 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.714 -0.533 -3.556 3.666 hybrid contribution -1.430 0.295 0.110 1.464 sum -2.144 -0.238 -3.445 4.065 Atomic orbital electron populations 1.23400 0.91776 1.07141 1.05727 1.87213 1.10231 1.14129 1.98188 1.23422 0.99267 0.92420 1.05877 1.22329 0.92538 0.97983 0.97846 0.88228 1.23345 0.96656 0.95935 0.99867 1.21907 0.83052 0.97295 0.97335 0.89540 1.45457 1.05570 1.60778 1.22713 1.18539 0.84402 0.77901 0.84329 1.90768 1.87443 1.45467 1.22430 1.19872 0.92730 1.05635 0.97632 1.21164 0.91434 0.95132 0.99513 1.19494 0.92979 1.02062 0.96873 1.21781 0.91547 0.84891 0.99462 1.86139 1.32281 1.39801 1.65486 1.19172 0.85562 0.94399 0.93073 1.20345 0.95915 0.96569 1.03239 1.19515 0.93930 0.95810 0.95893 1.24975 1.09420 0.95931 0.89228 1.86443 1.82653 1.47124 1.21153 0.94342 0.75627 0.85606 0.75312 1.20990 1.00794 0.96248 1.01999 1.21199 0.93976 0.95954 0.98016 1.21559 0.98507 1.01667 1.00874 1.21651 0.99998 0.94707 0.92273 1.21522 0.91263 0.99884 1.01535 1.21690 1.00495 0.93857 0.92545 1.23495 0.98456 0.98760 0.97404 0.87810 0.89790 0.89509 0.89248 0.88622 0.89029 0.87050 0.74694 0.86261 0.90217 0.88633 0.85198 0.88969 0.74449 1.21417 1.22182 0.86113 0.82875 0.82814 0.83254 0.81745 0.82445 0.88527 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 10.76 113.37 1.22 1.57 16 2 S -0.32 -0.47 22.37 -56.49 -1.26 -1.74 16 3 C -0.06 0.24 5.78 71.98 0.42 0.66 16 4 C -0.09 0.38 3.53 -10.27 -0.04 0.35 16 5 H 0.10 -0.42 8.13 -2.39 -0.02 -0.44 16 6 C -0.12 0.72 7.39 31.12 0.23 0.95 16 7 C 0.11 -0.01 4.32 45.52 0.20 0.19 16 8 H 0.09 0.40 7.46 -2.39 -0.02 0.38 16 9 N -0.69 -0.07 5.21 -442.91 -2.31 -2.38 16 10 C 0.56 4.16 7.77 86.78 0.67 4.84 16 11 O -0.58 -9.52 15.95 -3.87 -0.06 -9.58 16 12 C -0.16 -0.66 5.87 -20.09 -0.12 -0.78 16 13 C -0.05 -0.34 9.25 22.53 0.21 -0.13 16 14 C -0.11 -0.33 5.50 -19.90 -0.11 -0.43 16 15 C 0.10 0.19 4.86 71.23 0.35 0.53 16 16 O -0.32 -2.57 10.12 -92.46 -0.94 -3.51 16 17 C 0.12 1.02 6.69 22.51 0.15 1.17 16 18 C -0.14 -1.36 9.55 22.37 0.21 -1.14 16 19 C -0.05 -0.41 5.42 -19.88 -0.11 -0.52 16 20 C -0.09 -0.18 2.81 71.24 0.20 0.02 16 21 O -0.56 -1.21 12.74 -148.98 -1.90 -3.10 16 22 Si 0.79 -0.59 29.79 68.60 2.04 1.46 16 23 C -0.18 -1.32 8.67 22.28 0.19 -1.13 16 24 C -0.07 -0.33 10.04 22.25 0.22 -0.11 16 25 C -0.21 -0.94 9.04 22.37 0.20 -0.74 16 26 C -0.07 0.09 9.69 22.33 0.22 0.30 16 27 C -0.12 0.49 10.03 22.23 0.22 0.72 16 28 C -0.07 0.18 9.54 22.53 0.21 0.40 16 29 C -0.14 0.09 7.43 31.12 0.23 0.32 16 30 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H 0.09 -0.44 8.14 -2.39 -0.02 -0.45 16 33 H 0.09 -0.42 7.84 -2.39 -0.02 -0.44 16 34 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 36 H 0.11 -0.88 8.10 -2.39 -0.02 -0.90 16 37 H 0.41 -2.55 6.74 -92.71 -0.62 -3.18 16 38 H 0.12 1.11 7.65 -2.91 -0.02 1.09 16 39 H 0.08 0.04 7.59 -2.39 -0.02 0.03 16 40 H 0.10 -0.24 7.62 -2.39 -0.02 -0.25 16 41 H 0.13 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.09 -0.13 7.96 -2.39 -0.02 -0.15 16 43 H 0.40 -3.62 8.74 -74.06 -0.65 -4.27 16 44 H -0.29 -1.25 7.11 99.48 0.71 -0.55 16 45 H -0.29 -1.88 7.11 99.48 0.71 -1.17 16 46 H 0.12 0.71 4.87 -2.91 -0.01 0.69 16 47 H 0.15 -0.15 8.06 -2.91 -0.02 -0.18 16 48 H 0.15 -0.13 6.30 -2.91 -0.02 -0.15 16 49 H 0.15 -0.78 8.06 -2.91 -0.02 -0.80 16 50 H 0.17 -1.62 8.06 -2.91 -0.02 -1.64 16 51 H 0.16 -1.49 6.41 -2.91 -0.02 -1.51 16 52 H 0.10 -0.11 7.90 -2.39 -0.02 -0.13 16 53 H 0.06 0.17 8.14 -2.39 -0.02 0.16 16 Total: 0.00 -26.90 448.73 0.27 -26.63 By element: Atomic # 1 Polarization: -14.51 SS G_CDS: -0.29 Total: -14.80 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 4.99 Total: 7.03 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: -2.31 Total: -2.38 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -2.90 Total: -16.19 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: 2.04 Total: 1.46 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -1.26 Total: -1.74 kcal Total: -26.90 0.27 -26.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4549630.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.126 kcal (2) G-P(sol) polarization free energy of solvation -26.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds