Wall clock time and date at job start Tue Mar 9 2021 13:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81401 * 102.99905 * 2 1 4 4 C 1.52998 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.09004 * 112.84804 * 45.33225 * 4 3 2 6 6 C 1.53779 * 113.61408 * 176.52887 * 4 3 2 7 7 C 1.53783 * 87.07901 * 139.98433 * 6 4 3 8 8 H 1.08998 * 113.61355 * 219.93612 * 7 6 4 9 9 N 1.46505 * 113.61409 * 89.11873 * 7 6 4 10 10 C 1.34776 * 120.00041 * 155.00027 * 9 7 6 11 11 O 1.21699 * 119.99978 * 359.97438 * 10 9 7 12 12 C 1.46652 * 119.99797 * 179.97438 * 10 9 7 13 13 C 1.36552 * 125.98523 * 179.71709 * 12 10 9 14 14 C 1.50694 * 126.64427 * 359.95946 * 13 12 10 15 15 C 1.40368 * 106.70733 * 179.85036 * 13 12 10 16 16 C 1.35132 * 107.11162 * 0.40851 * 15 13 12 17 17 C 1.50698 * 125.61352 * 179.78040 * 16 15 13 18 18 O 1.42893 * 109.47338 * 89.98372 * 17 16 15 19 19 C 1.35902 * 117.00336 * 179.97438 * 18 17 16 20 20 C 1.38726 * 120.05324 * 359.73118 * 19 18 17 21 21 C 1.38144 * 119.94144 * 179.74447 * 20 19 18 22 22 C 1.38264 * 120.05905 * 0.49874 * 21 20 19 23 23 C 1.50703 * 119.94740 * 179.74483 * 22 21 20 24 24 O 1.42898 * 109.47117 * 245.02429 * 23 22 21 25 25 Si 1.86300 * 109.47113 * 5.02705 * 23 22 21 26 26 C 1.38267 * 120.10707 * 359.77578 * 22 21 20 27 27 C 1.38143 * 120.05750 * 359.96947 * 26 22 21 28 28 O 1.33934 * 108.77117 * 359.74812 * 16 15 13 29 29 C 1.53780 * 113.61735 * 274.14072 * 4 3 2 30 30 H 1.09001 * 109.47190 * 59.99775 * 1 2 3 31 31 H 1.09004 * 109.47089 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47568 * 299.99918 * 1 2 3 33 33 H 1.08995 * 109.47155 * 300.00240 * 3 2 1 34 34 H 1.09002 * 109.46779 * 60.00291 * 3 2 1 35 35 H 1.09003 * 113.61662 * 254.53222 * 6 4 3 36 36 H 1.08996 * 113.61649 * 25.43718 * 6 4 3 37 37 H 0.97002 * 120.00004 * 334.99607 * 9 7 6 38 38 H 1.09001 * 109.47731 * 90.00498 * 14 13 12 39 39 H 1.09001 * 109.46912 * 210.00334 * 14 13 12 40 40 H 1.08997 * 109.47510 * 329.99881 * 14 13 12 41 41 H 1.07994 * 126.44404 * 180.14770 * 15 13 12 42 42 H 1.08999 * 109.47210 * 209.98263 * 17 16 15 43 43 H 1.09007 * 109.47361 * 329.97945 * 17 16 15 44 44 H 1.08004 * 120.03292 * 359.97438 * 20 19 18 45 45 H 1.08003 * 119.97367 * 180.22915 * 21 20 19 46 46 H 1.09006 * 109.46611 * 125.02580 * 23 22 21 47 47 H 0.96700 * 113.99502 * 180.02562 * 24 23 22 48 48 H 1.48500 * 109.99962 * 299.99810 * 25 23 22 49 49 H 1.48505 * 109.99768 * 61.31539 * 25 23 22 50 50 H 1.08010 * 119.97157 * 179.97438 * 26 22 21 51 51 H 1.08000 * 120.02500 * 179.97438 * 27 26 22 52 52 H 1.09000 * 113.61204 * 334.56064 * 29 4 3 53 53 H 1.09003 * 113.61625 * 105.46862 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.2427 1.2860 -0.7135 6 6 4.1958 3.4069 -0.0846 7 6 5.2894 3.0458 0.9345 8 1 5.4564 3.8164 1.6871 9 7 6.5320 2.5729 0.3191 10 6 7.7006 2.6970 0.9790 11 8 7.7237 3.2023 2.0859 12 6 8.9443 2.2231 0.3632 13 6 10.1908 2.2923 0.9165 14 6 10.5461 2.8660 2.2639 15 6 11.0766 1.7231 -0.0118 16 6 10.3425 1.3447 -1.0814 17 6 10.8803 0.6890 -2.3271 18 8 10.8637 -0.7304 -2.1635 19 6 11.3193 -1.4769 -3.2037 20 6 11.7679 -0.8560 -4.3604 21 6 12.2355 -1.6168 -5.4144 22 6 12.2470 -2.9963 -5.3212 23 6 12.7523 -3.8240 -6.4748 24 8 11.6791 -4.6015 -7.0093 25 14 13.4239 -2.6989 -7.7992 26 6 11.7952 -3.6176 -4.1717 27 6 11.3315 -2.8612 -3.1128 28 8 9.0583 1.6476 -0.8517 29 6 4.3653 1.9085 1.4062 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8031 2.2371 -0.8899 34 1 1.8031 2.2371 0.8900 35 1 4.5861 3.6871 -1.0630 36 1 3.4598 4.1144 0.2971 37 1 6.5136 2.1704 -0.5633 38 1 10.4923 2.0815 3.0187 39 1 11.5579 3.2701 2.2314 40 1 9.8452 3.6617 2.5163 41 1 12.1445 1.6127 0.1049 42 1 10.2590 0.9637 -3.1795 43 1 11.9034 1.0228 -2.5007 44 1 11.7550 0.2213 -4.4354 45 1 12.5883 -1.1339 -6.3137 46 1 13.5436 -4.4879 -6.1264 47 1 11.9326 -5.1604 -7.7566 48 1 12.3547 -1.7887 -8.2825 49 1 14.5613 -1.9078 -7.2648 50 1 11.8048 -4.6954 -4.1014 51 1 10.9783 -3.3470 -2.2153 52 1 3.6756 2.2057 2.1962 53 1 4.8921 0.9808 1.6297 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_4549632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:47 Heat of formation + Delta-G solvation = -28.366635 kcal Electronic energy + Delta-G solvation = -34311.744780 eV Core-core repulsion = 29630.592723 eV Total energy + Delta-G solvation = -4681.152057 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.154 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -44.01976 -41.45001 -41.29371 -39.54369 -39.21607 -37.25128 -35.57513 -34.68370 -33.31658 -32.21918 -31.73316 -30.75684 -29.71381 -28.94115 -28.19478 -26.77909 -26.21274 -24.58465 -23.96440 -22.99046 -22.63984 -22.21550 -20.96113 -20.33249 -19.61591 -19.41115 -18.37209 -17.88162 -17.55781 -17.47779 -17.18260 -16.95840 -16.78816 -16.53962 -16.14470 -16.06419 -15.78925 -15.52225 -15.36920 -15.29617 -15.09757 -14.77599 -14.54512 -14.44801 -14.29446 -14.16033 -14.03812 -13.95758 -13.91961 -13.77223 -13.68033 -13.62604 -13.42233 -13.37476 -12.92188 -12.88074 -12.51990 -12.26142 -12.15629 -12.02409 -11.87998 -11.59205 -11.39869 -11.30402 -10.91910 -10.87799 -10.36498 -10.28282 -10.18625 -9.78898 -9.35699 -8.73863 -4.93153 -0.34775 0.11267 0.16498 0.70694 0.88185 1.27124 1.32073 1.64811 1.65144 1.85555 1.89170 1.96643 2.26062 2.49649 3.19167 3.36167 3.43164 3.49613 3.55409 3.56548 3.58148 3.67458 3.72972 3.74383 3.88919 3.94501 3.98448 4.14150 4.21915 4.22699 4.27776 4.30033 4.31269 4.36594 4.38673 4.41683 4.45620 4.53371 4.59353 4.65104 4.68783 4.71980 4.76248 4.80716 4.84032 4.91018 4.95170 4.97635 4.99860 5.02896 5.07135 5.08673 5.26951 5.36604 5.44351 5.55258 5.61161 6.14536 6.22950 6.82814 6.92717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.329 6.329 3 C -0.060 4.060 4 C -0.092 4.092 5 H 0.090 0.910 6 C -0.117 4.117 7 C 0.111 3.889 8 H 0.100 0.900 9 N -0.693 5.693 10 C 0.605 3.395 11 O -0.542 6.542 12 C -0.094 4.094 13 C -0.093 4.093 14 C -0.095 4.095 15 C -0.184 4.184 16 C 0.009 3.991 17 C 0.135 3.865 18 O -0.322 6.322 19 C 0.126 3.874 20 C -0.203 4.203 21 C -0.099 4.099 22 C -0.128 4.128 23 C -0.075 4.075 24 O -0.566 6.566 25 Si 0.770 3.230 26 C -0.056 4.056 27 C -0.156 4.156 28 O -0.162 6.162 29 C -0.141 4.141 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.413 0.587 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.184 0.816 42 H 0.099 0.901 43 H 0.129 0.871 44 H 0.156 0.844 45 H 0.123 0.877 46 H 0.094 0.906 47 H 0.403 0.597 48 H -0.296 1.296 49 H -0.287 1.287 50 H 0.148 0.852 51 H 0.142 0.858 52 H 0.104 0.896 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -0.007 -5.777 5.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.104 6.104 3 C -0.208 4.208 4 C -0.111 4.111 5 H 0.108 0.892 6 C -0.157 4.157 7 C 0.006 3.994 8 H 0.118 0.882 9 N -0.343 5.343 10 C 0.393 3.607 11 O -0.421 6.421 12 C -0.146 4.146 13 C -0.096 4.096 14 C -0.151 4.151 15 C -0.203 4.203 16 C -0.043 4.043 17 C 0.061 3.939 18 O -0.237 6.237 19 C 0.081 3.919 20 C -0.221 4.221 21 C -0.117 4.117 22 C -0.129 4.129 23 C -0.185 4.185 24 O -0.375 6.375 25 Si 0.677 3.323 26 C -0.074 4.074 27 C -0.175 4.175 28 O -0.058 6.058 29 C -0.180 4.180 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.250 0.750 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.202 0.798 42 H 0.117 0.883 43 H 0.147 0.853 44 H 0.173 0.827 45 H 0.140 0.860 46 H 0.111 0.889 47 H 0.254 0.746 48 H -0.224 1.224 49 H -0.215 1.215 50 H 0.165 0.835 51 H 0.160 0.840 52 H 0.122 0.878 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.500 0.477 -4.778 5.031 hybrid contribution -0.985 0.739 0.224 1.251 sum 0.516 1.216 -4.555 4.742 Atomic orbital electron populations 1.23397 0.91519 1.07155 1.05798 1.87302 1.10485 1.14368 1.98203 1.23413 0.99052 0.92285 1.06033 1.22328 0.92707 0.98049 0.98050 0.89166 1.23349 0.96718 0.95759 0.99854 1.22032 0.82483 0.97514 0.97332 0.88218 1.45542 1.05818 1.61570 1.21390 1.16570 0.81684 0.78135 0.84343 1.90854 1.85832 1.45770 1.19669 1.21883 0.96494 1.09722 0.86529 1.20989 0.91063 0.98704 0.98856 1.20463 1.03153 1.01141 0.90338 1.21896 1.02586 1.03496 0.92315 1.22335 0.80945 1.02266 0.98751 1.21233 1.03108 0.77712 0.91853 1.86114 1.80145 1.18732 1.38688 1.19043 0.94801 0.91335 0.86734 1.21377 1.05530 1.01678 0.93554 1.20876 0.98900 0.93657 0.98255 1.19666 1.03528 0.93300 0.96378 1.24772 0.93293 1.00666 0.99798 1.86447 1.35695 1.61455 1.53951 0.94351 0.76456 0.79076 0.82448 1.21038 0.94496 1.00883 0.90981 1.20742 1.04785 0.90737 1.01233 1.83961 1.28909 1.60895 1.32065 1.23527 0.98455 0.98578 0.97402 0.89536 0.87835 0.89567 0.88706 0.88762 0.89465 0.86372 0.75036 0.90431 0.89113 0.90869 0.79818 0.88276 0.85345 0.82690 0.85984 0.88862 0.74624 1.22447 1.21463 0.83462 0.84043 0.87809 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.22 10.76 113.37 1.22 1.44 16 2 S -0.33 -1.08 22.38 -56.49 -1.26 -2.35 16 3 C -0.06 0.15 5.77 71.98 0.41 0.57 16 4 C -0.09 0.21 3.52 -10.27 -0.04 0.18 16 5 H 0.09 -0.03 8.14 -2.38 -0.02 -0.05 16 6 C -0.12 0.59 7.39 31.12 0.23 0.82 16 7 C 0.11 0.04 4.33 45.58 0.20 0.24 16 8 H 0.10 0.28 7.46 -2.39 -0.02 0.26 16 9 N -0.69 -1.90 5.26 -443.73 -2.33 -4.23 16 10 C 0.61 5.12 7.79 86.44 0.67 5.79 16 11 O -0.54 -7.36 14.34 -4.34 -0.06 -7.43 16 12 C -0.09 -0.72 7.13 24.07 0.17 -0.55 16 13 C -0.09 -0.57 6.20 -19.74 -0.12 -0.70 16 14 C -0.09 -0.39 9.81 71.23 0.70 0.31 16 15 C -0.18 -0.44 10.73 22.07 0.24 -0.20 16 16 C 0.01 0.03 6.94 24.97 0.17 0.20 16 17 C 0.13 -0.20 5.27 71.24 0.38 0.17 16 18 O -0.32 -1.39 10.12 -92.45 -0.94 -2.33 16 19 C 0.13 0.56 6.69 22.50 0.15 0.71 16 20 C -0.20 -0.49 9.04 22.36 0.20 -0.29 16 21 C -0.10 -0.44 8.66 22.25 0.19 -0.24 16 22 C -0.13 -0.55 5.39 -19.85 -0.11 -0.66 16 23 C -0.08 0.07 2.79 71.24 0.20 0.27 16 24 O -0.57 0.23 12.81 -148.98 -1.91 -1.68 16 25 Si 0.77 -2.00 29.85 68.60 2.05 0.05 16 26 C -0.06 -0.22 9.68 22.25 0.22 0.00 16 27 C -0.16 -0.72 9.99 22.37 0.22 -0.50 16 28 O -0.16 -0.94 10.40 -5.04 -0.05 -0.99 16 29 C -0.14 -0.04 7.44 31.18 0.23 0.19 16 30 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.09 -0.41 7.87 -2.39 -0.02 -0.42 16 35 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 36 H 0.12 -0.94 8.10 -2.39 -0.02 -0.96 16 37 H 0.41 -0.11 8.46 -92.71 -0.78 -0.90 16 38 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.07 0.55 6.45 -2.39 -0.02 0.54 16 41 H 0.18 -0.56 8.06 -2.91 -0.02 -0.59 16 42 H 0.10 -0.42 7.65 -2.39 -0.02 -0.44 16 43 H 0.13 -0.91 7.68 -2.38 -0.02 -0.93 16 44 H 0.16 -0.53 6.30 -2.91 -0.02 -0.55 16 45 H 0.12 0.40 4.86 -2.91 -0.01 0.38 16 46 H 0.09 -0.47 7.96 -2.38 -0.02 -0.49 16 47 H 0.40 -4.40 8.74 -74.06 -0.65 -5.05 16 48 H -0.30 -1.41 7.05 99.48 0.70 -0.71 16 49 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 50 H 0.15 0.09 8.06 -2.91 -0.02 0.06 16 51 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 52 H 0.10 -0.14 7.92 -2.39 -0.02 -0.16 16 53 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 Total: 0.00 -22.92 451.49 0.59 -22.33 By element: Atomic # 1 Polarization: -10.68 SS G_CDS: -0.45 Total: -11.13 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 5.54 Total: 7.74 kcal Atomic # 7 Polarization: -1.90 SS G_CDS: -2.33 Total: -4.23 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -2.96 Total: -12.42 kcal Atomic # 14 Polarization: -2.00 SS G_CDS: 2.05 Total: 0.05 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -1.26 Total: -2.35 kcal Total: -22.92 0.59 -22.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4549632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.036 kcal (2) G-P(sol) polarization free energy of solvation -22.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds