Wall clock time and date at job start Tue Mar 9 2021 13:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81404 * 102.99959 * 2 1 4 4 C 1.52997 * 109.46916 * 179.97438 * 3 2 1 5 5 H 1.08994 * 112.85191 * 43.80770 * 4 3 2 6 6 C 1.53780 * 113.61204 * 175.00047 * 4 3 2 7 7 C 1.53785 * 87.08174 * 139.98150 * 6 4 3 8 8 H 1.09000 * 113.61485 * 219.93822 * 7 6 4 9 9 N 1.46501 * 113.61351 * 89.11451 * 7 6 4 10 10 C 1.34778 * 119.99698 * 155.00108 * 9 7 6 11 11 O 1.21611 * 120.00108 * 359.97438 * 10 9 7 12 12 C 1.47372 * 119.99756 * 180.02562 * 10 9 7 13 13 C 1.36425 * 127.19341 * 179.97438 * 12 10 9 14 14 C 1.50705 * 125.79769 * 359.97438 * 13 12 10 15 15 O 1.42900 * 109.47259 * 89.71644 * 14 13 12 16 16 C 1.35899 * 116.99982 * 179.97438 * 15 14 13 17 17 C 1.38729 * 120.05294 * 180.02562 * 16 15 14 18 18 C 1.38146 * 119.94031 * 179.97438 * 17 16 15 19 19 C 1.38263 * 120.05914 * 359.97438 * 18 17 16 20 20 C 1.50697 * 119.94583 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.47590 * 300.00259 * 20 19 18 22 22 Si 1.86300 * 109.47007 * 179.97438 * 20 19 18 23 23 C 1.38271 * 120.10967 * 0.27730 * 19 18 17 24 24 C 1.38148 * 120.05274 * 359.44682 * 23 19 18 25 25 O 1.33649 * 108.39491 * 179.73671 * 13 12 10 26 26 C 1.34210 * 110.91211 * 0.25982 * 25 13 12 27 27 C 1.34175 * 109.12494 * 0.02562 * 26 25 13 28 28 C 1.53783 * 113.61444 * 272.49730 * 4 3 2 29 29 H 1.09006 * 109.47676 * 299.99978 * 1 2 3 30 30 H 1.09007 * 109.47321 * 60.00225 * 1 2 3 31 31 H 1.09004 * 109.47353 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46835 * 59.99950 * 3 2 1 33 33 H 1.08995 * 109.47007 * 300.00229 * 3 2 1 34 34 H 1.09000 * 113.61492 * 25.43222 * 6 4 3 35 35 H 1.09002 * 113.69361 * 254.54155 * 6 4 3 36 36 H 0.96996 * 120.00240 * 335.00401 * 9 7 6 37 37 H 1.09003 * 109.46942 * 329.71158 * 14 13 12 38 38 H 1.08997 * 109.46856 * 209.71833 * 14 13 12 39 39 H 1.08002 * 120.03363 * 359.97438 * 17 16 15 40 40 H 1.07997 * 119.97046 * 180.02562 * 18 17 16 41 41 H 1.09001 * 109.46613 * 60.00397 * 20 19 18 42 42 H 0.96695 * 114.00385 * 180.02562 * 21 20 19 43 43 H 1.48506 * 110.00048 * 60.00676 * 22 20 19 44 44 H 1.48502 * 109.99996 * 181.32001 * 22 20 19 45 45 H 1.07996 * 119.97194 * 179.72944 * 23 19 18 46 46 H 1.07999 * 120.02648 * 180.26899 * 24 23 19 47 47 H 1.08003 * 125.43561 * 180.02562 * 26 25 13 48 48 H 1.07998 * 127.02487 * 180.02562 * 27 26 25 49 49 H 1.09000 * 113.61555 * 105.47481 * 28 4 3 50 50 H 1.09003 * 113.61296 * 334.56706 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9399 0.0006 5 1 4.2448 1.2673 -0.6944 6 6 4.1962 3.4041 -0.1221 7 6 5.2867 3.0703 0.9096 8 1 5.4514 3.8605 1.6420 9 7 6.5310 2.5811 0.3107 10 6 7.6976 2.7227 0.9707 11 8 7.7173 3.2569 2.0630 12 6 8.9494 2.2312 0.3681 13 6 10.2033 2.2977 0.9016 14 6 10.5626 2.8981 2.2364 15 8 10.4826 1.8922 3.2482 16 6 10.7788 2.2709 4.5194 17 6 10.7220 1.3452 5.5511 18 6 11.0240 1.7325 6.8423 19 6 11.3832 3.0412 7.1067 20 6 11.7116 3.4611 8.5162 21 8 10.5777 3.2371 9.3565 22 14 12.1538 5.2707 8.5381 23 6 11.4355 3.9669 6.0809 24 6 11.1399 3.5833 4.7871 25 8 11.0579 1.7352 0.0417 26 6 10.4174 1.2988 -1.0539 27 6 9.1087 1.5700 -0.9354 28 6 4.3606 1.9485 1.4086 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8030 2.2371 0.8900 33 1 1.8031 2.2371 -0.8899 34 1 3.4589 4.1215 0.2384 35 1 4.5895 3.6597 -1.1060 36 1 6.5154 2.1554 -0.5607 37 1 9.8682 3.7051 2.4705 38 1 11.5778 3.2927 2.1958 39 1 10.4418 0.3227 5.3451 40 1 10.9803 1.0122 7.6458 41 1 12.5559 2.8767 8.8819 42 1 10.7175 3.4859 10.2804 43 1 11.0111 6.0788 8.0414 44 1 12.5106 5.6898 9.9173 45 1 11.7121 4.9896 6.2906 46 1 11.1852 4.3057 3.9855 47 1 10.8813 0.8077 -1.8966 48 1 8.3304 1.3439 -1.6492 49 1 4.8867 1.0276 1.6601 50 1 3.6684 2.2680 2.1876 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_4549634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:53 Heat of formation + Delta-G solvation = -27.113948 kcal Electronic energy + Delta-G solvation = -32857.301976 eV Core-core repulsion = 28331.741858 eV Total energy + Delta-G solvation = -4525.560117 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.138 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.71991 -41.21145 -41.09868 -39.34490 -38.98172 -37.26374 -34.80178 -33.88012 -32.80665 -31.85544 -31.37819 -30.69670 -29.74578 -27.86161 -26.81028 -26.05950 -25.09501 -23.72382 -23.60137 -22.37722 -22.02257 -20.99054 -20.23639 -19.32970 -19.18850 -18.45484 -17.65144 -17.36680 -17.16816 -16.99168 -16.82175 -16.64728 -16.58196 -16.09231 -15.99342 -15.68317 -15.60082 -15.30299 -15.23118 -15.05299 -14.67474 -14.41628 -14.35648 -14.17992 -14.06619 -13.95755 -13.88186 -13.71805 -13.65817 -13.39903 -13.27078 -13.05946 -12.90198 -12.38147 -12.17469 -12.02101 -11.79931 -11.61437 -11.58571 -11.30099 -10.98205 -10.94456 -10.92444 -10.41893 -10.10442 -9.87911 -9.83891 -9.04380 -8.65472 -4.92052 0.05869 0.44152 0.46900 0.67631 0.94481 1.34843 1.51453 1.60755 1.64182 2.01534 2.07990 2.19559 2.56736 2.76513 3.31710 3.34591 3.43582 3.45093 3.60315 3.63929 3.67911 3.76886 3.83140 3.91576 3.97243 4.05237 4.15299 4.15758 4.19665 4.21078 4.29969 4.34202 4.38758 4.43154 4.48308 4.52892 4.59544 4.62111 4.65201 4.73947 4.75617 4.79859 4.80680 4.95715 5.01511 5.09086 5.09737 5.12445 5.30792 5.41068 5.54576 5.65117 5.82641 5.86935 6.42259 6.45356 6.51640 7.19462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.264 6.264 3 C -0.075 4.075 4 C -0.096 4.096 5 H 0.098 0.902 6 C -0.135 4.135 7 C 0.121 3.879 8 H 0.108 0.892 9 N -0.705 5.705 10 C 0.592 3.408 11 O -0.530 6.530 12 C -0.211 4.211 13 C 0.066 3.934 14 C 0.135 3.865 15 O -0.303 6.303 16 C 0.142 3.858 17 C -0.148 4.148 18 C -0.050 4.050 19 C -0.112 4.112 20 C -0.070 4.070 21 O -0.536 6.536 22 Si 0.678 3.322 23 C -0.072 4.072 24 C -0.201 4.201 25 O -0.164 6.164 26 C -0.014 4.014 27 C -0.196 4.196 28 C -0.143 4.143 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.402 0.598 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.378 0.622 43 H -0.255 1.255 44 H -0.262 1.262 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.214 0.786 48 H 0.161 0.839 49 H 0.076 0.924 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 1.316 -4.547 4.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.038 6.038 3 C -0.223 4.223 4 C -0.115 4.115 5 H 0.116 0.884 6 C -0.175 4.175 7 C 0.015 3.985 8 H 0.126 0.874 9 N -0.355 5.355 10 C 0.380 3.620 11 O -0.408 6.408 12 C -0.215 4.215 13 C 0.013 3.987 14 C 0.061 3.939 15 O -0.217 6.217 16 C 0.097 3.903 17 C -0.167 4.167 18 C -0.069 4.069 19 C -0.113 4.113 20 C -0.180 4.180 21 O -0.343 6.343 22 Si 0.580 3.420 23 C -0.090 4.090 24 C -0.220 4.220 25 O -0.060 6.060 26 C -0.081 4.081 27 C -0.215 4.215 28 C -0.181 4.181 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.237 0.763 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.093 0.907 42 H 0.226 0.774 43 H -0.180 1.180 44 H -0.187 1.187 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.231 0.769 48 H 0.179 0.821 49 H 0.095 0.905 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.326 1.194 -4.040 4.417 hybrid contribution -1.757 0.389 0.211 1.812 sum -0.432 1.583 -3.830 4.166 Atomic orbital electron populations 1.23396 0.94052 1.06728 1.04935 1.87043 1.07499 1.11239 1.98046 1.23428 0.99315 0.94565 1.05024 1.22383 0.92607 0.97473 0.99026 0.88354 1.23401 0.97807 0.96264 1.00034 1.21821 0.82648 0.97526 0.96460 0.87439 1.45408 1.06028 1.61656 1.22454 1.17166 0.82374 0.78151 0.84286 1.90809 1.86523 1.43528 1.19924 1.21194 0.93567 1.09214 0.97567 1.21962 0.87196 0.97697 0.91852 1.21110 1.03393 0.89726 0.79711 1.86085 1.84263 1.37245 1.14125 1.18937 0.94738 0.93075 0.83562 1.20466 1.05620 0.99745 0.90855 1.20786 0.95126 0.95509 0.95430 1.19138 1.04778 0.94289 0.93071 1.24717 0.91088 1.12095 0.90070 1.86601 1.37684 1.86971 1.23090 0.95196 0.87568 0.74963 0.84312 1.20704 0.97730 0.98454 0.92089 1.21144 1.07417 0.95289 0.98138 1.83798 1.38340 1.58239 1.25579 1.24057 0.92061 1.01766 0.90215 1.22890 0.97381 1.04203 0.97049 1.23507 0.98482 0.99857 0.96277 0.90439 0.90478 0.87975 0.89810 0.89848 0.88260 0.90341 0.76336 0.86691 0.89744 0.84877 0.85015 0.90686 0.77390 1.17987 1.18722 0.85296 0.84935 0.76905 0.82117 0.90523 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.13 10.76 101.05 1.09 1.21 16 2 S -0.26 -0.28 22.37 -107.50 -2.40 -2.68 16 3 C -0.08 0.09 5.78 37.16 0.21 0.30 16 4 C -0.10 0.15 3.53 -89.81 -0.32 -0.17 16 5 H 0.10 -0.12 8.13 -51.93 -0.42 -0.55 16 6 C -0.14 0.32 7.39 -25.92 -0.19 0.13 16 7 C 0.12 -0.02 4.32 -67.11 -0.29 -0.31 16 8 H 0.11 0.15 7.46 -51.93 -0.39 -0.24 16 9 N -0.70 -0.06 5.26 -54.10 -0.28 -0.35 16 10 C 0.59 1.79 7.81 -12.54 -0.10 1.69 16 11 O -0.53 -3.26 14.45 5.27 0.08 -3.18 16 12 C -0.21 -0.42 6.31 -103.27 -0.65 -1.07 16 13 C 0.07 0.16 7.00 -34.96 -0.24 -0.09 16 14 C 0.14 0.28 4.73 36.01 0.17 0.45 16 15 O -0.30 -1.30 10.12 -19.42 -0.20 -1.49 16 16 C 0.14 0.53 6.69 -39.22 -0.26 0.27 16 17 C -0.15 -0.50 9.99 -39.43 -0.39 -0.90 16 18 C -0.05 -0.14 9.60 -39.61 -0.38 -0.52 16 19 C -0.11 -0.29 5.42 -104.60 -0.57 -0.86 16 20 C -0.07 -0.07 2.81 36.00 0.10 0.03 16 21 O -0.54 -1.20 12.74 -35.23 -0.45 -1.65 16 22 Si 0.68 0.00 29.78 -169.99 -5.06 -5.06 16 23 C -0.07 -0.14 8.66 -39.60 -0.34 -0.48 16 24 C -0.20 -0.46 9.04 -39.43 -0.36 -0.82 16 25 O -0.16 -0.24 10.52 7.67 0.08 -0.16 16 26 C -0.01 0.02 12.03 29.30 0.35 0.37 16 27 C -0.20 0.18 10.60 -37.45 -0.40 -0.22 16 28 C -0.14 0.03 7.43 -25.92 -0.19 -0.17 16 29 H 0.08 -0.12 8.14 -51.92 -0.42 -0.55 16 30 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 31 H 0.10 -0.14 8.14 -51.92 -0.42 -0.57 16 32 H 0.08 -0.13 7.84 -51.92 -0.41 -0.54 16 33 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 34 H 0.10 -0.30 8.10 -51.93 -0.42 -0.72 16 35 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 36 H 0.40 -0.90 7.87 -40.82 -0.32 -1.22 16 37 H 0.12 0.28 6.02 -51.93 -0.31 -0.04 16 38 H 0.08 -0.03 7.66 -51.93 -0.40 -0.43 16 39 H 0.13 0.32 8.06 -52.49 -0.42 -0.11 16 40 H 0.13 0.21 8.06 -52.49 -0.42 -0.21 16 41 H 0.08 -0.06 7.96 -51.93 -0.41 -0.48 16 42 H 0.38 -0.70 8.74 45.56 0.40 -0.30 16 43 H -0.26 -0.84 7.11 56.52 0.40 -0.44 16 44 H -0.26 -0.49 7.11 56.52 0.40 -0.09 16 45 H 0.13 -0.02 4.87 -52.49 -0.26 -0.27 16 46 H 0.13 0.01 6.30 -52.49 -0.33 -0.32 16 47 H 0.21 -1.11 8.06 -52.48 -0.42 -1.53 16 48 H 0.16 -0.61 7.74 -52.49 -0.41 -1.02 16 49 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 50 H 0.09 -0.04 7.90 -51.93 -0.41 -0.45 16 LS Contribution 429.00 15.07 6.46 6.46 Total: 0.00 -9.79 429.00 -11.63 -21.41 By element: Atomic # 1 Polarization: -5.08 SS G_CDS: -7.09 Total: -12.16 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.76 Total: -1.14 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -0.28 Total: -0.35 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.49 Total: -6.48 kcal Atomic # 14 Polarization: 0.00 SS G_CDS: -5.06 Total: -5.06 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.40 Total: -2.68 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -9.79 -11.63 -21.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4549634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.700 kcal (2) G-P(sol) polarization free energy of solvation -9.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds