Wall clock time and date at job start Tue Mar 9 2021 13:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81404 * 102.99959 * 2 1 4 4 C 1.52997 * 109.46916 * 179.97438 * 3 2 1 5 5 H 1.08994 * 112.85191 * 43.80770 * 4 3 2 6 6 C 1.53780 * 113.61204 * 175.00047 * 4 3 2 7 7 C 1.53785 * 87.08174 * 139.98150 * 6 4 3 8 8 H 1.09000 * 113.61485 * 219.93822 * 7 6 4 9 9 N 1.46501 * 113.61351 * 89.11451 * 7 6 4 10 10 C 1.34778 * 119.99698 * 155.00108 * 9 7 6 11 11 O 1.21611 * 120.00108 * 359.97438 * 10 9 7 12 12 C 1.47372 * 119.99756 * 180.02562 * 10 9 7 13 13 C 1.36425 * 127.19341 * 179.97438 * 12 10 9 14 14 C 1.50705 * 125.79769 * 359.97438 * 13 12 10 15 15 O 1.42900 * 109.47259 * 89.71644 * 14 13 12 16 16 C 1.35899 * 116.99982 * 179.97438 * 15 14 13 17 17 C 1.38729 * 120.05294 * 180.02562 * 16 15 14 18 18 C 1.38146 * 119.94031 * 179.97438 * 17 16 15 19 19 C 1.38263 * 120.05914 * 359.97438 * 18 17 16 20 20 C 1.50697 * 119.94583 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.47590 * 300.00259 * 20 19 18 22 22 Si 1.86300 * 109.47007 * 179.97438 * 20 19 18 23 23 C 1.38271 * 120.10967 * 0.27730 * 19 18 17 24 24 C 1.38148 * 120.05274 * 359.44682 * 23 19 18 25 25 O 1.33649 * 108.39491 * 179.73671 * 13 12 10 26 26 C 1.34210 * 110.91211 * 0.25982 * 25 13 12 27 27 C 1.34175 * 109.12494 * 0.02562 * 26 25 13 28 28 C 1.53783 * 113.61444 * 272.49730 * 4 3 2 29 29 H 1.09006 * 109.47676 * 299.99978 * 1 2 3 30 30 H 1.09007 * 109.47321 * 60.00225 * 1 2 3 31 31 H 1.09004 * 109.47353 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46835 * 59.99950 * 3 2 1 33 33 H 1.08995 * 109.47007 * 300.00229 * 3 2 1 34 34 H 1.09000 * 113.61492 * 25.43222 * 6 4 3 35 35 H 1.09002 * 113.69361 * 254.54155 * 6 4 3 36 36 H 0.96996 * 120.00240 * 335.00401 * 9 7 6 37 37 H 1.09003 * 109.46942 * 329.71158 * 14 13 12 38 38 H 1.08997 * 109.46856 * 209.71833 * 14 13 12 39 39 H 1.08002 * 120.03363 * 359.97438 * 17 16 15 40 40 H 1.07997 * 119.97046 * 180.02562 * 18 17 16 41 41 H 1.09001 * 109.46613 * 60.00397 * 20 19 18 42 42 H 0.96695 * 114.00385 * 180.02562 * 21 20 19 43 43 H 1.48506 * 110.00048 * 60.00676 * 22 20 19 44 44 H 1.48502 * 109.99996 * 181.32001 * 22 20 19 45 45 H 1.07996 * 119.97194 * 179.72944 * 23 19 18 46 46 H 1.07999 * 120.02648 * 180.26899 * 24 23 19 47 47 H 1.08003 * 125.43561 * 180.02562 * 26 25 13 48 48 H 1.07998 * 127.02487 * 180.02562 * 27 26 25 49 49 H 1.09000 * 113.61555 * 105.47481 * 28 4 3 50 50 H 1.09003 * 113.61296 * 334.56706 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9399 0.0006 5 1 4.2448 1.2673 -0.6944 6 6 4.1962 3.4041 -0.1221 7 6 5.2867 3.0703 0.9096 8 1 5.4514 3.8605 1.6420 9 7 6.5310 2.5811 0.3107 10 6 7.6976 2.7227 0.9707 11 8 7.7173 3.2569 2.0630 12 6 8.9494 2.2312 0.3681 13 6 10.2033 2.2977 0.9016 14 6 10.5626 2.8981 2.2364 15 8 10.4826 1.8922 3.2482 16 6 10.7788 2.2709 4.5194 17 6 10.7220 1.3452 5.5511 18 6 11.0240 1.7325 6.8423 19 6 11.3832 3.0412 7.1067 20 6 11.7116 3.4611 8.5162 21 8 10.5777 3.2371 9.3565 22 14 12.1538 5.2707 8.5381 23 6 11.4355 3.9669 6.0809 24 6 11.1399 3.5833 4.7871 25 8 11.0579 1.7352 0.0417 26 6 10.4174 1.2988 -1.0539 27 6 9.1087 1.5700 -0.9354 28 6 4.3606 1.9485 1.4086 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8030 2.2371 0.8900 33 1 1.8031 2.2371 -0.8899 34 1 3.4589 4.1215 0.2384 35 1 4.5895 3.6597 -1.1060 36 1 6.5154 2.1554 -0.5607 37 1 9.8682 3.7051 2.4705 38 1 11.5778 3.2927 2.1958 39 1 10.4418 0.3227 5.3451 40 1 10.9803 1.0122 7.6458 41 1 12.5559 2.8767 8.8819 42 1 10.7175 3.4859 10.2804 43 1 11.0111 6.0788 8.0414 44 1 12.5106 5.6898 9.9173 45 1 11.7121 4.9896 6.2906 46 1 11.1852 4.3057 3.9855 47 1 10.8813 0.8077 -1.8966 48 1 8.3304 1.3439 -1.6492 49 1 4.8867 1.0276 1.6601 50 1 3.6684 2.2680 2.1876 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_4549634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:51 Heat of formation + Delta-G solvation = -25.504686 kcal Electronic energy + Delta-G solvation = -32857.232193 eV Core-core repulsion = 28331.741858 eV Total energy + Delta-G solvation = -4525.490334 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.138 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.73081 -41.31835 -41.23678 -39.46561 -39.13849 -37.39565 -34.93141 -33.90883 -32.89102 -32.00647 -31.49506 -30.65433 -29.66552 -27.92908 -26.74786 -26.17948 -25.17176 -23.85997 -23.60441 -22.40414 -22.15807 -21.07398 -20.21973 -19.50864 -19.21625 -18.55178 -17.75663 -17.40467 -17.22313 -17.08514 -16.95013 -16.78306 -16.64741 -16.12855 -16.06472 -15.74093 -15.68896 -15.39272 -15.30722 -15.03239 -14.75181 -14.52006 -14.34992 -14.26350 -14.10685 -13.96400 -13.84567 -13.81503 -13.60961 -13.41409 -13.35379 -13.15479 -12.87381 -12.53500 -12.18411 -12.11355 -11.93913 -11.77141 -11.54539 -11.26822 -11.20958 -10.98518 -10.90489 -10.49210 -10.18499 -10.06698 -9.83952 -9.24162 -8.71492 -4.93881 -0.06047 0.24503 0.28144 0.72561 1.01989 1.30476 1.49762 1.59253 1.66456 1.94965 2.00885 2.07687 2.45079 2.59331 3.32902 3.40120 3.40761 3.52579 3.56964 3.66887 3.70915 3.72844 3.80142 3.80435 3.92184 3.95197 4.10131 4.25620 4.26820 4.28776 4.31731 4.39683 4.40473 4.43521 4.45020 4.48406 4.57254 4.65897 4.72159 4.74866 4.79363 4.82555 4.85261 4.93402 4.98268 5.02445 5.12856 5.14071 5.22716 5.25908 5.46566 5.52690 5.66284 5.87427 6.24136 6.40050 6.60518 7.06950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.325 6.325 3 C -0.062 4.062 4 C -0.087 4.087 5 H 0.098 0.902 6 C -0.117 4.117 7 C 0.113 3.887 8 H 0.088 0.912 9 N -0.690 5.690 10 C 0.585 3.415 11 O -0.571 6.571 12 C -0.225 4.225 13 C 0.043 3.957 14 C 0.134 3.866 15 O -0.322 6.322 16 C 0.124 3.876 17 C -0.163 4.163 18 C -0.059 4.059 19 C -0.124 4.124 20 C -0.081 4.081 21 O -0.560 6.560 22 Si 0.762 3.238 23 C -0.078 4.078 24 C -0.204 4.204 25 O -0.175 6.175 26 C -0.010 4.010 27 C -0.198 4.198 28 C -0.144 4.144 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.415 0.585 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.097 0.903 42 H 0.394 0.606 43 H -0.302 1.302 44 H -0.283 1.283 45 H 0.148 0.852 46 H 0.150 0.850 47 H 0.253 0.747 48 H 0.191 0.809 49 H 0.055 0.945 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 1.712 -6.026 6.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.099 6.099 3 C -0.210 4.210 4 C -0.106 4.106 5 H 0.116 0.884 6 C -0.156 4.156 7 C 0.007 3.993 8 H 0.106 0.894 9 N -0.341 5.341 10 C 0.374 3.626 11 O -0.452 6.452 12 C -0.230 4.230 13 C -0.011 4.011 14 C 0.060 3.940 15 O -0.237 6.237 16 C 0.079 3.921 17 C -0.182 4.182 18 C -0.077 4.077 19 C -0.124 4.124 20 C -0.189 4.189 21 O -0.370 6.370 22 Si 0.668 3.332 23 C -0.095 4.095 24 C -0.223 4.223 25 O -0.071 6.071 26 C -0.075 4.075 27 C -0.217 4.217 28 C -0.183 4.183 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.252 0.748 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.115 0.885 42 H 0.245 0.755 43 H -0.230 1.230 44 H -0.210 1.210 45 H 0.166 0.834 46 H 0.168 0.832 47 H 0.269 0.731 48 H 0.208 0.792 49 H 0.074 0.926 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.340 1.557 -5.544 5.912 hybrid contribution -1.828 0.248 0.668 1.962 sum -0.488 1.805 -4.876 5.222 Atomic orbital electron populations 1.23401 0.91713 1.07147 1.05738 1.87244 1.10294 1.14215 1.98190 1.23427 0.99270 0.92369 1.05889 1.22313 0.92511 0.98089 0.97699 0.88381 1.23335 0.96622 0.95786 0.99882 1.21884 0.82967 0.97125 0.97294 0.89355 1.45324 1.05405 1.60787 1.22630 1.17459 0.83408 0.77774 0.83955 1.90781 1.87184 1.45541 1.21724 1.21362 0.92953 1.09647 0.99041 1.22045 0.87741 0.98954 0.92312 1.21159 1.04257 0.89197 0.79415 1.86046 1.84555 1.38414 1.14650 1.19156 0.95509 0.93874 0.83576 1.20627 1.06208 1.00017 0.91335 1.20948 0.95255 0.96104 0.95368 1.19445 1.04477 0.94278 0.94203 1.24959 0.91340 1.13483 0.89164 1.86553 1.38560 1.87354 1.24518 0.94252 0.84900 0.72179 0.81870 1.20975 0.97385 0.99296 0.91870 1.21394 1.06770 0.95129 0.98969 1.83794 1.38685 1.58329 1.26250 1.24919 0.92150 1.00503 0.89977 1.23240 0.98497 1.03702 0.96225 1.23501 0.98577 0.98792 0.97446 0.89802 0.89449 0.87811 0.89287 0.88512 0.87019 0.88930 0.74814 0.87691 0.87710 0.84795 0.84182 0.88496 0.75532 1.22972 1.21038 0.83444 0.83200 0.73072 0.79230 0.92643 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.28 10.76 113.37 1.22 1.50 16 2 S -0.33 -0.77 22.37 -56.49 -1.26 -2.04 16 3 C -0.06 0.19 5.78 71.98 0.42 0.61 16 4 C -0.09 0.30 3.53 -10.27 -0.04 0.26 16 5 H 0.10 -0.29 8.13 -2.39 -0.02 -0.31 16 6 C -0.12 0.66 7.39 31.12 0.23 0.89 16 7 C 0.11 0.05 4.32 45.52 0.20 0.25 16 8 H 0.09 0.42 7.46 -2.39 -0.02 0.40 16 9 N -0.69 -0.65 5.26 -443.33 -2.33 -2.99 16 10 C 0.59 4.57 7.81 86.65 0.68 5.24 16 11 O -0.57 -8.68 14.45 -4.07 -0.06 -8.74 16 12 C -0.23 -1.13 6.31 -18.99 -0.12 -1.25 16 13 C 0.04 0.26 7.00 25.26 0.18 0.44 16 14 C 0.13 0.83 4.73 71.24 0.34 1.16 16 15 O -0.32 -3.56 10.12 -92.41 -0.94 -4.49 16 16 C 0.12 1.20 6.69 22.50 0.15 1.35 16 17 C -0.16 -1.47 9.99 22.37 0.22 -1.24 16 18 C -0.06 -0.42 9.60 22.25 0.21 -0.20 16 19 C -0.12 -0.73 5.42 -19.85 -0.11 -0.83 16 20 C -0.08 -0.15 2.81 71.23 0.20 0.05 16 21 O -0.56 -2.63 12.74 -148.98 -1.90 -4.53 16 22 Si 0.76 -0.10 29.78 68.60 2.04 1.94 16 23 C -0.08 -0.36 8.66 22.26 0.19 -0.17 16 24 C -0.20 -1.22 9.04 22.37 0.20 -1.02 16 25 O -0.18 -0.56 10.52 4.54 0.05 -0.51 16 26 C -0.01 0.04 12.03 66.89 0.80 0.84 16 27 C -0.20 0.52 10.60 23.65 0.25 0.77 16 28 C -0.14 -0.10 7.43 31.12 0.23 0.13 16 29 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.09 -0.40 8.14 -2.39 -0.02 -0.41 16 31 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.09 -0.35 7.84 -2.39 -0.02 -0.37 16 33 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.11 -0.85 8.10 -2.39 -0.02 -0.87 16 35 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 36 H 0.41 -1.97 7.87 -92.71 -0.73 -2.70 16 37 H 0.11 0.80 6.02 -2.39 -0.01 0.79 16 38 H 0.10 0.07 7.66 -2.39 -0.02 0.05 16 39 H 0.13 0.99 8.06 -2.91 -0.02 0.97 16 40 H 0.14 0.61 8.06 -2.91 -0.02 0.59 16 41 H 0.10 -0.25 7.96 -2.39 -0.02 -0.27 16 42 H 0.39 -1.47 8.74 -74.06 -0.65 -2.12 16 43 H -0.30 -2.32 7.11 99.48 0.71 -1.61 16 44 H -0.28 -0.96 7.11 99.48 0.71 -0.25 16 45 H 0.15 -0.02 4.87 -2.91 -0.01 -0.03 16 46 H 0.15 0.20 6.30 -2.91 -0.02 0.18 16 47 H 0.25 -3.27 8.06 -2.91 -0.02 -3.30 16 48 H 0.19 -1.82 7.74 -2.91 -0.02 -1.85 16 49 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.10 0.02 7.90 -2.39 -0.02 0.01 16 Total: 0.00 -26.06 429.00 0.71 -25.35 By element: Atomic # 1 Polarization: -12.44 SS G_CDS: -0.35 Total: -12.79 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 5.46 Total: 8.79 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -2.33 Total: -2.99 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -2.84 Total: -18.27 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: 2.04 Total: 1.94 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -1.26 Total: -2.04 kcal Total: -26.06 0.71 -25.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4549634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.151 kcal (2) G-P(sol) polarization free energy of solvation -26.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds