Wall clock time and date at job start Tue Mar 9 2021 13:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81399 * 103.00238 * 2 1 4 4 C 1.53006 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.09003 * 112.85166 * 43.80432 * 4 3 2 6 6 C 1.53784 * 113.61135 * 174.99807 * 4 3 2 7 7 C 1.53781 * 87.07913 * 139.98262 * 6 4 3 8 8 H 1.09003 * 113.60746 * 220.02045 * 7 6 4 9 9 N 1.46494 * 113.61776 * 89.20128 * 7 6 4 10 10 C 1.34773 * 119.99949 * 154.99839 * 9 7 6 11 11 O 1.21275 * 120.00446 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99800 * 179.97438 * 10 9 7 13 13 O 1.42895 * 109.47069 * 180.02562 * 12 10 9 14 14 C 1.35902 * 117.00176 * 180.02562 * 13 12 10 15 15 C 1.38710 * 120.06198 * 179.97438 * 14 13 12 16 16 C 1.38158 * 119.94995 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.97390 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.47500 * 300.00125 * 17 16 15 19 19 Si 1.86301 * 109.47121 * 179.97438 * 17 16 15 20 20 C 1.38247 * 120.05324 * 359.97438 * 16 15 14 21 21 C 1.38288 * 120.11103 * 0.02562 * 20 16 15 22 22 C 1.38116 * 120.05718 * 359.67773 * 21 20 16 23 23 C 1.53780 * 113.61185 * 272.49368 * 4 3 2 24 24 H 1.08997 * 109.47504 * 300.00249 * 1 2 3 25 25 H 1.09001 * 109.46984 * 59.99943 * 1 2 3 26 26 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47659 * 59.99879 * 3 2 1 28 28 H 1.09000 * 109.46960 * 299.99674 * 3 2 1 29 29 H 1.09004 * 113.61147 * 254.52694 * 6 4 3 30 30 H 1.08995 * 113.61447 * 25.34685 * 6 4 3 31 31 H 0.97000 * 119.99836 * 334.99328 * 9 7 6 32 32 H 1.09001 * 109.47014 * 300.00277 * 12 10 9 33 33 H 1.08998 * 109.47033 * 59.99851 * 12 10 9 34 34 H 1.08009 * 120.02307 * 359.97438 * 15 14 13 35 35 H 1.09000 * 109.47239 * 60.00230 * 17 16 15 36 36 H 0.96697 * 113.99558 * 299.99861 * 18 17 16 37 37 H 1.48506 * 109.99894 * 179.97438 * 19 17 16 38 38 H 1.48494 * 110.00470 * 301.32291 * 19 17 16 39 39 H 1.07999 * 119.94123 * 180.02562 * 20 16 15 40 40 H 1.08003 * 119.96548 * 179.97438 * 21 20 16 41 41 H 1.07998 * 120.03343 * 180.32234 * 22 21 20 42 42 H 1.08996 * 113.61507 * 334.56463 * 23 4 3 43 43 H 1.08996 * 113.61313 * 105.47850 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9398 0.0006 5 1 4.2450 1.2671 -0.6944 6 6 4.1963 3.4040 -0.1222 7 6 5.2868 3.0701 0.9095 8 1 5.4505 3.8599 1.6428 9 7 6.5318 2.5829 0.3107 10 6 7.6980 2.7249 0.9711 11 8 7.7168 3.2566 2.0610 12 6 8.9787 2.2231 0.3553 13 8 10.0685 2.4869 1.2411 14 6 11.3040 2.0946 0.8332 15 6 12.4073 2.3199 1.6433 16 6 13.6624 1.9206 1.2260 17 6 14.8612 2.1645 2.1059 18 8 15.0043 3.5673 2.3381 19 14 16.3913 1.5144 1.2650 20 6 13.8192 1.2965 0.0025 21 6 12.7210 1.0708 -0.8070 22 6 11.4633 1.4625 -0.3918 23 6 4.3607 1.9484 1.4086 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8032 2.2372 0.8899 28 1 1.8032 2.2371 -0.8900 29 1 4.5897 3.6581 -1.1065 30 1 3.4586 4.1214 0.2369 31 1 6.5168 2.1579 -0.5612 32 1 8.9027 1.1495 0.1830 33 1 9.1495 2.7321 -0.5932 34 1 12.2853 2.8078 2.5991 35 1 14.7241 1.6510 3.0575 36 1 15.1304 4.0882 1.5332 37 1 17.5808 1.7495 2.1224 38 1 16.2418 0.0629 0.9898 39 1 14.8011 0.9848 -0.3217 40 1 12.8462 0.5834 -1.7626 41 1 10.6052 1.2814 -1.0220 42 1 3.6685 2.2680 2.1876 43 1 4.8868 1.0275 1.6601 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:10 Heat of formation + Delta-G solvation = -46.888327 kcal Electronic energy + Delta-G solvation = -23969.256655 eV Core-core repulsion = 20301.737289 eV Total energy + Delta-G solvation = -3667.519366 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69931 -41.05455 -39.69621 -38.79343 -37.23191 -34.82857 -32.46991 -31.79171 -30.79091 -29.75577 -28.90178 -26.81574 -26.73253 -24.04775 -23.67235 -22.75327 -21.69994 -20.33389 -19.33826 -18.58440 -17.68504 -17.54004 -17.43852 -17.20748 -16.97501 -16.64972 -16.18650 -16.01285 -15.83908 -15.36004 -15.27056 -15.07122 -14.89961 -14.69096 -14.31219 -14.19929 -14.03517 -13.92216 -13.66651 -13.43753 -13.34755 -12.93252 -12.85857 -12.62575 -12.13159 -12.11517 -11.99830 -11.68068 -11.53343 -11.25990 -11.07374 -10.89596 -10.51373 -10.20230 -9.92471 -9.29485 -8.70165 -4.98855 0.20066 0.38289 0.73691 1.27494 1.36922 1.45370 1.65297 1.67292 1.97099 2.55126 2.67016 3.41255 3.46426 3.52410 3.53918 3.66870 3.71963 3.78723 3.83947 3.98491 4.05959 4.12178 4.24251 4.27113 4.29478 4.32818 4.35094 4.41649 4.48947 4.51600 4.62251 4.72097 4.75808 4.81677 4.86204 4.97459 4.99792 5.03710 5.13980 5.23870 5.36427 5.44276 5.51798 5.69042 6.24953 6.42366 6.74488 7.07077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.323 6.323 3 C -0.063 4.063 4 C -0.087 4.087 5 H 0.102 0.898 6 C -0.117 4.117 7 C 0.112 3.888 8 H 0.083 0.917 9 N -0.692 5.692 10 C 0.514 3.486 11 O -0.573 6.573 12 C 0.039 3.961 13 O -0.324 6.324 14 C 0.113 3.887 15 C -0.150 4.150 16 C -0.084 4.084 17 C -0.087 4.087 18 O -0.558 6.558 19 Si 0.797 3.203 20 C -0.157 4.157 21 C -0.070 4.070 22 C -0.202 4.202 23 C -0.145 4.145 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.421 0.579 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.396 0.604 37 H -0.301 1.301 38 H -0.280 1.280 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.093 0.907 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 -0.474 -10.579 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.097 6.097 3 C -0.211 4.211 4 C -0.106 4.106 5 H 0.121 0.879 6 C -0.157 4.157 7 C 0.006 3.994 8 H 0.102 0.898 9 N -0.346 5.346 10 C 0.301 3.699 11 O -0.451 6.451 12 C -0.039 4.039 13 O -0.237 6.237 14 C 0.068 3.932 15 C -0.169 4.169 16 C -0.085 4.085 17 C -0.195 4.195 18 O -0.366 6.366 19 Si 0.702 3.298 20 C -0.175 4.175 21 C -0.087 4.087 22 C -0.221 4.221 23 C -0.183 4.183 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.122 0.878 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.259 0.741 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.245 0.755 37 H -0.230 1.230 38 H -0.206 1.206 39 H 0.167 0.833 40 H 0.181 0.819 41 H 0.178 0.822 42 H 0.112 0.888 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.728 -1.617 -8.970 9.277 hybrid contribution -1.611 0.608 0.631 1.834 sum -3.339 -1.008 -8.340 9.040 Atomic orbital electron populations 1.23400 0.91842 1.07128 1.05713 1.87198 1.10183 1.14174 1.98185 1.23438 0.99472 0.92371 1.05819 1.22341 0.92399 0.98103 0.97765 0.87940 1.23333 0.96559 0.95815 0.99950 1.21861 0.83039 0.97159 0.97313 0.89838 1.45338 1.05076 1.61231 1.22913 1.20582 0.85795 0.78459 0.85072 1.90765 1.87264 1.44366 1.22701 1.22718 0.83014 1.04220 0.93949 1.86122 1.13995 1.77729 1.45876 1.19207 0.83915 0.95738 0.94338 1.20282 0.90867 1.05091 1.00676 1.20209 0.94088 0.98273 0.95912 1.25441 1.04151 0.87017 1.02940 1.86476 1.95473 1.16902 1.37778 0.93500 0.72190 0.79246 0.84878 1.21225 1.00465 1.01872 0.93920 1.21342 0.90848 0.96312 1.00228 1.21636 1.00689 1.03884 0.95870 1.23503 0.98545 0.98864 0.97433 0.89846 0.89485 0.87835 0.89422 0.88590 0.88672 0.87312 0.74098 0.85880 0.85318 0.87155 0.88227 0.75450 1.22972 1.20635 0.83304 0.81867 0.82172 0.88834 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.40 10.76 113.37 1.22 1.61 16 2 S -0.32 -0.27 22.37 -56.49 -1.26 -1.54 16 3 C -0.06 0.29 5.78 71.98 0.42 0.71 16 4 C -0.09 0.50 3.54 -10.26 -0.04 0.46 16 5 H 0.10 -0.62 8.13 -2.39 -0.02 -0.64 16 6 C -0.12 0.91 7.39 31.12 0.23 1.14 16 7 C 0.11 -0.22 4.32 45.52 0.20 -0.02 16 8 H 0.08 0.29 7.46 -2.39 -0.02 0.27 16 9 N -0.69 2.51 5.27 -440.04 -2.32 0.19 16 10 C 0.51 1.95 7.91 87.66 0.69 2.64 16 11 O -0.57 -9.16 16.10 16.02 0.26 -8.90 16 12 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 13 O -0.32 -2.54 9.67 -73.41 -0.71 -3.25 16 14 C 0.11 0.56 6.69 22.51 0.15 0.71 16 15 C -0.15 -1.10 9.55 22.36 0.21 -0.89 16 16 C -0.08 -0.23 5.39 -19.88 -0.11 -0.34 16 17 C -0.09 -0.20 2.82 71.23 0.20 0.00 16 18 O -0.56 -2.05 12.77 -148.98 -1.90 -3.95 16 19 Si 0.80 -1.46 29.79 68.60 2.04 0.58 16 20 C -0.16 0.30 8.67 22.28 0.19 0.50 16 21 C -0.07 0.29 10.04 22.25 0.22 0.51 16 22 C -0.20 0.47 9.04 22.37 0.20 0.67 16 23 C -0.14 0.26 7.43 31.12 0.23 0.49 16 24 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 25 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 26 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H 0.09 -0.45 7.84 -2.39 -0.02 -0.47 16 28 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H 0.09 -0.98 8.14 -2.38 -0.02 -1.00 16 30 H 0.11 -0.97 8.10 -2.39 -0.02 -0.99 16 31 H 0.42 -4.67 8.70 -92.71 -0.81 -5.48 16 32 H 0.12 -1.02 7.65 -2.39 -0.02 -1.03 16 33 H 0.13 -1.19 7.67 -2.39 -0.02 -1.21 16 34 H 0.11 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.10 0.45 7.96 -2.39 -0.02 0.43 16 36 H 0.40 -1.99 8.70 -74.06 -0.64 -2.64 16 37 H -0.30 -1.78 7.11 99.48 0.71 -1.07 16 38 H -0.28 -0.50 7.11 99.48 0.71 0.21 16 39 H 0.15 -0.98 4.87 -2.91 -0.01 -1.00 16 40 H 0.16 -1.72 8.06 -2.91 -0.02 -1.74 16 41 H 0.16 -1.49 6.30 -2.91 -0.02 -1.51 16 42 H 0.09 -0.15 7.89 -2.39 -0.02 -0.17 16 43 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 Total: 0.00 -27.24 370.96 0.12 -27.11 By element: Atomic # 1 Polarization: -18.36 SS G_CDS: -0.38 Total: -18.74 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 4.40 Total: 8.49 kcal Atomic # 7 Polarization: 2.51 SS G_CDS: -2.32 Total: 0.19 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -2.35 Total: -16.09 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: 2.04 Total: 0.58 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -1.26 Total: -1.54 kcal Total: -27.24 0.12 -27.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.775 kcal (2) G-P(sol) polarization free energy of solvation -27.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds