Wall clock time and date at job start Tue Mar 9 2021 13:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81403 * 102.99631 * 2 1 4 4 C 1.53001 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.84750 * 43.80292 * 4 3 2 6 6 C 1.53780 * 113.61578 * 174.99875 * 4 3 2 7 7 C 1.53781 * 87.08248 * 139.98032 * 6 4 3 8 8 H 1.08998 * 113.61640 * 219.93595 * 7 6 4 9 9 N 1.46497 * 113.61409 * 89.11321 * 7 6 4 10 10 C 1.34780 * 119.99786 * 155.00150 * 9 7 6 11 11 O 1.21692 * 119.99801 * 5.10700 * 10 9 7 12 12 C 1.46672 * 119.99630 * 184.83316 * 10 9 7 13 13 C 1.37885 * 126.22700 * 354.91620 * 12 10 9 14 14 C 1.39878 * 107.08918 * 179.88720 * 13 12 10 15 15 Br 1.89104 * 126.07134 * 180.14922 * 14 13 12 16 16 C 1.35509 * 107.85638 * 0.38456 * 14 13 12 17 17 C 1.50696 * 125.57382 * 179.80108 * 16 14 13 18 18 O 1.42900 * 109.47516 * 149.95452 * 17 16 14 19 19 Si 1.86303 * 109.47301 * 29.95477 * 17 16 14 20 20 N 1.35596 * 108.85454 * 359.76159 * 16 14 13 21 21 C 1.46502 * 125.67858 * 180.02562 * 20 16 14 22 22 C 1.53782 * 113.61212 * 272.49831 * 4 3 2 23 23 H 1.08999 * 109.46988 * 299.99777 * 1 2 3 24 24 H 1.08997 * 109.47171 * 60.00635 * 1 2 3 25 25 H 1.09002 * 109.46736 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47297 * 59.99687 * 3 2 1 27 27 H 1.09003 * 109.46928 * 300.00176 * 3 2 1 28 28 H 1.09002 * 113.61360 * 25.43104 * 6 4 3 29 29 H 1.08996 * 113.68936 * 254.53823 * 6 4 3 30 30 H 0.97001 * 120.00538 * 335.00459 * 9 7 6 31 31 H 1.07994 * 126.45632 * 0.02562 * 13 12 10 32 32 H 1.09004 * 109.47178 * 269.95698 * 17 16 14 33 33 H 0.96694 * 114.00202 * 300.00766 * 18 17 16 34 34 H 1.48506 * 109.99712 * 58.68105 * 19 17 16 35 35 H 1.48498 * 110.00284 * 180.02562 * 19 17 16 36 36 H 1.09005 * 109.46669 * 275.77717 * 21 20 16 37 37 H 1.09001 * 109.46548 * 35.77040 * 21 20 16 38 38 H 1.08993 * 109.47775 * 155.77507 * 21 20 16 39 39 H 1.08997 * 113.61412 * 105.47338 * 22 4 3 40 40 H 1.08997 * 113.61262 * 334.56497 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9401 -0.0006 5 1 4.2442 1.2676 -0.6962 6 6 4.1960 3.4043 -0.1235 7 6 5.2874 3.0704 0.9071 8 1 5.4527 3.8605 1.6396 9 7 6.5312 2.5814 0.3072 10 6 7.6984 2.7229 0.9662 11 8 7.7079 3.1716 2.0973 12 6 8.9564 2.3305 0.3222 13 6 9.0864 1.7160 -0.9053 14 6 10.4544 1.5282 -1.1281 15 35 11.2348 0.7327 -2.6560 16 6 11.1210 2.0128 -0.0524 17 6 12.6173 2.0084 0.1267 18 8 13.0046 3.1274 0.9267 19 14 13.4427 2.1211 -1.5397 20 7 10.2216 2.5031 0.8360 21 6 10.5430 3.1153 2.1276 22 6 4.3618 1.9484 1.4068 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8030 2.2372 0.8899 27 1 1.8030 2.2371 -0.8900 28 1 3.4591 4.1216 0.2377 29 1 4.5885 3.6600 -1.1077 30 1 6.5149 2.1558 -0.5643 31 1 8.2834 1.4348 -1.5704 32 1 12.9213 1.0857 0.6211 33 1 12.7651 3.9839 0.5472 34 1 13.0115 3.3593 -2.2372 35 1 14.9187 2.1171 -1.3767 36 1 10.6669 2.3351 2.8787 37 1 11.4682 3.6849 2.0394 38 1 9.7333 3.7813 2.4256 39 1 4.8882 1.0275 1.6576 40 1 3.6702 2.2677 2.1864 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_5000100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:19 Heat of formation + Delta-G solvation = 10.173561 kcal Electronic energy + Delta-G solvation = -23723.443948 eV Core-core repulsion = 20100.063389 eV Total energy + Delta-G solvation = -3623.380558 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.029 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.94579 -41.13842 -39.33927 -38.04847 -35.15473 -34.42008 -32.42968 -31.32392 -30.46235 -29.61854 -27.44368 -27.04555 -26.69993 -24.13389 -23.24139 -21.75032 -20.78745 -20.21427 -19.02450 -18.37393 -17.45057 -17.24403 -17.07881 -16.51022 -16.23721 -15.99027 -15.73264 -15.55960 -15.26756 -15.16881 -14.94783 -14.66222 -14.56677 -14.29924 -14.08862 -13.89224 -13.75131 -13.55996 -13.32975 -13.20380 -12.86539 -12.80123 -12.46496 -12.10543 -12.03602 -11.67166 -11.50797 -11.24535 -11.22924 -10.87004 -10.85217 -10.22542 -9.90214 -9.36551 -8.67776 -4.69349 0.11812 0.33327 0.76203 0.87799 1.19088 1.43079 1.55515 1.69873 1.91806 2.09113 2.23194 3.02007 3.26309 3.43754 3.51681 3.57028 3.73765 3.74806 3.82964 4.09311 4.24877 4.29461 4.31415 4.32645 4.35027 4.38903 4.44169 4.52552 4.60242 4.65504 4.75789 4.78717 4.84819 4.88050 5.03116 5.06155 5.16259 5.22022 5.52774 5.57166 5.75293 6.19936 6.36189 7.00843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.324 6.324 3 C -0.062 4.062 4 C -0.089 4.089 5 H 0.100 0.900 6 C -0.118 4.118 7 C 0.117 3.883 8 H 0.091 0.909 9 N -0.686 5.686 10 C 0.593 3.407 11 O -0.576 6.576 12 C -0.058 4.058 13 C -0.091 4.091 14 C -0.190 4.190 15 Br 0.091 6.909 16 C 0.057 3.943 17 C -0.041 4.041 18 O -0.540 6.540 19 Si 0.630 3.370 20 N -0.390 5.390 21 C 0.056 3.944 22 C -0.143 4.143 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.417 0.583 31 H 0.187 0.813 32 H 0.140 0.860 33 H 0.387 0.613 34 H -0.277 1.277 35 H -0.269 1.269 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.743 0.221 -3.944 6.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.098 6.098 3 C -0.210 4.210 4 C -0.108 4.108 5 H 0.118 0.882 6 C -0.158 4.158 7 C 0.012 3.988 8 H 0.109 0.891 9 N -0.337 5.337 10 C 0.381 3.619 11 O -0.457 6.457 12 C -0.172 4.172 13 C -0.117 4.117 14 C -0.276 4.276 15 Br 0.175 6.825 16 C -0.066 4.066 17 C -0.151 4.151 18 O -0.348 6.348 19 Si 0.531 3.469 20 N -0.062 5.062 21 C -0.084 4.084 22 C -0.181 4.181 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.121 0.879 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.130 0.870 29 H 0.111 0.889 30 H 0.255 0.745 31 H 0.204 0.796 32 H 0.157 0.843 33 H 0.237 0.763 34 H -0.203 1.203 35 H -0.194 1.194 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.031 -0.438 -3.468 4.627 hybrid contribution -1.104 1.911 0.828 2.357 sum -4.134 1.473 -2.640 5.122 Atomic orbital electron populations 1.23399 0.91879 1.07103 1.05700 1.87238 1.10129 1.14257 1.98186 1.23433 0.99430 0.92308 1.05834 1.22345 0.92422 0.98108 0.97950 0.88231 1.23353 0.96621 0.95834 0.99976 1.21889 0.82588 0.97180 0.97192 0.89106 1.45198 1.05028 1.60614 1.22815 1.16978 0.83076 0.77315 0.84540 1.90803 1.87566 1.48037 1.19275 1.20153 0.85534 1.13956 0.97559 1.21503 0.95398 0.99969 0.94856 1.20691 0.95667 1.15047 0.96160 1.96317 1.73109 1.79405 1.33705 1.21006 0.93251 1.01981 0.90316 1.24736 0.88460 0.93299 1.08611 1.86544 1.82583 1.17002 1.48672 0.92673 0.80051 0.94849 0.79290 1.43934 1.04230 1.42423 1.15595 1.22681 1.04926 0.99878 0.80958 1.23495 0.98482 0.98846 0.97320 0.89789 0.89542 0.87880 0.89252 0.88690 0.87011 0.88919 0.74516 0.79595 0.84301 0.76304 1.20258 1.19448 0.90264 0.86619 0.88741 0.92284 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.40 10.76 113.37 1.22 1.62 16 2 S -0.32 -0.30 22.37 -56.49 -1.26 -1.57 16 3 C -0.06 0.30 5.78 71.98 0.42 0.71 16 4 C -0.09 0.51 3.53 -10.27 -0.04 0.47 16 5 H 0.10 -0.53 8.13 -2.39 -0.02 -0.54 16 6 C -0.12 0.95 7.39 31.12 0.23 1.18 16 7 C 0.12 -0.33 4.29 45.52 0.20 -0.13 16 8 H 0.09 0.09 7.53 -2.39 -0.02 0.07 16 9 N -0.69 1.66 5.25 -443.99 -2.33 -0.67 16 10 C 0.59 2.47 7.77 86.44 0.67 3.14 16 11 O -0.58 -6.41 14.25 -4.32 -0.06 -6.47 16 12 C -0.06 -0.15 6.88 40.35 0.28 0.12 16 13 C -0.09 0.14 10.34 22.58 0.23 0.37 16 14 C -0.19 -0.03 6.15 22.04 0.14 0.10 16 15 Br 0.09 -0.23 28.24 -20.37 -0.58 -0.80 16 16 C 0.06 0.11 6.15 41.34 0.25 0.36 16 17 C -0.04 -0.03 2.99 71.23 0.21 0.18 16 18 O -0.54 -0.73 10.11 -148.98 -1.51 -2.23 16 19 Si 0.63 1.51 27.10 68.60 1.86 3.37 16 20 N -0.39 -1.31 3.16 -519.60 -1.64 -2.95 16 21 C 0.06 0.12 10.22 127.77 1.31 1.43 16 22 C -0.14 0.35 7.43 31.12 0.23 0.58 16 23 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 24 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.09 -0.51 7.84 -2.39 -0.02 -0.53 16 27 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 28 H 0.11 -1.10 8.10 -2.39 -0.02 -1.11 16 29 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H 0.42 -3.26 7.60 -92.71 -0.70 -3.96 16 31 H 0.19 -1.56 7.45 -2.91 -0.02 -1.58 16 32 H 0.14 -0.15 7.96 -2.38 -0.02 -0.17 16 33 H 0.39 -1.28 8.31 -74.06 -0.62 -1.90 16 34 H -0.28 -1.98 7.11 99.48 0.71 -1.28 16 35 H -0.27 -2.29 7.11 99.48 0.71 -1.58 16 36 H 0.08 0.19 8.14 -2.38 -0.02 0.17 16 37 H 0.12 -0.09 5.25 -2.39 -0.01 -0.11 16 38 H 0.09 0.46 6.11 -2.39 -0.01 0.44 16 39 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.10 -0.28 7.90 -2.39 -0.02 -0.29 16 Total: 0.00 -16.04 353.56 -0.38 -16.42 By element: Atomic # 1 Polarization: -15.01 SS G_CDS: -0.20 Total: -15.22 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.35 Total: 10.13 kcal Atomic # 7 Polarization: 0.35 SS G_CDS: -3.97 Total: -3.63 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -1.57 Total: -8.71 kcal Atomic # 14 Polarization: 1.51 SS G_CDS: 1.86 Total: 3.37 kcal Atomic # 16 Polarization: -0.30 SS G_CDS: -1.26 Total: -1.57 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.58 Total: -0.80 kcal Total: -16.04 -0.38 -16.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_5000100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.591 kcal (2) G-P(sol) polarization free energy of solvation -16.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds