Wall clock time and date at job start Tue Mar 9 2021 13:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35994 * 117.00165 * 2 1 4 4 C 1.39155 * 120.07385 * 180.02562 * 3 2 1 5 5 O 1.35995 * 120.07070 * 359.73996 * 4 3 2 6 6 C 1.42895 * 117.00064 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47460 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99698 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99638 * 179.97438 * 9 7 6 11 11 H 1.08992 * 112.85221 * 336.20055 * 10 9 7 12 12 C 1.53782 * 113.60956 * 107.50691 * 10 9 7 13 13 C 1.53786 * 87.08436 * 89.11382 * 12 10 9 14 14 H 1.08995 * 113.69350 * 270.87441 * 13 12 10 15 15 C 1.52994 * 113.61514 * 139.97469 * 13 12 10 16 16 S 1.81404 * 109.47039 * 87.50695 * 15 13 12 17 17 C 1.81394 * 103.00210 * 179.97438 * 16 15 13 18 18 C 1.53783 * 113.61578 * 204.99832 * 10 9 7 19 19 C 1.38558 * 119.85524 * 179.72156 * 4 3 2 20 20 C 1.38247 * 119.99917 * 359.97438 * 19 4 3 21 21 C 1.38245 * 120.14442 * 0.02562 * 20 19 4 22 22 C 1.50705 * 119.92645 * 179.97438 * 21 20 19 23 23 O 1.42893 * 109.47682 * 244.99996 * 22 21 20 24 24 Si 1.86303 * 109.46713 * 5.00096 * 22 21 20 25 25 C 1.38237 * 120.15353 * 359.95521 * 21 20 19 26 26 H 1.08991 * 109.47071 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46932 * 300.00387 * 1 2 3 28 28 H 1.09002 * 109.46940 * 59.99906 * 1 2 3 29 29 H 1.08999 * 109.47268 * 300.00538 * 6 5 4 30 30 H 1.09005 * 109.46932 * 60.00506 * 6 5 4 31 31 H 0.97002 * 120.00375 * 0.02562 * 9 7 6 32 32 H 1.09002 * 113.61436 * 203.66403 * 12 10 9 33 33 H 1.08997 * 113.61545 * 334.56469 * 12 10 9 34 34 H 1.08996 * 109.47479 * 207.50817 * 15 13 12 35 35 H 1.08996 * 109.47754 * 327.51128 * 15 13 12 36 36 H 1.08998 * 109.47216 * 179.97438 * 17 16 15 37 37 H 1.08995 * 109.47078 * 300.00131 * 17 16 15 38 38 H 1.08999 * 109.47148 * 60.00448 * 17 16 15 39 39 H 1.09001 * 113.60810 * 25.44019 * 18 10 9 40 40 H 1.08993 * 113.61400 * 156.33562 * 18 10 9 41 41 H 1.07996 * 120.00036 * 180.02562 * 19 4 3 42 42 H 1.08002 * 119.92731 * 179.97438 * 20 19 4 43 43 H 1.09005 * 109.47312 * 124.99331 * 22 21 20 44 44 H 0.96702 * 114.00090 * 59.99481 * 23 22 21 45 45 H 1.48502 * 110.00151 * 58.68164 * 24 22 21 46 46 H 1.48500 * 109.99980 * 179.97438 * 24 22 21 47 47 H 1.07998 * 120.00548 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1476 0.0043 6 6 5.6003 0.3005 0.0028 7 6 6.2519 -1.0584 0.0081 8 8 5.5669 -2.0592 0.0121 9 7 7.5957 -1.1614 0.0082 10 6 8.2290 -2.4824 0.0139 11 1 7.5834 -3.2596 0.4227 12 6 8.8772 -2.8605 -1.3284 13 6 10.1581 -2.1853 -0.8104 14 1 10.2157 -1.1212 -1.0393 15 6 11.4384 -2.9409 -1.1719 16 16 12.0208 -2.3986 -2.8020 17 6 13.5204 -3.3886 -3.0498 18 6 9.6470 -2.4833 0.6090 19 6 4.0604 2.5232 -0.0064 20 6 3.3031 3.6798 -0.0122 21 6 1.9226 3.6056 -0.0117 22 6 1.1018 4.8695 -0.0174 23 8 0.3650 4.9647 1.2032 24 14 2.2312 6.3426 -0.1775 25 6 1.2933 2.3748 -0.0062 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 5.9061 0.8462 -0.8898 30 1 5.9070 0.8543 0.8902 31 1 8.1435 -0.3609 0.0054 32 1 8.9795 -3.9355 -1.4765 33 1 8.4330 -2.3545 -2.1856 34 1 12.2051 -2.7348 -0.4251 35 1 11.2340 -4.0112 -1.1968 36 1 13.9629 -3.1425 -4.0150 37 1 14.2348 -3.1709 -2.2560 38 1 13.2642 -4.4479 -3.0276 39 1 9.8242 -1.6728 1.3160 40 1 9.9597 -3.4551 0.9907 41 1 5.1387 2.5838 -0.0072 42 1 3.7909 4.6433 -0.0163 43 1 0.4095 4.8494 -0.8591 44 1 0.9184 4.9874 1.9959 45 1 3.0262 6.2396 -1.4276 46 1 1.4339 7.5954 -0.1851 47 1 0.2147 2.3197 -0.0063 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:23 Heat of formation + Delta-G solvation = -79.078368 kcal Electronic energy + Delta-G solvation = -28346.545668 eV Core-core repulsion = 24203.410626 eV Total energy + Delta-G solvation = -4143.135042 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81766 -41.28160 -39.89827 -38.98477 -38.73415 -36.91254 -34.73803 -32.07807 -31.49171 -30.94965 -29.89669 -29.14430 -28.39315 -26.85667 -26.21068 -24.23682 -23.43294 -22.56207 -21.86441 -20.40687 -19.76081 -18.53664 -18.37975 -17.91044 -17.53037 -17.43731 -17.07050 -16.88854 -16.60017 -16.17639 -16.09496 -15.92981 -15.74865 -15.63696 -15.30084 -15.15038 -15.06431 -14.70262 -14.43138 -14.24098 -14.04947 -13.76917 -13.73332 -13.61429 -13.48369 -13.43856 -12.92206 -12.62567 -12.51019 -12.21778 -12.17825 -12.10426 -11.97624 -11.75177 -11.62773 -11.34664 -10.95920 -10.87925 -10.46293 -10.16521 -9.78608 -8.84689 -8.68470 -5.06296 0.17993 0.30237 0.64728 1.26787 1.41967 1.49582 1.57856 1.61545 1.95401 2.32615 2.51826 2.57620 3.29451 3.40535 3.42077 3.45192 3.59890 3.64097 3.68221 3.76883 3.79992 3.92775 3.94088 4.12209 4.12775 4.13538 4.18159 4.26136 4.26375 4.29836 4.34470 4.40085 4.49125 4.56958 4.58299 4.61264 4.65946 4.71464 4.72820 4.90701 4.95411 5.00182 5.03523 5.10142 5.37421 5.46118 5.56127 5.97049 6.32238 6.54550 6.55641 7.11007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.302 6.302 3 C 0.107 3.893 4 C 0.104 3.896 5 O -0.277 6.277 6 C 0.039 3.961 7 C 0.519 3.481 8 O -0.507 6.507 9 N -0.711 5.711 10 C 0.121 3.879 11 H 0.108 0.892 12 C -0.143 4.143 13 C -0.096 4.096 14 H 0.099 0.901 15 C -0.076 4.076 16 S -0.265 6.265 17 C -0.122 4.122 18 C -0.135 4.135 19 C -0.169 4.169 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.066 4.066 23 O -0.540 6.540 24 Si 0.689 3.311 25 C -0.146 4.146 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.403 0.597 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.379 0.621 45 H -0.257 1.257 46 H -0.255 1.255 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 2.176 2.796 6.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.061 3.939 4 C 0.058 3.942 5 O -0.189 6.189 6 C -0.040 4.040 7 C 0.303 3.697 8 O -0.379 6.379 9 N -0.365 5.365 10 C 0.016 3.984 11 H 0.126 0.874 12 C -0.181 4.181 13 C -0.115 4.115 14 H 0.117 0.883 15 C -0.224 4.224 16 S -0.039 6.039 17 C -0.291 4.291 18 C -0.174 4.174 19 C -0.188 4.188 20 C -0.130 4.130 21 C -0.116 4.116 22 C -0.177 4.177 23 O -0.346 6.346 24 Si 0.590 3.410 25 C -0.165 4.165 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.237 0.763 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.130 0.870 44 H 0.227 0.773 45 H -0.182 1.182 46 H -0.180 1.180 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.387 2.465 1.202 5.174 hybrid contribution 0.577 -0.686 0.387 0.976 sum 4.964 1.780 1.589 5.508 Atomic orbital electron populations 1.23132 0.78117 1.04413 1.01360 1.86251 1.21334 1.25339 1.88536 1.18285 0.89021 0.85562 1.01008 1.18275 0.88301 0.85766 1.01813 1.86277 1.16018 1.27745 1.88858 1.22471 0.81316 0.96183 1.04046 1.20021 0.82349 0.90596 0.76702 1.90800 1.62541 1.38019 1.46579 1.45467 1.05821 1.08952 1.76270 1.21823 0.93759 0.85448 0.97364 0.87422 1.23513 0.95128 1.01730 0.97777 1.22394 0.92279 1.00262 0.96578 0.88283 1.23428 1.00301 1.02828 0.95813 1.87023 1.32696 1.58293 1.25894 1.23393 0.97455 1.02098 1.06142 1.23401 0.94342 1.03666 0.96034 1.20994 1.00481 0.90681 1.06659 1.20662 0.92736 0.97756 1.01849 1.20034 0.93713 0.95209 1.02660 1.25037 1.00790 1.01636 0.90214 1.86502 1.36375 1.96600 1.15093 0.94760 0.81771 0.76684 0.87744 1.20938 1.00373 0.90424 1.04762 0.87859 0.92426 0.92625 0.88755 0.88655 0.76279 0.88700 0.90525 0.89823 0.89797 0.87972 0.90451 0.90428 0.90258 0.88216 0.84262 0.85029 0.86979 0.77326 1.18175 1.17990 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 101.05 0.99 1.00 16 2 O -0.30 -1.36 10.28 -34.22 -0.35 -1.71 16 3 C 0.11 0.37 6.70 -39.12 -0.26 0.11 16 4 C 0.10 0.28 6.70 -39.12 -0.26 0.02 16 5 O -0.28 -1.09 9.45 -47.35 -0.45 -1.54 16 6 C 0.04 -0.02 5.22 36.01 0.19 0.16 16 7 C 0.52 0.86 7.91 -10.99 -0.09 0.77 16 8 O -0.51 -3.52 16.10 -14.35 -0.23 -3.75 16 9 N -0.71 1.19 5.26 -53.02 -0.28 0.91 16 10 C 0.12 -0.14 4.32 -67.11 -0.29 -0.43 16 11 H 0.11 0.09 7.46 -51.93 -0.39 -0.30 16 12 C -0.14 0.17 7.43 -25.92 -0.19 -0.02 16 13 C -0.10 0.24 3.53 -89.81 -0.32 -0.08 16 14 H 0.10 -0.24 8.13 -51.93 -0.42 -0.66 16 15 C -0.08 0.14 5.78 37.15 0.21 0.36 16 16 S -0.27 -0.11 22.37 -107.50 -2.40 -2.52 16 17 C -0.12 0.18 10.76 101.05 1.09 1.27 16 18 C -0.13 0.44 7.39 -25.92 -0.19 0.25 16 19 C -0.17 0.06 9.04 -39.46 -0.36 -0.30 16 20 C -0.11 0.08 8.66 -39.58 -0.34 -0.26 16 21 C -0.12 -0.05 5.35 -104.62 -0.56 -0.61 16 22 C -0.07 0.02 2.80 36.01 0.10 0.12 16 23 O -0.54 -0.07 12.83 -35.23 -0.45 -0.53 16 24 Si 0.69 -0.93 29.79 -169.99 -5.06 -6.00 16 25 C -0.15 -0.24 8.67 -39.46 -0.34 -0.58 16 26 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 27 H 0.06 -0.03 7.67 -51.93 -0.40 -0.43 16 28 H 0.06 -0.03 7.65 -51.93 -0.40 -0.43 16 29 H 0.09 -0.31 7.66 -51.93 -0.40 -0.71 16 30 H 0.10 -0.35 7.66 -51.93 -0.40 -0.75 16 31 H 0.40 -1.93 8.70 -40.82 -0.36 -2.29 16 32 H 0.09 -0.12 7.90 -51.93 -0.41 -0.53 16 33 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 34 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 35 H 0.08 -0.18 7.84 -51.93 -0.41 -0.59 16 36 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 37 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 38 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 39 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 40 H 0.10 -0.37 8.10 -51.93 -0.42 -0.79 16 41 H 0.14 -0.49 6.30 -52.49 -0.33 -0.82 16 42 H 0.13 -0.41 4.89 -52.49 -0.26 -0.67 16 43 H 0.11 0.02 7.96 -51.93 -0.41 -0.40 16 44 H 0.38 -1.40 8.70 45.56 0.40 -1.00 16 45 H -0.26 -0.24 7.11 56.52 0.40 0.16 16 46 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 47 H 0.14 0.09 6.30 -52.49 -0.33 -0.24 16 LS Contribution 400.31 15.07 6.03 6.03 Total: 0.00 -11.04 400.31 -10.91 -21.94 By element: Atomic # 1 Polarization: -7.53 SS G_CDS: -7.09 Total: -14.62 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.62 Total: 1.78 kcal Atomic # 7 Polarization: 1.19 SS G_CDS: -0.28 Total: 0.91 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -1.48 Total: -7.53 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: -5.06 Total: -6.00 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.40 Total: -2.52 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -11.04 -10.91 -21.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.137 kcal (2) G-P(sol) polarization free energy of solvation -11.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds