Wall clock time and date at job start Tue Mar 9 2021 13:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35994 * 117.00165 * 2 1 4 4 C 1.39155 * 120.07385 * 180.02562 * 3 2 1 5 5 O 1.35995 * 120.07070 * 359.73996 * 4 3 2 6 6 C 1.42895 * 117.00064 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47460 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99698 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99638 * 179.97438 * 9 7 6 11 11 H 1.08992 * 112.85221 * 336.20055 * 10 9 7 12 12 C 1.53782 * 113.60956 * 107.50691 * 10 9 7 13 13 C 1.53786 * 87.08436 * 89.11382 * 12 10 9 14 14 H 1.08995 * 113.69350 * 270.87441 * 13 12 10 15 15 C 1.52994 * 113.61514 * 139.97469 * 13 12 10 16 16 S 1.81404 * 109.47039 * 87.50695 * 15 13 12 17 17 C 1.81394 * 103.00210 * 179.97438 * 16 15 13 18 18 C 1.53783 * 113.61578 * 204.99832 * 10 9 7 19 19 C 1.38558 * 119.85524 * 179.72156 * 4 3 2 20 20 C 1.38247 * 119.99917 * 359.97438 * 19 4 3 21 21 C 1.38245 * 120.14442 * 0.02562 * 20 19 4 22 22 C 1.50705 * 119.92645 * 179.97438 * 21 20 19 23 23 O 1.42893 * 109.47682 * 244.99996 * 22 21 20 24 24 Si 1.86303 * 109.46713 * 5.00096 * 22 21 20 25 25 C 1.38237 * 120.15353 * 359.95521 * 21 20 19 26 26 H 1.08991 * 109.47071 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46932 * 300.00387 * 1 2 3 28 28 H 1.09002 * 109.46940 * 59.99906 * 1 2 3 29 29 H 1.08999 * 109.47268 * 300.00538 * 6 5 4 30 30 H 1.09005 * 109.46932 * 60.00506 * 6 5 4 31 31 H 0.97002 * 120.00375 * 0.02562 * 9 7 6 32 32 H 1.09002 * 113.61436 * 203.66403 * 12 10 9 33 33 H 1.08997 * 113.61545 * 334.56469 * 12 10 9 34 34 H 1.08996 * 109.47479 * 207.50817 * 15 13 12 35 35 H 1.08996 * 109.47754 * 327.51128 * 15 13 12 36 36 H 1.08998 * 109.47216 * 179.97438 * 17 16 15 37 37 H 1.08995 * 109.47078 * 300.00131 * 17 16 15 38 38 H 1.08999 * 109.47148 * 60.00448 * 17 16 15 39 39 H 1.09001 * 113.60810 * 25.44019 * 18 10 9 40 40 H 1.08993 * 113.61400 * 156.33562 * 18 10 9 41 41 H 1.07996 * 120.00036 * 180.02562 * 19 4 3 42 42 H 1.08002 * 119.92731 * 179.97438 * 20 19 4 43 43 H 1.09005 * 109.47312 * 124.99331 * 22 21 20 44 44 H 0.96702 * 114.00090 * 59.99481 * 23 22 21 45 45 H 1.48502 * 110.00151 * 58.68164 * 24 22 21 46 46 H 1.48500 * 109.99980 * 179.97438 * 24 22 21 47 47 H 1.07998 * 120.00548 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1796 0.1476 0.0043 6 6 5.6003 0.3005 0.0028 7 6 6.2519 -1.0584 0.0081 8 8 5.5669 -2.0592 0.0121 9 7 7.5957 -1.1614 0.0082 10 6 8.2290 -2.4824 0.0139 11 1 7.5834 -3.2596 0.4227 12 6 8.8772 -2.8605 -1.3284 13 6 10.1581 -2.1853 -0.8104 14 1 10.2157 -1.1212 -1.0393 15 6 11.4384 -2.9409 -1.1719 16 16 12.0208 -2.3986 -2.8020 17 6 13.5204 -3.3886 -3.0498 18 6 9.6470 -2.4833 0.6090 19 6 4.0604 2.5232 -0.0064 20 6 3.3031 3.6798 -0.0122 21 6 1.9226 3.6056 -0.0117 22 6 1.1018 4.8695 -0.0174 23 8 0.3650 4.9647 1.2032 24 14 2.2312 6.3426 -0.1775 25 6 1.2933 2.3748 -0.0062 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 5.9061 0.8462 -0.8898 30 1 5.9070 0.8543 0.8902 31 1 8.1435 -0.3609 0.0054 32 1 8.9795 -3.9355 -1.4765 33 1 8.4330 -2.3545 -2.1856 34 1 12.2051 -2.7348 -0.4251 35 1 11.2340 -4.0112 -1.1968 36 1 13.9629 -3.1425 -4.0150 37 1 14.2348 -3.1709 -2.2560 38 1 13.2642 -4.4479 -3.0276 39 1 9.8242 -1.6728 1.3160 40 1 9.9597 -3.4551 0.9907 41 1 5.1387 2.5838 -0.0072 42 1 3.7909 4.6433 -0.0163 43 1 0.4095 4.8494 -0.8591 44 1 0.9184 4.9874 1.9959 45 1 3.0262 6.2396 -1.4276 46 1 1.4339 7.5954 -0.1851 47 1 0.2147 2.3197 -0.0063 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:22 Heat of formation + Delta-G solvation = -80.184812 kcal Electronic energy + Delta-G solvation = -28346.593647 eV Core-core repulsion = 24203.410626 eV Total energy + Delta-G solvation = -4143.183021 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85620 -41.28284 -39.91800 -39.07632 -38.78118 -36.91516 -34.78462 -32.07972 -31.49230 -30.87911 -29.78115 -29.07709 -28.43102 -26.70854 -26.20124 -24.16973 -23.41092 -22.59216 -21.87515 -20.32320 -19.78739 -18.54608 -18.41743 -17.94008 -17.53724 -17.40661 -17.11057 -16.85616 -16.68468 -16.13392 -16.07208 -15.87809 -15.70360 -15.65081 -15.27228 -15.18983 -14.97841 -14.68885 -14.33207 -14.26360 -13.91148 -13.77985 -13.66976 -13.57466 -13.43987 -13.32836 -12.83747 -12.63611 -12.54471 -12.18087 -12.12537 -12.08471 -11.97820 -11.75609 -11.51003 -11.23586 -11.02928 -10.88008 -10.43043 -10.16226 -9.79788 -8.92063 -8.68762 -4.96854 0.16186 0.27527 0.75102 1.33849 1.42246 1.46174 1.68173 1.68670 2.00685 2.30169 2.55370 2.56083 3.43862 3.49127 3.51496 3.56240 3.69887 3.74396 3.81483 3.86266 3.90716 4.04265 4.11700 4.13636 4.27914 4.28684 4.29196 4.30603 4.34381 4.35459 4.43827 4.49642 4.53601 4.63371 4.64821 4.74492 4.78037 4.84329 4.87262 5.00102 5.02211 5.06297 5.12036 5.16933 5.36822 5.54333 5.59727 5.96088 6.39610 6.53295 6.78333 7.12544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.084 3.916 5 O -0.315 6.315 6 C 0.035 3.965 7 C 0.514 3.486 8 O -0.572 6.572 9 N -0.692 5.692 10 C 0.112 3.888 11 H 0.083 0.917 12 C -0.145 4.145 13 C -0.086 4.086 14 H 0.103 0.897 15 C -0.063 4.063 16 S -0.323 6.323 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.159 4.159 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.076 4.076 23 O -0.557 6.557 24 Si 0.788 3.212 25 C -0.153 4.153 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.421 0.579 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.177 0.823 42 H 0.161 0.839 43 H 0.103 0.897 44 H 0.396 0.604 45 H -0.281 1.281 46 H -0.303 1.303 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.787 3.836 3.644 9.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.031 3.969 4 C 0.039 3.961 5 O -0.228 6.228 6 C -0.043 4.043 7 C 0.301 3.699 8 O -0.450 6.450 9 N -0.346 5.346 10 C 0.007 3.993 11 H 0.101 0.899 12 C -0.184 4.184 13 C -0.106 4.106 14 H 0.121 0.879 15 C -0.211 4.211 16 S -0.097 6.097 17 C -0.281 4.281 18 C -0.156 4.156 19 C -0.177 4.177 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.186 4.186 23 O -0.365 6.365 24 Si 0.693 3.307 25 C -0.172 4.172 26 H 0.129 0.871 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.259 0.741 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.194 0.806 42 H 0.178 0.822 43 H 0.120 0.880 44 H 0.246 0.754 45 H -0.207 1.207 46 H -0.231 1.231 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.618 4.133 2.071 8.073 hybrid contribution -0.118 -1.190 0.100 1.200 sum 6.500 2.943 2.171 7.458 Atomic orbital electron populations 1.23279 0.76841 1.05200 1.02057 1.86190 1.22973 1.26665 1.89104 1.18675 0.89939 0.85585 1.02717 1.18596 0.88174 0.86569 1.02774 1.86221 1.18207 1.29085 1.89308 1.22773 0.79358 0.95025 1.07119 1.20591 0.82955 0.90909 0.75477 1.90772 1.64080 1.40228 1.49959 1.45335 1.05067 1.09654 1.74541 1.21853 0.94461 0.85210 0.97808 0.89924 1.23505 0.96123 1.01673 0.97077 1.22337 0.91240 1.00209 0.96782 0.87874 1.23438 1.00575 1.02929 0.94149 1.87200 1.34545 1.59581 1.28404 1.23399 0.96255 1.01844 1.06597 1.23332 0.91796 1.04779 0.95730 1.21396 1.02322 0.89295 1.04725 1.21007 0.92212 0.98983 1.00343 1.20204 0.94554 0.94800 1.02467 1.25270 1.01015 1.02285 0.89988 1.86466 1.37524 1.96597 1.15954 0.93677 0.79168 0.72481 0.85374 1.21014 1.00464 0.90621 1.05076 0.87073 0.91664 0.91945 0.85719 0.85014 0.74065 0.88920 0.92182 0.88589 0.89464 0.87852 0.89484 0.89863 0.88607 0.87383 0.80578 0.82157 0.87961 0.75436 1.20738 1.23145 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.18 16 2 O -0.33 -3.93 10.28 -79.62 -0.82 -4.75 16 3 C 0.08 0.65 6.70 22.57 0.15 0.80 16 4 C 0.08 0.49 6.70 22.57 0.15 0.64 16 5 O -0.31 -2.81 9.45 -67.08 -0.63 -3.45 16 6 C 0.03 -0.07 5.22 71.24 0.37 0.30 16 7 C 0.51 2.09 7.91 87.66 0.69 2.78 16 8 O -0.57 -9.53 16.10 16.01 0.26 -9.28 16 9 N -0.69 2.50 5.26 -440.04 -2.32 0.19 16 10 C 0.11 -0.21 4.32 45.52 0.20 -0.01 16 11 H 0.08 0.31 7.46 -2.39 -0.02 0.29 16 12 C -0.15 0.24 7.43 31.12 0.23 0.47 16 13 C -0.09 0.50 3.53 -10.27 -0.04 0.46 16 14 H 0.10 -0.64 8.13 -2.39 -0.02 -0.66 16 15 C -0.06 0.29 5.78 71.98 0.42 0.71 16 16 S -0.32 -0.27 22.37 -56.49 -1.26 -1.54 16 17 C -0.11 0.39 10.76 113.37 1.22 1.61 16 18 C -0.12 0.91 7.39 31.12 0.23 1.14 16 19 C -0.16 0.40 9.04 22.35 0.20 0.61 16 20 C -0.11 0.36 8.66 22.27 0.19 0.55 16 21 C -0.12 -0.05 5.35 -19.86 -0.11 -0.15 16 22 C -0.08 0.07 2.80 71.24 0.20 0.27 16 23 O -0.56 -0.02 12.83 -148.98 -1.91 -1.93 16 24 Si 0.79 -3.10 29.79 68.60 2.04 -1.06 16 25 C -0.15 -0.67 8.67 22.35 0.19 -0.47 16 26 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.06 0.05 7.67 -2.39 -0.02 0.03 16 28 H 0.06 0.06 7.65 -2.39 -0.02 0.04 16 29 H 0.13 -1.08 7.66 -2.39 -0.02 -1.10 16 30 H 0.13 -1.31 7.66 -2.38 -0.02 -1.33 16 31 H 0.42 -4.77 8.70 -92.71 -0.81 -5.57 16 32 H 0.09 -0.13 7.90 -2.39 -0.02 -0.15 16 33 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.09 -0.44 7.84 -2.39 -0.02 -0.46 16 36 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 40 H 0.11 -0.96 8.10 -2.39 -0.02 -0.98 16 41 H 0.18 -1.93 6.30 -2.91 -0.02 -1.94 16 42 H 0.16 -1.53 4.89 -2.91 -0.01 -1.55 16 43 H 0.10 0.08 7.96 -2.38 -0.02 0.06 16 44 H 0.40 -3.24 8.70 -74.06 -0.64 -3.88 16 45 H -0.28 -0.04 7.11 99.48 0.71 0.66 16 46 H -0.30 -1.27 7.11 99.48 0.71 -0.56 16 47 H 0.14 0.43 6.30 -2.91 -0.02 0.41 16 Total: 0.00 -30.86 400.31 0.37 -30.50 By element: Atomic # 1 Polarization: -19.17 SS G_CDS: -0.41 Total: -19.58 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.42 Total: 10.89 kcal Atomic # 7 Polarization: 2.50 SS G_CDS: -2.32 Total: 0.19 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -3.11 Total: -19.40 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: 2.04 Total: -1.06 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -1.26 Total: -1.54 kcal Total: -30.86 0.37 -30.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.688 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds