Wall clock time and date at job start Tue Mar 9 2021 13:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81402 * 102.99870 * 2 1 4 4 C 1.53005 * 109.46924 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.84665 * 43.80565 * 4 3 2 6 6 C 1.53781 * 113.61158 * 175.00056 * 4 3 2 7 7 C 1.53784 * 87.07783 * 140.06544 * 6 4 3 8 8 H 1.09001 * 113.61442 * 219.93036 * 7 6 4 9 9 N 1.46496 * 113.61657 * 89.11457 * 7 6 4 10 10 C 1.34777 * 120.00271 * 154.99545 * 9 7 6 11 11 O 1.21278 * 119.99854 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47107 * 180.02562 * 12 10 9 14 14 C 1.46902 * 111.00255 * 293.95458 * 13 12 10 15 15 C 1.39669 * 110.99989 * 170.00090 * 13 12 10 16 16 C 1.38900 * 120.07638 * 240.00226 * 15 13 12 17 17 C 1.50696 * 120.03361 * 359.97438 * 16 15 13 18 18 O 1.42907 * 109.47136 * 284.99884 * 17 16 15 19 19 Si 1.86305 * 109.47124 * 165.00084 * 17 16 15 20 20 C 1.38119 * 119.92545 * 179.97438 * 16 15 13 21 21 C 1.38259 * 120.07604 * 0.02562 * 20 16 15 22 22 C 1.50705 * 119.92575 * 179.97438 * 21 20 16 23 23 F 1.39906 * 109.46971 * 89.99897 * 22 21 20 24 24 F 1.39892 * 109.47320 * 209.99426 * 22 21 20 25 25 F 1.39895 * 109.47166 * 330.00263 * 22 21 20 26 26 C 1.38306 * 120.15092 * 359.97286 * 21 20 16 27 27 C 1.38081 * 120.07322 * 359.74712 * 26 21 20 28 28 C 1.53780 * 87.08167 * 334.56489 * 7 6 4 29 29 H 1.09002 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47319 * 300.00176 * 1 2 3 31 31 H 1.09005 * 109.47180 * 60.00048 * 1 2 3 32 32 H 1.08995 * 109.47114 * 60.00119 * 3 2 1 33 33 H 1.08998 * 109.47197 * 299.99962 * 3 2 1 34 34 H 1.08995 * 113.61220 * 25.51549 * 6 4 3 35 35 H 1.09001 * 113.61268 * 254.60887 * 6 4 3 36 36 H 0.97005 * 120.00266 * 335.00128 * 9 7 6 37 37 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 38 38 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 39 39 H 1.09005 * 109.46528 * 59.99744 * 14 13 12 40 40 H 1.09000 * 109.46785 * 179.97438 * 14 13 12 41 41 H 1.08997 * 109.47044 * 300.00388 * 14 13 12 42 42 H 1.08995 * 109.47507 * 44.99935 * 17 16 15 43 43 H 0.96700 * 113.99552 * 60.00330 * 18 17 16 44 44 H 1.48494 * 109.99754 * 299.99899 * 19 17 16 45 45 H 1.48498 * 109.99788 * 61.31946 * 19 17 16 46 46 H 1.08005 * 119.96143 * 179.97438 * 20 16 15 47 47 H 1.08004 * 119.96295 * 180.02562 * 26 21 20 48 48 H 1.08002 * 120.03847 * 180.27180 * 27 26 21 49 49 H 1.09001 * 113.61356 * 139.97819 * 28 7 6 50 50 H 1.08995 * 113.61962 * 270.87997 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.2448 1.2673 -0.6944 6 6 4.1962 3.4041 -0.1221 7 6 5.2881 3.0697 0.9079 8 1 5.4540 3.8596 1.6404 9 7 6.5315 2.5807 0.3072 10 6 7.6991 2.7218 0.9655 11 8 7.7202 3.2533 2.0554 12 6 8.9783 2.2193 0.3473 13 7 10.1005 2.4897 1.2559 14 6 10.3255 3.9342 1.3993 15 6 11.2607 1.8427 0.8247 16 6 11.8830 0.9097 1.6441 17 6 11.3073 0.5942 3.0006 18 8 11.5912 1.6679 3.9000 19 14 12.0701 -0.9770 3.6489 20 6 13.0300 0.2714 1.2143 21 6 13.5591 0.5606 -0.0299 22 6 14.8110 -0.1374 -0.4952 23 9 14.4657 -1.3114 -1.1735 24 9 15.5228 0.7056 -1.3552 25 9 15.6065 -0.4548 0.6109 26 6 12.9420 1.4891 -0.8484 27 6 11.7919 2.1267 -0.4273 28 6 4.3626 1.9478 1.4078 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8031 2.2371 0.8900 33 1 1.8031 2.2371 -0.8900 34 1 3.4596 4.1214 0.2397 35 1 4.5882 3.6586 -1.1068 36 1 6.5146 2.1553 -0.5644 37 1 9.1478 2.7284 -0.6015 38 1 8.9013 1.1458 0.1750 39 1 9.4282 4.4034 1.8028 40 1 11.1614 4.1061 2.0775 41 1 10.5536 4.3649 0.4244 42 1 10.2281 0.4664 2.9166 43 1 11.2236 2.5190 3.6249 44 1 11.7821 -2.1012 2.7225 45 1 13.5376 -0.8051 3.7982 46 1 13.5145 -0.4539 1.8512 47 1 13.3577 1.7124 -1.8199 48 1 11.3080 2.8484 -1.0687 49 1 4.8889 1.0267 1.6580 50 1 3.6715 2.2669 2.1879 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_6406254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:28 Heat of formation + Delta-G solvation = -139.561596 kcal Electronic energy + Delta-G solvation = -36547.128236 eV Core-core repulsion = 31253.871753 eV Total energy + Delta-G solvation = -5293.256483 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.137 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -51.38133 -48.90730 -48.84166 -41.89822 -41.11519 -39.58567 -37.67404 -37.56180 -34.64716 -33.11641 -32.25734 -30.87084 -29.76969 -29.03699 -27.71177 -27.00045 -26.68247 -25.27813 -24.01763 -23.35760 -22.22919 -21.61975 -20.23356 -19.73501 -19.68360 -19.57046 -18.58981 -18.18969 -17.73845 -17.35421 -17.04355 -16.96133 -16.47313 -16.31625 -16.14749 -15.79524 -15.76755 -15.68961 -15.50912 -15.39140 -15.26938 -15.10039 -15.01314 -15.00105 -14.94683 -14.81396 -14.69132 -14.33702 -14.08951 -13.99175 -13.88600 -13.71494 -13.58386 -13.34606 -13.31111 -13.08379 -12.90670 -12.77444 -12.57340 -12.31083 -12.06122 -11.48070 -11.45112 -11.20381 -11.08471 -10.91710 -10.87772 -10.36958 -10.20201 -10.05580 -9.69296 -8.69338 -4.89949 -0.49526 -0.12480 0.74887 1.30326 1.42258 1.55672 1.58665 1.68257 1.86333 1.87761 2.05675 2.47463 2.65909 2.77576 3.17997 3.40451 3.45836 3.46998 3.58739 3.62723 3.75897 3.80232 3.84408 3.94187 3.96748 4.04102 4.12721 4.24755 4.28733 4.29981 4.33568 4.34419 4.41304 4.44780 4.46448 4.54318 4.54862 4.76715 4.79527 4.80288 4.84668 4.86788 4.87259 4.96851 5.05057 5.06401 5.09018 5.22797 5.26512 5.53390 5.63875 6.01266 6.53510 6.59807 7.25411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.323 6.323 3 C -0.063 4.063 4 C -0.089 4.089 5 H 0.098 0.902 6 C -0.120 4.120 7 C 0.119 3.881 8 H 0.088 0.912 9 N -0.703 5.703 10 C 0.518 3.482 11 O -0.556 6.556 12 C 0.038 3.962 13 N -0.503 5.503 14 C 0.022 3.978 15 C 0.136 3.864 16 C -0.099 4.099 17 C -0.071 4.071 18 O -0.544 6.544 19 Si 0.787 3.213 20 C -0.084 4.084 21 C -0.187 4.187 22 C 0.507 3.493 23 F -0.179 7.179 24 F -0.173 7.173 25 F -0.185 7.185 26 C -0.052 4.052 27 C -0.134 4.134 28 C -0.143 4.143 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.415 0.585 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.372 0.628 44 H -0.262 1.262 45 H -0.287 1.287 46 H 0.126 0.874 47 H 0.161 0.839 48 H 0.167 0.833 49 H 0.059 0.941 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 3.421 -4.998 9.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.098 6.098 3 C -0.211 4.211 4 C -0.108 4.108 5 H 0.116 0.884 6 C -0.160 4.160 7 C 0.013 3.987 8 H 0.106 0.894 9 N -0.356 5.356 10 C 0.304 3.696 11 O -0.433 6.433 12 C -0.091 4.091 13 N -0.224 5.224 14 C -0.124 4.124 15 C 0.042 3.958 16 C -0.100 4.100 17 C -0.180 4.180 18 O -0.351 6.351 19 Si 0.689 3.311 20 C -0.102 4.102 21 C -0.189 4.189 22 C 0.453 3.547 23 F -0.160 7.160 24 F -0.154 7.154 25 F -0.167 7.167 26 C -0.071 4.071 27 C -0.154 4.154 28 C -0.182 4.182 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.251 0.749 37 H 0.120 0.880 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.222 0.778 44 H -0.187 1.187 45 H -0.214 1.214 46 H 0.143 0.857 47 H 0.178 0.822 48 H 0.185 0.815 49 H 0.078 0.922 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.006 1.632 -3.587 7.183 hybrid contribution -0.450 1.752 -2.219 2.862 sum -6.456 3.383 -5.805 9.318 Atomic orbital electron populations 1.23399 0.91884 1.07115 1.05696 1.87214 1.10142 1.14248 1.98181 1.23440 0.99639 0.92292 1.05689 1.22331 0.92213 0.98148 0.98107 0.88409 1.23333 0.96973 0.95618 1.00037 1.21758 0.83243 0.96850 0.96827 0.89410 1.45550 1.05699 1.61436 1.22892 1.20661 0.85455 0.78287 0.85148 1.90709 1.86907 1.43974 1.21740 1.22160 0.87576 1.04329 0.95008 1.59153 1.02024 1.12189 1.49043 1.22665 1.03772 0.84263 1.01674 1.18823 0.91239 0.93820 0.91958 1.20324 0.94774 0.96924 0.97995 1.25191 1.04716 1.00313 0.87744 1.86676 1.79869 1.20244 1.48273 0.92372 0.77331 0.73098 0.88301 1.20785 0.95474 0.99082 0.94856 1.19981 0.97121 1.03732 0.98047 1.18396 0.84269 0.77072 0.74966 1.93235 1.92103 1.49949 1.80724 1.93202 1.80352 1.70824 1.71059 1.93194 1.76443 1.93279 1.53763 1.21136 0.94193 0.92097 0.99628 1.21967 0.96114 1.00715 0.96567 1.23477 0.98632 0.99080 0.97020 0.87858 0.89768 0.89585 0.89368 0.88869 0.87527 0.89136 0.74861 0.87973 0.86256 0.89599 0.90994 0.93274 0.89285 0.77846 1.18743 1.21395 0.85691 0.82163 0.81543 0.92249 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.42 10.76 113.37 1.22 1.64 16 2 S -0.32 -0.20 22.37 -56.49 -1.26 -1.46 16 3 C -0.06 0.32 5.78 71.98 0.42 0.73 16 4 C -0.09 0.57 3.53 -10.27 -0.04 0.53 16 5 H 0.10 -0.58 8.13 -2.39 -0.02 -0.60 16 6 C -0.12 1.07 7.39 31.12 0.23 1.30 16 7 C 0.12 -0.55 4.32 45.52 0.20 -0.35 16 8 H 0.09 -0.02 7.46 -2.39 -0.02 -0.04 16 9 N -0.70 4.50 5.26 -440.04 -2.32 2.19 16 10 C 0.52 -1.03 7.56 87.66 0.66 -0.37 16 11 O -0.56 -3.68 13.91 -3.02 -0.04 -3.73 16 12 C 0.04 -0.26 5.03 85.56 0.43 0.17 16 13 N -0.50 1.32 3.22 -724.42 -2.33 -1.01 16 14 C 0.02 -0.07 8.63 127.69 1.10 1.04 16 15 C 0.14 -0.20 4.61 38.22 0.18 -0.02 16 16 C -0.10 -0.29 5.28 -19.74 -0.10 -0.39 16 17 C -0.07 -0.23 2.30 71.23 0.16 -0.06 16 18 O -0.54 -3.07 12.65 -148.98 -1.89 -4.95 16 19 Si 0.79 2.13 30.41 68.60 2.09 4.22 16 20 C -0.08 -0.42 8.01 22.25 0.18 -0.24 16 21 C -0.19 -0.59 5.46 -19.84 -0.11 -0.69 16 22 C 0.51 2.70 3.36 71.24 0.24 2.94 16 23 F -0.18 -1.15 17.30 44.97 0.78 -0.37 16 24 F -0.17 -0.80 16.46 44.97 0.74 -0.06 16 25 F -0.19 -1.56 16.46 44.97 0.74 -0.82 16 26 C -0.05 0.12 9.39 22.25 0.21 0.33 16 27 C -0.13 0.65 8.70 22.40 0.19 0.85 16 28 C -0.14 0.49 7.43 31.12 0.23 0.72 16 29 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.09 -0.50 7.85 -2.39 -0.02 -0.52 16 33 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.11 -1.06 8.10 -2.39 -0.02 -1.08 16 35 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 36 H 0.41 -4.89 8.70 -92.70 -0.81 -5.70 16 37 H 0.10 -1.26 7.46 -2.39 -0.02 -1.28 16 38 H 0.12 -1.03 8.06 -2.39 -0.02 -1.04 16 39 H 0.09 0.07 5.88 -2.38 -0.01 0.06 16 40 H 0.07 -0.17 7.53 -2.39 -0.02 -0.19 16 41 H 0.05 -0.32 7.49 -2.39 -0.02 -0.34 16 42 H 0.09 0.18 7.78 -2.39 -0.02 0.16 16 43 H 0.37 1.11 7.59 -74.06 -0.56 0.55 16 44 H -0.26 -1.29 7.11 99.48 0.71 -0.58 16 45 H -0.29 -2.52 6.81 99.48 0.68 -1.84 16 46 H 0.13 0.87 4.48 -2.91 -0.01 0.86 16 47 H 0.16 -1.00 7.60 -2.91 -0.02 -1.02 16 48 H 0.17 -1.81 7.17 -2.91 -0.02 -1.83 16 49 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 50 H 0.09 -0.29 7.90 -2.39 -0.02 -0.31 16 Total: 0.00 -17.23 427.49 1.55 -15.68 By element: Atomic # 1 Polarization: -17.44 SS G_CDS: -0.36 Total: -17.80 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.40 Total: 8.11 kcal Atomic # 7 Polarization: 5.83 SS G_CDS: -4.65 Total: 1.18 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -1.93 Total: -8.68 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 2.26 Total: -1.25 kcal Atomic # 14 Polarization: 2.13 SS G_CDS: 2.09 Total: 4.22 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -1.26 Total: -1.46 kcal Total: -17.23 1.55 -15.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_6406254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.877 kcal (2) G-P(sol) polarization free energy of solvation -17.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds