Wall clock time and date at job start Tue Mar 9 2021 13:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 102.99772 * 2 1 4 4 C 1.52999 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.85276 * 316.19919 * 4 3 2 6 6 C 1.53778 * 113.61460 * 87.50532 * 4 3 2 7 7 C 1.53775 * 87.08414 * 139.98384 * 6 4 3 8 8 H 1.09006 * 113.69115 * 220.01365 * 7 6 4 9 9 N 1.46489 * 113.61843 * 89.11471 * 7 6 4 10 10 C 1.34778 * 119.99973 * 107.50228 * 9 7 6 11 11 O 1.21693 * 119.99881 * 0.02562 * 10 9 7 12 12 C 1.46678 * 119.99985 * 180.02562 * 10 9 7 13 13 C 1.37871 * 126.23273 * 180.02562 * 12 10 9 14 14 C 1.39845 * 107.08473 * 179.72886 * 13 12 10 15 15 C 1.35451 * 107.86192 * 0.41211 * 14 13 12 16 16 C 1.50699 * 125.56123 * 179.84555 * 15 14 13 17 17 O 1.42898 * 109.46964 * 119.69426 * 16 15 14 18 18 Si 1.86301 * 109.47146 * 359.69343 * 16 15 14 19 19 N 1.35531 * 108.87256 * 359.58359 * 15 14 13 20 20 C 1.53780 * 87.07877 * 334.56472 * 7 6 4 21 21 H 1.09004 * 109.47581 * 60.00028 * 1 2 3 22 22 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47554 * 299.99766 * 1 2 3 24 24 H 1.09005 * 109.46883 * 60.00265 * 3 2 1 25 25 H 1.08995 * 109.47247 * 299.99851 * 3 2 1 26 26 H 1.08999 * 113.61399 * 25.42778 * 6 4 3 27 27 H 1.09004 * 113.61247 * 254.52977 * 6 4 3 28 28 H 0.96999 * 120.00357 * 287.50730 * 9 7 6 29 29 H 1.08002 * 126.45945 * 359.97438 * 13 12 10 30 30 H 1.08000 * 126.06573 * 180.25714 * 14 13 12 31 31 H 1.09002 * 109.46959 * 239.69396 * 16 15 14 32 32 H 0.96708 * 113.99549 * 180.02562 * 17 16 15 33 33 H 1.48498 * 110.00005 * 60.00183 * 18 16 15 34 34 H 1.48501 * 110.00049 * 181.31845 * 18 16 15 35 35 H 0.97004 * 125.67536 * 180.30438 * 19 15 14 36 36 H 1.09005 * 113.61329 * 139.98207 * 20 7 6 37 37 H 1.09000 * 113.61967 * 270.88797 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9400 0.0006 5 1 4.2443 1.2675 0.6962 6 6 4.3618 1.9484 -1.4068 7 6 5.2874 3.0702 -0.9071 8 1 5.4528 3.8604 -1.6396 9 7 6.5312 2.5812 -0.3072 10 6 7.6984 2.7227 -0.9662 11 8 7.7190 3.2570 -2.0594 12 6 8.9437 2.2326 -0.3658 13 6 10.2025 2.3101 -0.9226 14 6 11.0911 1.7301 -0.0118 15 6 10.3741 1.3094 1.0576 16 6 10.9373 0.6227 2.2751 17 8 10.6593 1.4080 3.4362 18 14 12.7803 0.4299 2.0825 19 7 9.0684 1.6120 0.8566 20 6 4.1961 3.4042 0.1235 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8031 2.2371 0.8901 25 1 1.8031 2.2372 -0.8900 26 1 3.6702 2.2676 -2.1864 27 1 4.8881 1.0274 -1.6576 28 1 6.5148 2.1556 0.5642 29 1 10.4554 2.7414 -1.8800 30 1 12.1591 1.6325 -0.1397 31 1 10.4785 -0.3601 2.3828 32 1 10.9941 1.0257 4.2590 33 1 13.4178 1.7629 1.9348 34 1 13.3434 -0.2744 3.2624 35 1 8.3427 1.4232 1.4719 36 1 4.5885 3.6585 1.1081 37 1 3.4591 4.1215 -0.2378 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_6580494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:32 Heat of formation + Delta-G solvation = 2.726341 kcal Electronic energy + Delta-G solvation = -19616.942755 eV Core-core repulsion = 16488.594883 eV Total energy + Delta-G solvation = -3128.347872 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.47416 -41.06644 -39.19243 -37.89763 -34.76656 -32.18292 -31.58629 -30.59100 -29.75748 -26.93847 -26.85632 -24.28221 -23.06511 -21.57975 -21.09955 -20.32536 -19.65252 -18.73463 -17.50375 -16.98408 -16.88677 -16.38285 -16.17490 -15.93793 -15.57356 -15.18371 -15.06876 -14.88882 -14.57940 -14.47467 -14.13392 -14.04776 -13.76547 -13.67061 -13.51444 -13.44534 -12.93425 -12.77008 -12.22939 -12.00386 -11.63302 -11.34499 -11.13050 -10.96784 -10.75715 -10.17976 -10.01906 -9.20034 -8.69513 -4.98990 0.39257 0.63790 1.10490 1.54272 1.56790 1.59811 1.88400 1.97404 2.14242 2.41165 3.09290 3.29653 3.40401 3.58257 3.67745 3.69961 3.82197 4.08157 4.11060 4.12673 4.17233 4.25202 4.31934 4.39416 4.44739 4.57872 4.60973 4.70917 4.73419 4.89882 4.95413 5.01916 5.05349 5.14760 5.46615 5.66920 5.87275 6.19464 6.25519 6.44078 7.14125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.075 4.075 4 C -0.096 4.096 5 H 0.097 0.903 6 C -0.142 4.142 7 C 0.121 3.879 8 H 0.110 0.890 9 N -0.715 5.715 10 C 0.594 3.406 11 O -0.521 6.521 12 C -0.052 4.052 13 C -0.095 4.095 14 C -0.197 4.197 15 C 0.070 3.930 16 C -0.063 4.063 17 O -0.542 6.542 18 Si 0.714 3.286 19 N -0.524 5.524 20 C -0.136 4.136 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.395 0.605 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.078 0.922 32 H 0.385 0.615 33 H -0.250 1.250 34 H -0.260 1.260 35 H 0.416 0.584 36 H 0.077 0.923 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 -2.623 3.062 4.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.223 4.223 4 C -0.115 4.115 5 H 0.115 0.885 6 C -0.180 4.180 7 C 0.016 3.984 8 H 0.128 0.872 9 N -0.366 5.366 10 C 0.382 3.618 11 O -0.397 6.397 12 C -0.165 4.165 13 C -0.122 4.122 14 C -0.222 4.222 15 C -0.048 4.048 16 C -0.172 4.172 17 O -0.350 6.350 18 Si 0.613 3.387 19 N -0.120 5.120 20 C -0.176 4.176 21 H 0.096 0.904 22 H 0.120 0.880 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.228 0.772 29 H 0.172 0.828 30 H 0.170 0.830 31 H 0.096 0.904 32 H 0.233 0.767 33 H -0.174 1.174 34 H -0.185 1.185 35 H 0.253 0.747 36 H 0.095 0.905 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.406 -2.543 2.217 3.398 hybrid contribution -1.870 0.764 2.041 2.871 sum -2.276 -1.780 4.258 5.145 Atomic orbital electron populations 1.23395 0.93957 1.06751 1.04972 1.87020 1.07614 1.11236 1.98053 1.23427 0.99250 0.94573 1.05080 1.22384 0.92673 0.97454 0.99033 0.88531 1.23506 0.98468 0.99797 0.96275 1.21825 0.82540 0.97581 0.96485 0.87238 1.45545 1.06590 1.62253 1.22240 1.17028 0.81646 0.78432 0.84661 1.90872 1.85996 1.43143 1.19652 1.20396 0.95836 1.10957 0.89354 1.21318 0.89720 1.00898 1.00239 1.20655 0.99774 1.06676 0.95051 1.19860 0.83539 1.04664 0.96714 1.24617 1.13467 0.95052 0.84040 1.86569 1.80893 1.50714 1.16823 0.94308 0.72037 0.84346 0.88014 1.41902 1.08505 1.45655 1.15979 1.23412 0.97863 0.96280 1.00019 0.90398 0.87956 0.90466 0.89858 0.89724 0.88614 0.90521 0.77164 0.82781 0.83031 0.90385 0.76660 1.17361 1.18460 0.74719 0.90450 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.16 10.76 101.05 1.09 1.25 16 2 S -0.27 -0.19 22.37 -107.50 -2.40 -2.59 16 3 C -0.08 0.11 5.78 37.16 0.21 0.33 16 4 C -0.10 0.18 3.53 -89.81 -0.32 -0.14 16 5 H 0.10 -0.15 8.13 -51.93 -0.42 -0.58 16 6 C -0.14 0.11 7.43 -25.92 -0.19 -0.09 16 7 C 0.12 -0.05 4.32 -67.13 -0.29 -0.34 16 8 H 0.11 0.13 7.46 -51.93 -0.39 -0.26 16 9 N -0.72 0.11 5.26 -54.33 -0.29 -0.18 16 10 C 0.59 1.81 7.79 -12.85 -0.10 1.71 16 11 O -0.52 -3.49 16.48 5.19 0.09 -3.40 16 12 C -0.05 -0.11 7.06 -81.98 -0.58 -0.69 16 13 C -0.10 -0.23 10.65 -39.11 -0.42 -0.64 16 14 C -0.20 -0.19 9.32 -39.98 -0.37 -0.56 16 15 C 0.07 0.04 6.51 -81.95 -0.53 -0.50 16 16 C -0.06 0.09 3.07 36.01 0.11 0.20 16 17 O -0.54 0.24 12.86 -35.23 -0.45 -0.21 16 18 Si 0.71 -1.46 30.54 -169.99 -5.19 -6.65 16 19 N -0.52 -0.06 5.99 -5.70 -0.03 -0.09 16 20 C -0.14 0.33 7.39 -25.92 -0.19 0.14 16 21 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 22 H 0.10 -0.17 8.14 -51.93 -0.42 -0.60 16 23 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 24 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 25 H 0.08 -0.16 7.84 -51.93 -0.41 -0.57 16 26 H 0.10 -0.11 7.90 -51.93 -0.41 -0.52 16 27 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.39 -1.00 7.83 -40.82 -0.32 -1.32 16 29 H 0.15 0.29 8.06 -52.49 -0.42 -0.14 16 30 H 0.15 -0.18 6.17 -52.49 -0.32 -0.50 16 31 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 32 H 0.38 -1.67 8.74 45.56 0.40 -1.28 16 33 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 34 H -0.26 0.06 7.11 56.52 0.40 0.46 16 35 H 0.42 -0.96 8.19 -40.82 -0.33 -1.30 16 36 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 37 H 0.10 -0.32 8.10 -51.93 -0.42 -0.74 16 LS Contribution 326.55 15.07 4.92 4.92 Total: 0.00 -8.10 326.55 -10.14 -18.24 By element: Atomic # 1 Polarization: -5.49 SS G_CDS: -5.20 Total: -10.69 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.58 Total: 0.66 kcal Atomic # 7 Polarization: 0.05 SS G_CDS: -0.32 Total: -0.27 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.37 Total: -3.62 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: -5.19 Total: -6.65 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -2.40 Total: -2.59 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -8.10 -10.14 -18.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_6580494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.963 kcal (2) G-P(sol) polarization free energy of solvation -8.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds