Wall clock time and date at job start Tue Mar 9 2021 13:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00234 * 2 1 4 4 C 1.52989 * 109.47621 * 180.02562 * 3 2 1 5 5 H 1.09009 * 112.84876 * 43.80303 * 4 3 2 6 6 C 1.53782 * 113.61676 * 175.00035 * 4 3 2 7 7 C 1.53781 * 87.08296 * 139.98215 * 6 4 3 8 8 H 1.09004 * 113.61222 * 219.93465 * 7 6 4 9 9 N 1.46503 * 113.61305 * 89.11511 * 7 6 4 10 10 C 1.34777 * 119.99479 * 155.00031 * 9 7 6 11 11 O 1.21287 * 120.00271 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99920 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47246 * 300.00328 * 12 10 9 14 14 O 1.42901 * 109.47615 * 179.97438 * 12 10 9 15 15 C 1.35899 * 117.00057 * 204.94978 * 14 12 10 16 16 C 1.38730 * 120.05160 * 174.27674 * 15 14 12 17 17 C 1.38147 * 119.94419 * 179.74543 * 16 15 14 18 18 C 1.38265 * 120.05043 * 0.50478 * 17 16 15 19 19 C 1.50702 * 119.94257 * 179.74724 * 18 17 16 20 20 O 1.42902 * 109.47286 * 245.02344 * 19 18 17 21 21 Si 1.86302 * 109.47133 * 5.02246 * 19 18 17 22 22 C 1.38261 * 120.11537 * 359.76763 * 18 17 16 23 23 C 1.38152 * 120.05362 * 359.97438 * 22 18 17 24 24 C 1.53777 * 87.08051 * 334.56950 * 7 6 4 25 25 H 1.08995 * 109.47318 * 60.00351 * 1 2 3 26 26 H 1.08997 * 109.46908 * 299.99904 * 1 2 3 27 27 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46713 * 300.00157 * 3 2 1 29 29 H 1.08997 * 109.46847 * 59.99488 * 3 2 1 30 30 H 1.09003 * 113.61024 * 254.52880 * 6 4 3 31 31 H 1.08995 * 113.61541 * 25.34777 * 6 4 3 32 32 H 0.96996 * 120.00144 * 335.00270 * 9 7 6 33 33 H 1.08999 * 109.47129 * 59.99784 * 12 10 9 34 34 H 1.08999 * 109.46613 * 299.99772 * 13 12 10 35 35 H 1.09003 * 109.47341 * 59.99542 * 13 12 10 36 36 H 1.08998 * 109.47649 * 179.97438 * 13 12 10 37 37 H 1.07999 * 120.03122 * 359.97438 * 16 15 14 38 38 H 1.07997 * 119.97286 * 180.23152 * 17 16 15 39 39 H 1.08996 * 109.47463 * 125.02286 * 19 18 17 40 40 H 0.96696 * 114.00371 * 179.97438 * 20 19 18 41 41 H 1.48496 * 110.00124 * 178.68475 * 21 19 18 42 42 H 1.48504 * 109.99863 * 300.00140 * 21 19 18 43 43 H 1.08001 * 119.97638 * 179.97438 * 22 18 17 44 44 H 1.07998 * 120.02327 * 179.97438 * 23 22 18 45 45 H 1.09006 * 113.61169 * 270.88527 * 24 7 6 46 46 H 1.08999 * 113.61771 * 139.98614 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8998 0.4287 -0.6963 6 6 4.2602 2.5354 -0.1235 7 6 5.2678 1.9993 0.9071 8 1 5.5809 2.7434 1.6396 9 7 6.3955 1.2820 0.3071 10 6 7.5682 1.1982 0.9661 11 8 7.6898 1.7162 2.0560 12 6 8.7281 0.4598 0.3492 13 6 8.3342 -0.9989 0.1086 14 8 9.8499 0.5113 1.2329 15 6 11.0819 0.3810 0.6743 16 6 12.2185 0.5397 1.4537 17 6 13.4697 0.4016 0.8847 18 6 13.5898 0.1156 -0.4627 19 6 14.9560 -0.0290 -1.0821 20 8 15.1598 1.0157 -2.0356 21 14 16.2558 0.0819 0.2479 22 6 12.4586 -0.0376 -1.2429 23 6 11.2051 0.0944 -0.6774 24 6 4.1453 1.0746 1.4067 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 4.6940 2.7101 -1.1081 31 1 3.6732 3.3803 0.2364 32 1 6.2982 0.8674 -0.5644 33 1 8.9921 0.9261 -0.6000 34 1 8.0702 -1.4652 1.0578 35 1 7.4787 -1.0379 -0.5657 36 1 9.1729 -1.5329 -0.3380 37 1 12.1252 0.7675 2.5053 38 1 14.3548 0.5214 1.4918 39 1 15.0283 -0.9954 -1.5811 40 1 16.0208 0.9853 -2.4745 41 1 17.6059 -0.0909 -0.3457 42 1 16.1677 1.3951 0.9358 43 1 12.5550 -0.2605 -2.2952 44 1 10.3218 -0.0249 -1.2873 45 1 3.5273 1.5201 2.1865 46 1 4.4861 0.0702 1.6576 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_10157680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:56 Heat of formation + Delta-G solvation = -88.816927 kcal Electronic energy + Delta-G solvation = -26673.892529 eV Core-core repulsion = 22724.946704 eV Total energy + Delta-G solvation = -3948.945825 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90824 -41.08479 -39.88762 -38.93589 -38.18104 -37.34121 -34.88379 -33.03584 -32.09260 -31.47941 -29.62057 -27.05086 -26.71571 -26.59708 -25.49985 -24.25234 -23.44821 -22.43111 -21.52271 -20.35509 -19.46774 -18.66532 -18.47139 -17.47581 -17.29508 -16.92177 -16.84848 -16.81349 -16.57319 -16.31644 -15.96289 -15.74627 -15.60117 -15.15686 -14.75481 -14.44515 -14.36679 -14.27096 -13.92428 -13.91372 -13.82062 -13.59814 -13.44642 -13.26913 -12.91907 -12.84058 -12.41354 -12.38143 -12.09980 -11.96349 -11.82215 -11.69724 -11.59244 -11.30391 -10.97365 -10.59084 -10.46687 -10.18759 -10.04611 -9.22792 -4.92656 0.23213 0.32301 1.31198 1.33832 1.47041 1.58986 1.94607 2.45153 2.60710 2.79516 3.40206 3.43078 3.45557 3.59616 3.64147 3.77141 3.81198 3.84803 3.88337 3.92776 3.96105 4.23947 4.32330 4.35093 4.39500 4.47492 4.48169 4.58059 4.60001 4.62023 4.63735 4.67219 4.70196 4.75128 4.81821 4.85497 4.98215 5.00875 5.08215 5.08952 5.14649 5.17836 5.27755 5.49066 5.52268 5.66596 6.23299 6.24166 6.41343 6.60989 7.05220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.064 3.936 4 C -0.103 4.103 5 H 0.103 0.897 6 C -0.121 4.121 7 C 0.112 3.888 8 H 0.084 0.916 9 N -0.690 5.690 10 C 0.518 3.482 11 O -0.569 6.569 12 C 0.065 3.935 13 C -0.172 4.172 14 O -0.311 6.311 15 C 0.120 3.880 16 C -0.160 4.160 17 C -0.080 4.080 18 C -0.123 4.123 19 C -0.075 4.075 20 O -0.559 6.559 21 Si 0.753 3.247 22 C -0.056 4.056 23 C -0.207 4.207 24 C -0.145 4.145 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.419 0.581 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.099 0.901 40 H 0.394 0.606 41 H -0.285 1.285 42 H -0.303 1.303 43 H 0.143 0.857 44 H 0.157 0.843 45 H 0.092 0.908 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 -3.347 -6.009 7.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.012 4.012 4 C -0.121 4.121 5 H 0.122 0.878 6 C -0.159 4.159 7 C 0.006 3.994 8 H 0.103 0.897 9 N -0.344 5.344 10 C 0.304 3.696 11 O -0.447 6.447 12 C 0.005 3.995 13 C -0.229 4.229 14 O -0.225 6.225 15 C 0.075 3.925 16 C -0.178 4.178 17 C -0.098 4.098 18 C -0.124 4.124 19 C -0.184 4.184 20 O -0.369 6.369 21 Si 0.659 3.341 22 C -0.074 4.074 23 C -0.225 4.225 24 C -0.184 4.184 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.257 0.743 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.117 0.883 40 H 0.245 0.755 41 H -0.212 1.212 42 H -0.231 1.231 43 H 0.161 0.839 44 H 0.174 0.826 45 H 0.110 0.890 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.627 -2.541 -4.548 5.835 hybrid contribution 0.056 0.668 -1.165 1.344 sum -2.571 -1.874 -5.713 6.539 Atomic orbital electron populations 1.22876 0.79933 1.03544 1.00712 1.87846 1.21003 1.29187 1.95584 1.22682 0.93213 0.84305 1.00976 1.22577 0.92937 0.98899 0.97706 0.87849 1.23281 0.95665 0.96953 0.99987 1.21877 0.85291 0.94955 0.97227 0.89747 1.45391 1.10177 1.55957 1.22879 1.20561 0.84305 0.79575 0.85131 1.90750 1.83572 1.47880 1.22450 1.22408 0.84034 0.99047 0.93995 1.22376 1.04750 0.91895 1.03902 1.86183 1.12297 1.87657 1.36336 1.19236 0.84427 0.96173 0.92706 1.20552 0.90092 1.06036 1.01145 1.20957 0.96915 0.97274 0.94620 1.19412 0.94753 1.04536 0.93667 1.24841 1.00661 0.93435 0.99512 1.86547 1.41439 1.52115 1.56764 0.94226 0.74648 0.84574 0.80604 1.21024 0.90738 0.95384 1.00299 1.21532 0.99903 1.07511 0.93600 1.23488 0.97132 1.00186 0.97551 0.93134 0.93525 0.89102 0.92041 0.92690 0.88765 0.87359 0.74263 0.85682 0.92074 0.87351 0.89289 0.84681 0.83948 0.88322 0.75531 1.21162 1.23096 0.83918 0.82561 0.88972 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 11.01 113.37 1.25 1.20 16 2 O -0.42 -1.09 10.70 -148.98 -1.59 -2.69 16 3 C 0.06 -0.15 5.77 71.98 0.42 0.26 16 4 C -0.10 0.43 3.89 -10.27 -0.04 0.39 16 5 H 0.10 -0.51 8.14 -2.38 -0.02 -0.53 16 6 C -0.12 0.77 7.39 31.12 0.23 1.00 16 7 C 0.11 -0.10 4.32 45.52 0.20 0.10 16 8 H 0.08 0.35 7.46 -2.39 -0.02 0.34 16 9 N -0.69 1.56 5.15 -440.03 -2.27 -0.70 16 10 C 0.52 2.68 7.23 87.66 0.63 3.31 16 11 O -0.57 -9.32 16.10 15.99 0.26 -9.07 16 12 C 0.06 0.03 2.64 29.85 0.08 0.11 16 13 C -0.17 0.85 9.07 71.98 0.65 1.50 16 14 O -0.31 -2.55 9.33 -73.38 -0.68 -3.23 16 15 C 0.12 0.69 6.60 22.50 0.15 0.84 16 16 C -0.16 -0.96 9.99 22.37 0.22 -0.74 16 17 C -0.08 -0.29 8.66 22.25 0.19 -0.10 16 18 C -0.12 -0.35 5.38 -19.85 -0.11 -0.46 16 19 C -0.08 0.04 2.79 71.24 0.20 0.23 16 20 O -0.56 -1.19 12.81 -148.98 -1.91 -3.10 16 21 Si 0.75 -0.70 29.85 68.60 2.05 1.35 16 22 C -0.06 -0.08 9.68 22.25 0.22 0.13 16 23 C -0.21 -0.20 8.24 22.36 0.18 -0.01 16 24 C -0.14 0.11 7.43 31.12 0.23 0.34 16 25 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.06 -0.28 8.14 -2.38 -0.02 -0.30 16 29 H 0.05 -0.17 7.84 -2.39 -0.02 -0.19 16 30 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H 0.11 -0.83 8.10 -2.39 -0.02 -0.85 16 32 H 0.42 -3.94 8.12 -92.71 -0.75 -4.69 16 33 H 0.13 -0.64 6.31 -2.39 -0.02 -0.65 16 34 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.11 -1.20 7.57 -2.39 -0.02 -1.22 16 36 H 0.09 -0.56 6.91 -2.39 -0.02 -0.58 16 37 H 0.14 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.14 0.06 4.86 -2.91 -0.01 0.05 16 39 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 40 H 0.39 -2.31 8.74 -74.06 -0.65 -2.96 16 41 H -0.28 -0.80 7.11 99.48 0.71 -0.09 16 42 H -0.30 -2.13 7.05 99.48 0.70 -1.42 16 43 H 0.14 -0.29 8.06 -2.91 -0.02 -0.31 16 44 H 0.16 -0.82 5.43 -2.91 -0.02 -0.83 16 45 H 0.09 -0.07 7.90 -2.38 -0.02 -0.09 16 46 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 Total: 0.00 -25.19 376.66 0.18 -25.01 By element: Atomic # 1 Polarization: -15.31 SS G_CDS: -0.37 Total: -15.68 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 4.70 Total: 8.11 kcal Atomic # 7 Polarization: 1.56 SS G_CDS: -2.27 Total: -0.70 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -3.93 Total: -18.09 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: 2.05 Total: 1.35 kcal Total: -25.19 0.18 -25.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_10157680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.808 kcal (2) G-P(sol) polarization free energy of solvation -25.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds