Wall clock time and date at job start Tue Mar 9 2021 13:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00178 * 2 1 4 4 C 1.53006 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.09003 * 112.90394 * 43.75056 * 4 3 2 6 6 C 1.53773 * 113.61597 * 174.99942 * 4 3 2 7 7 C 1.53781 * 87.08088 * 139.98387 * 6 4 3 8 8 H 1.09005 * 113.61524 * 219.93686 * 7 6 4 9 9 N 1.46499 * 113.61459 * 89.11951 * 7 6 4 10 10 C 1.34772 * 120.00318 * 156.52930 * 9 7 6 11 11 O 1.21625 * 119.99782 * 359.97438 * 10 9 7 12 12 C 1.47301 * 120.00162 * 179.97438 * 10 9 7 13 13 C 1.40296 * 120.13071 * 179.97438 * 12 10 9 14 14 O 1.35652 * 120.12365 * 0.04158 * 13 12 10 15 15 C 1.42899 * 116.99860 * 179.97438 * 14 13 12 16 16 C 1.38446 * 119.75292 * 180.02562 * 13 12 10 17 17 C 1.38685 * 120.03503 * 0.02562 * 16 13 12 18 18 O 1.35713 * 119.86311 * 179.97438 * 17 16 13 19 19 C 1.42908 * 117.00115 * 359.97438 * 18 17 16 20 20 C 1.39184 * 120.27186 * 359.97438 * 17 16 13 21 21 C 1.50695 * 119.87516 * 179.97438 * 20 17 16 22 22 O 1.42898 * 109.47516 * 284.99610 * 21 20 17 23 23 Si 1.86309 * 109.46885 * 164.99889 * 21 20 17 24 24 C 1.37539 * 120.24211 * 359.97438 * 20 17 16 25 25 C 1.53776 * 87.17283 * 334.52584 * 7 6 4 26 26 H 1.09001 * 109.46881 * 59.99635 * 1 2 3 27 27 H 1.09004 * 109.47444 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47456 * 300.00276 * 1 2 3 29 29 H 1.09007 * 109.46697 * 60.00101 * 3 2 1 30 30 H 1.08992 * 109.47180 * 299.99940 * 3 2 1 31 31 H 1.09004 * 113.61509 * 25.43492 * 6 4 3 32 32 H 1.09000 * 113.69170 * 254.54436 * 6 4 3 33 33 H 0.97004 * 119.99530 * 336.52664 * 9 7 6 34 34 H 1.08998 * 109.47719 * 300.00563 * 15 14 13 35 35 H 1.08999 * 109.47109 * 60.00545 * 15 14 13 36 36 H 1.09006 * 109.47101 * 180.02562 * 15 14 13 37 37 H 1.08003 * 119.97987 * 180.26815 * 16 13 12 38 38 H 1.09001 * 109.46704 * 60.00311 * 19 18 17 39 39 H 1.09003 * 109.46917 * 179.97438 * 19 18 17 40 40 H 1.08998 * 109.46866 * 300.00066 * 19 18 17 41 41 H 1.08996 * 109.47693 * 44.99946 * 21 20 17 42 42 H 0.96706 * 113.99510 * 59.99865 * 22 21 20 43 43 H 1.48498 * 109.99776 * 299.99644 * 23 21 20 44 44 H 1.48504 * 109.99864 * 61.31714 * 23 21 20 45 45 H 1.07997 * 120.02051 * 179.97438 * 24 20 17 46 46 H 1.08997 * 113.61542 * 140.02180 * 25 7 6 47 47 H 1.09003 * 113.61695 * 270.92525 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9014 0.4279 -0.6934 6 6 4.2605 2.5351 -0.1221 7 6 5.2672 1.9993 0.9095 8 1 5.5798 2.7436 1.6420 9 7 6.3954 1.2818 0.3107 10 6 7.5578 1.1717 0.9838 11 8 7.6703 1.6684 2.0882 12 6 8.6919 0.4497 0.3818 13 6 9.9034 0.3339 1.0799 14 8 10.0345 0.8857 2.3122 15 6 11.2967 0.7271 2.9630 16 6 10.9644 -0.3459 0.5065 17 6 10.8284 -0.9091 -0.7535 18 8 11.8710 -1.5743 -1.3124 19 6 13.0752 -1.6538 -0.5470 20 6 9.6272 -0.7950 -1.4471 21 6 9.4894 -1.4099 -2.8160 22 8 10.1916 -0.6108 -3.7701 23 14 7.6872 -1.4923 -3.2812 24 6 8.5654 -0.1230 -0.8878 25 6 4.1454 1.0748 1.4110 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8463 -0.8899 31 1 3.6737 3.3801 0.2384 32 1 4.6953 2.7110 -1.1060 33 1 6.3057 0.8859 -0.5704 34 1 11.5075 -0.3343 3.0934 35 1 12.0789 1.1807 2.3544 36 1 11.2665 1.2137 3.9380 37 1 11.8973 -0.4410 1.0425 38 1 12.8738 -2.1637 0.3951 39 1 13.8260 -2.2106 -1.1078 40 1 13.4440 -0.6483 -0.3445 41 1 9.9085 -2.4161 -2.8062 42 1 11.1378 -0.5240 -3.5901 43 1 6.9460 -2.3208 -2.2967 44 1 7.1120 -0.1241 -3.3292 45 1 7.6351 -0.0362 -1.4293 46 1 4.4870 0.0710 1.6636 47 1 3.5272 1.5211 2.1900 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_12297780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:13 Heat of formation + Delta-G solvation = -123.909594 kcal Electronic energy + Delta-G solvation = -30270.186258 eV Core-core repulsion = 26001.036509 eV Total energy + Delta-G solvation = -4269.149749 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.28139 -41.24387 -40.27108 -39.53770 -38.47442 -38.20081 -37.04718 -34.60584 -32.34736 -31.88431 -29.68814 -29.05715 -28.22245 -27.01847 -26.68397 -26.14158 -24.97016 -23.69878 -22.86072 -21.79510 -20.44730 -20.07102 -18.89249 -18.60532 -17.84159 -17.50256 -17.37724 -17.27947 -16.97908 -16.76118 -16.66640 -16.46090 -16.34553 -15.89094 -15.85027 -15.74857 -15.41903 -14.93499 -14.47152 -14.33421 -14.23780 -13.98943 -13.79234 -13.64897 -13.51266 -13.41322 -12.86690 -12.70179 -12.61068 -12.59800 -12.41260 -12.24588 -11.88503 -11.79223 -11.66148 -11.41536 -11.34363 -11.20506 -10.93884 -10.61908 -10.24137 -10.05710 -9.32690 -4.83650 -0.44097 -0.06775 1.34291 1.54590 1.66836 1.88412 1.91863 1.96112 2.05777 2.43743 2.76016 3.26666 3.36412 3.41914 3.52926 3.55033 3.62960 3.76399 3.88109 3.93127 3.96919 4.03807 4.13951 4.21745 4.22970 4.27696 4.28513 4.34672 4.38521 4.45076 4.55881 4.56819 4.57979 4.61478 4.64278 4.66129 4.69178 4.74228 4.81016 4.83227 4.89434 4.94199 5.02659 5.09186 5.13138 5.49326 5.89621 6.15483 6.21352 6.32472 6.63590 7.05015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.068 3.932 4 C -0.107 4.107 5 H 0.091 0.909 6 C -0.122 4.122 7 C 0.112 3.888 8 H 0.091 0.909 9 N -0.707 5.707 10 C 0.564 3.436 11 O -0.557 6.557 12 C -0.231 4.231 13 C 0.218 3.782 14 O -0.304 6.304 15 C 0.009 3.991 16 C -0.303 4.303 17 C 0.213 3.787 18 O -0.310 6.310 19 C 0.011 3.989 20 C -0.199 4.199 21 C -0.075 4.075 22 O -0.545 6.545 23 Si 0.792 3.208 24 C -0.013 4.013 25 C -0.143 4.143 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.404 0.596 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.172 0.828 38 H 0.068 0.932 39 H 0.128 0.872 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.374 0.626 43 H -0.264 1.264 44 H -0.271 1.271 45 H 0.141 0.859 46 H 0.055 0.945 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 -2.111 -3.264 4.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.008 4.008 4 C -0.125 4.125 5 H 0.109 0.891 6 C -0.159 4.159 7 C 0.007 3.993 8 H 0.109 0.891 9 N -0.359 5.359 10 C 0.353 3.647 11 O -0.437 6.437 12 C -0.235 4.235 13 C 0.169 3.831 14 O -0.215 6.215 15 C -0.085 4.085 16 C -0.322 4.322 17 C 0.164 3.836 18 O -0.222 6.222 19 C -0.083 4.083 20 C -0.200 4.200 21 C -0.183 4.183 22 O -0.351 6.351 23 Si 0.692 3.308 24 C -0.032 4.032 25 C -0.182 4.182 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.240 0.760 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.189 0.811 38 H 0.087 0.913 39 H 0.146 0.854 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.223 0.777 43 H -0.190 1.190 44 H -0.197 1.197 45 H 0.158 0.842 46 H 0.074 0.926 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.184 -1.682 -2.535 3.265 hybrid contribution 1.407 0.288 1.286 1.928 sum 2.591 -1.394 -1.249 3.197 Atomic orbital electron populations 1.22888 0.79767 1.03573 1.00823 1.87853 1.21177 1.29157 1.95605 1.22647 0.92552 0.84380 1.01264 1.22610 0.93554 0.98699 0.97668 0.89071 1.23296 0.95774 0.97116 0.99749 1.21909 0.85170 0.94984 0.97255 0.89066 1.45552 1.11925 1.57139 1.21289 1.18074 0.82629 0.79274 0.84728 1.90804 1.83270 1.48866 1.20727 1.19162 0.94473 1.12233 0.97618 1.18922 0.91954 0.88005 0.84253 1.86368 1.37591 1.70685 1.26852 1.23523 0.82908 1.03430 0.98661 1.21481 1.01764 1.10406 0.98572 1.18790 0.87413 0.87570 0.89787 1.86049 1.21524 1.69060 1.45552 1.23544 0.83337 1.03681 0.97705 1.19684 0.92611 1.07602 1.00139 1.25272 1.12038 0.95761 0.85265 1.86678 1.25748 1.72926 1.49797 0.92346 0.69680 0.80462 0.88306 1.20833 0.97942 0.92179 0.92223 1.23538 0.97185 0.99956 0.97494 0.93059 0.89106 0.93339 0.92147 0.91860 0.86467 0.89483 0.75961 0.90804 0.90733 0.86749 0.81087 0.91322 0.85437 0.91068 0.89584 0.77747 1.18972 1.19716 0.84168 0.92626 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 11.01 113.37 1.25 1.24 16 2 O -0.42 -2.23 10.70 -148.98 -1.59 -3.83 16 3 C 0.07 0.04 5.78 71.98 0.42 0.45 16 4 C -0.11 -0.09 3.90 -10.18 -0.04 -0.13 16 5 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 6 C -0.12 0.19 7.38 31.12 0.23 0.42 16 7 C 0.11 0.51 4.30 45.52 0.20 0.70 16 8 H 0.09 0.72 7.50 -2.38 -0.02 0.70 16 9 N -0.71 -4.75 5.21 -443.42 -2.31 -7.06 16 10 C 0.56 7.32 7.76 86.63 0.67 7.99 16 11 O -0.56 -11.20 14.77 16.86 0.25 -10.95 16 12 C -0.23 -2.33 5.89 -20.00 -0.12 -2.45 16 13 C 0.22 1.90 6.70 22.82 0.15 2.05 16 14 O -0.30 -3.11 8.56 -68.70 -0.59 -3.70 16 15 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 16 C -0.30 -0.76 8.01 22.43 0.18 -0.58 16 17 C 0.21 0.57 6.62 22.60 0.15 0.72 16 18 O -0.31 0.36 9.36 -90.34 -0.85 -0.48 16 19 C 0.01 -0.09 9.80 113.37 1.11 1.02 16 20 C -0.20 -0.89 5.27 -19.80 -0.10 -0.99 16 21 C -0.08 -0.11 2.32 71.23 0.17 0.05 16 22 O -0.55 -1.39 12.65 -148.98 -1.89 -3.27 16 23 Si 0.79 -0.41 30.40 68.60 2.09 1.67 16 24 C -0.01 -0.08 8.14 22.50 0.18 0.10 16 25 C -0.14 -0.54 7.45 31.21 0.23 -0.30 16 26 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.09 -0.14 8.14 -2.38 -0.02 -0.15 16 28 H 0.05 -0.09 8.14 -2.39 -0.02 -0.10 16 29 H 0.06 -0.07 7.85 -2.38 -0.02 -0.09 16 30 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.12 -0.56 8.10 -2.38 -0.02 -0.58 16 32 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.40 1.11 6.72 -92.71 -0.62 0.49 16 34 H 0.07 -0.31 7.66 -2.39 -0.02 -0.33 16 35 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 36 H 0.11 -0.28 8.14 -2.38 -0.02 -0.30 16 37 H 0.17 -0.65 4.50 -2.91 -0.01 -0.66 16 38 H 0.07 -0.63 7.64 -2.39 -0.02 -0.65 16 39 H 0.13 -1.48 8.14 -2.39 -0.02 -1.50 16 40 H 0.07 -0.68 7.65 -2.39 -0.02 -0.70 16 41 H 0.09 -0.06 7.82 -2.39 -0.02 -0.07 16 42 H 0.37 -0.56 8.59 -74.05 -0.64 -1.19 16 43 H -0.26 -0.67 7.11 99.48 0.71 0.04 16 44 H -0.27 -0.74 6.80 99.48 0.68 -0.06 16 45 H 0.14 0.50 3.24 -2.91 -0.01 0.49 16 46 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.10 0.20 7.90 -2.39 -0.02 0.18 16 Total: 0.00 -21.70 381.80 0.66 -21.05 By element: Atomic # 1 Polarization: -4.61 SS G_CDS: -0.24 Total: -4.85 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 5.79 Total: 11.41 kcal Atomic # 7 Polarization: -4.75 SS G_CDS: -2.31 Total: -7.06 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -4.66 Total: -22.23 kcal Atomic # 14 Polarization: -0.41 SS G_CDS: 2.09 Total: 1.67 kcal Total: -21.70 0.66 -21.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_12297780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.862 kcal (2) G-P(sol) polarization free energy of solvation -21.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds