Wall clock time and date at job start Tue Mar 9 2021 13:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00132 * 2 1 4 4 C 1.52998 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.90574 * 43.74975 * 4 3 2 6 6 C 1.53777 * 113.61660 * 175.00200 * 4 3 2 7 7 C 1.53785 * 87.08389 * 139.97959 * 6 4 3 8 8 H 1.08997 * 113.61549 * 219.93868 * 7 6 4 9 9 N 1.46496 * 113.61213 * 89.11449 * 7 6 4 10 10 C 1.34779 * 120.00153 * 155.00320 * 9 7 6 11 11 O 1.21626 * 119.99289 * 0.02562 * 10 9 7 12 12 C 1.47284 * 120.00453 * 179.97438 * 10 9 7 13 13 C 1.40368 * 120.04901 * 179.97438 * 12 10 9 14 14 O 1.35679 * 120.13530 * 0.04411 * 13 12 10 15 15 C 1.38317 * 119.72790 * 180.02562 * 13 12 10 16 16 C 1.39565 * 119.81288 * 359.97438 * 15 13 12 17 17 C 1.47570 * 119.95598 * 180.02562 * 16 15 13 18 18 C 1.36115 * 125.94235 * 180.02562 * 17 16 15 19 19 C 1.40797 * 106.72767 * 179.97438 * 18 17 16 20 20 C 1.34828 * 107.05339 * 0.02562 * 19 18 17 21 21 C 1.50705 * 125.65415 * 179.97438 * 20 19 18 22 22 O 1.42897 * 109.46859 * 65.01093 * 21 20 19 23 23 Si 1.86296 * 109.47158 * 185.01393 * 21 20 19 24 24 O 1.34228 * 108.69468 * 359.97438 * 20 19 18 25 25 C 1.39962 * 120.09136 * 0.27655 * 16 15 13 26 26 C 1.36395 * 120.27693 * 359.44638 * 25 16 15 27 27 C 1.53784 * 87.07821 * 334.56705 * 7 6 4 28 28 H 1.08998 * 109.47052 * 60.00052 * 1 2 3 29 29 H 1.08997 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47027 * 300.00149 * 1 2 3 31 31 H 1.09000 * 109.47215 * 59.99829 * 3 2 1 32 32 H 1.09006 * 109.47469 * 300.00103 * 3 2 1 33 33 H 1.09000 * 113.61642 * 25.43141 * 6 4 3 34 34 H 1.09002 * 113.61567 * 254.53106 * 6 4 3 35 35 H 0.96999 * 120.00394 * 334.99790 * 9 7 6 36 36 H 0.96699 * 113.99980 * 269.97587 * 14 13 12 37 37 H 1.08002 * 120.09547 * 179.97438 * 15 13 12 38 38 H 1.07994 * 126.63208 * 359.73553 * 18 17 16 39 39 H 1.08003 * 126.47242 * 179.97438 * 19 18 17 40 40 H 1.08997 * 109.46928 * 305.01679 * 21 20 19 41 41 H 0.96706 * 113.99791 * 60.00933 * 22 21 20 42 42 H 1.48498 * 109.99973 * 179.97438 * 23 21 20 43 43 H 1.48497 * 110.00121 * 301.31852 * 23 21 20 44 44 H 1.07998 * 119.86403 * 179.72504 * 25 16 15 45 45 H 1.07997 * 119.91262 * 180.27922 * 26 25 16 46 46 H 1.09001 * 113.61437 * 139.97689 * 27 7 6 47 47 H 1.08998 * 113.61654 * 270.88125 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9008 0.4283 -0.6952 6 6 4.2603 2.5353 -0.1234 7 6 5.2679 1.9992 0.9072 8 1 5.5809 2.7432 1.6397 9 7 6.3955 1.2819 0.3072 10 6 7.5683 1.1980 0.9662 11 8 7.6901 1.7175 2.0591 12 6 8.7019 0.4764 0.3633 13 6 9.9238 0.3889 1.0484 14 8 10.0641 0.9675 2.2676 15 6 10.9842 -0.2900 0.4758 16 6 10.8322 -0.8835 -0.7782 17 6 11.9612 -1.6090 -1.3918 18 6 11.9481 -2.2300 -2.6030 19 6 13.2281 -2.7872 -2.7865 20 6 13.9524 -2.4834 -1.6907 21 6 15.3868 -2.8775 -1.4487 22 8 16.2261 -2.2337 -2.4094 23 14 15.8931 -2.3564 0.2667 24 8 13.1843 -1.7718 -0.8509 25 6 9.6119 -0.7870 -1.4569 26 6 8.5621 -0.1233 -0.8932 27 6 4.1452 1.0746 1.4068 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.6738 3.3801 0.2379 34 1 4.6940 2.7102 -1.1080 35 1 6.2982 0.8672 -0.5642 36 1 10.3750 1.8826 2.2352 37 1 11.9272 -0.3606 0.9976 38 1 11.1157 -2.2878 -3.2885 39 1 13.5656 -3.3521 -3.6429 40 1 15.4876 -3.9586 -1.5447 41 1 16.1870 -1.2678 -2.3813 42 1 17.3055 -2.7399 0.5179 43 1 15.7298 -0.8884 0.4205 44 1 9.4997 -1.2439 -2.4290 45 1 7.6218 -0.0563 -1.4202 46 1 4.4861 0.0700 1.6576 47 1 3.5273 1.5199 2.1865 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_12807986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:05 Heat of formation + Delta-G solvation = -75.161844 kcal Electronic energy + Delta-G solvation = -30933.894743 eV Core-core repulsion = 26437.718053 eV Total energy + Delta-G solvation = -4496.176690 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.150 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.74830 -41.76043 -40.61989 -39.26623 -38.25393 -38.12231 -37.85469 -34.76202 -34.18163 -33.18749 -31.32964 -30.58097 -29.56239 -27.24866 -26.84369 -26.55143 -24.69078 -24.08884 -23.46781 -22.48525 -22.11104 -21.39053 -20.32716 -19.69133 -18.88242 -18.60057 -17.74177 -17.50297 -17.39053 -17.26021 -16.88135 -16.70097 -16.53807 -16.20838 -16.09648 -15.95411 -15.81916 -15.44851 -15.13404 -14.61745 -14.43436 -14.34788 -14.18615 -13.97616 -13.79954 -13.74299 -13.59816 -13.52024 -13.42538 -12.96190 -12.81851 -12.71748 -12.37163 -12.19525 -11.92653 -11.79409 -11.56138 -11.27541 -11.13953 -10.96188 -10.85165 -10.63530 -10.57833 -10.10867 -9.96189 -9.02394 -4.98731 -0.80620 0.13546 0.63428 1.12165 1.42334 1.44402 1.68687 1.87298 1.89912 2.00645 2.62759 2.80966 3.00566 3.20939 3.35151 3.47035 3.59024 3.62329 3.64978 3.85239 3.86310 3.97152 3.98653 4.00350 4.21363 4.35907 4.36311 4.40532 4.43245 4.48619 4.61122 4.61408 4.65028 4.69030 4.71780 4.76832 4.79276 4.84094 4.86140 4.90219 5.02336 5.05432 5.08958 5.12022 5.18348 5.21167 5.42793 5.52042 5.58282 5.95576 6.24793 6.31244 6.45160 6.68605 7.14629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.065 3.935 4 C -0.104 4.104 5 H 0.101 0.899 6 C -0.120 4.120 7 C 0.114 3.886 8 H 0.087 0.913 9 N -0.696 5.696 10 C 0.558 3.442 11 O -0.563 6.563 12 C -0.180 4.180 13 C 0.161 3.839 14 O -0.495 6.495 15 C -0.153 4.153 16 C 0.026 3.974 17 C 0.005 3.995 18 C -0.172 4.172 19 C -0.181 4.181 20 C -0.051 4.051 21 C -0.032 4.032 22 O -0.534 6.534 23 Si 0.760 3.240 24 O -0.177 6.177 25 C -0.109 4.109 26 C -0.051 4.051 27 C -0.147 4.147 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.408 0.592 37 H 0.139 0.861 38 H 0.182 0.818 39 H 0.167 0.833 40 H 0.157 0.843 41 H 0.390 0.610 42 H -0.280 1.280 43 H -0.295 1.295 44 H 0.170 0.830 45 H 0.171 0.829 46 H 0.057 0.943 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -0.100 -6.327 7.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.011 4.011 4 C -0.122 4.122 5 H 0.119 0.881 6 C -0.158 4.158 7 C 0.008 3.992 8 H 0.105 0.895 9 N -0.348 5.348 10 C 0.346 3.654 11 O -0.442 6.442 12 C -0.183 4.183 13 C 0.115 3.885 14 O -0.308 6.308 15 C -0.171 4.171 16 C 0.026 3.974 17 C -0.044 4.044 18 C -0.190 4.190 19 C -0.200 4.200 20 C -0.101 4.101 21 C -0.142 4.142 22 O -0.342 6.342 23 Si 0.665 3.335 24 O -0.074 6.074 25 C -0.127 4.127 26 C -0.070 4.070 27 C -0.186 4.186 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.253 0.747 36 H 0.268 0.732 37 H 0.156 0.844 38 H 0.200 0.800 39 H 0.185 0.815 40 H 0.174 0.826 41 H 0.240 0.760 42 H -0.207 1.207 43 H -0.222 1.222 44 H 0.187 0.813 45 H 0.188 0.812 46 H 0.075 0.925 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.351 -0.420 -4.727 5.809 hybrid contribution 0.225 1.287 -1.000 1.646 sum -3.126 0.868 -5.727 6.583 Atomic orbital electron populations 1.22876 0.79926 1.03524 1.00733 1.87850 1.21020 1.29246 1.95587 1.22684 0.93153 0.84279 1.01010 1.22578 0.92986 0.98993 0.97656 0.88063 1.23278 0.95672 0.96822 1.00021 1.21855 0.85316 0.94851 0.97176 0.89453 1.45458 1.10621 1.56007 1.22747 1.18244 0.83065 0.79513 0.84531 1.90819 1.83705 1.48133 1.21550 1.20510 0.94654 1.05639 0.97536 1.18487 0.91344 0.94399 0.84299 1.84732 1.89316 1.32702 1.24050 1.21569 0.99391 1.00657 0.95492 1.17952 0.91070 0.95260 0.93167 1.20570 0.84350 1.04801 0.94728 1.22251 0.99658 1.00467 0.96649 1.21841 0.93623 1.04536 1.00034 1.23163 0.95584 0.99795 0.91577 1.24450 0.82076 1.03060 1.04614 1.86640 1.64719 1.25624 1.57253 0.93607 0.81247 0.80769 0.77919 1.83933 1.21290 1.58295 1.43910 1.21053 0.90063 0.99897 1.01694 1.21162 1.00302 0.93515 0.91981 1.23503 0.97389 1.00086 0.97594 0.93086 0.89150 0.93513 0.92659 0.91951 0.87270 0.88760 0.74749 0.73173 0.84362 0.80049 0.81519 0.82560 0.76043 1.20661 1.22154 0.81253 0.81198 0.92461 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 11.01 113.37 1.25 1.20 16 2 O -0.42 -1.27 10.70 -148.98 -1.59 -2.86 16 3 C 0.06 -0.14 5.77 71.98 0.42 0.28 16 4 C -0.10 0.37 3.89 -10.27 -0.04 0.33 16 5 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 6 C -0.12 0.75 7.39 31.12 0.23 0.98 16 7 C 0.11 -0.06 4.32 45.52 0.20 0.14 16 8 H 0.09 0.33 7.46 -2.39 -0.02 0.31 16 9 N -0.70 0.75 5.21 -443.42 -2.31 -1.56 16 10 C 0.56 3.32 7.75 86.62 0.67 3.99 16 11 O -0.56 -8.20 14.74 16.88 0.25 -7.95 16 12 C -0.18 -0.49 5.89 -19.97 -0.12 -0.60 16 13 C 0.16 0.89 6.71 22.81 0.15 1.04 16 14 O -0.49 -4.00 11.56 -68.98 -0.80 -4.80 16 15 C -0.15 -0.53 9.65 22.61 0.22 -0.31 16 16 C 0.03 0.02 5.87 -20.08 -0.12 -0.10 16 17 C 0.00 0.01 7.02 24.24 0.17 0.18 16 18 C -0.17 0.28 10.26 22.40 0.23 0.51 16 19 C -0.18 0.08 10.78 22.11 0.24 0.32 16 20 C -0.05 -0.04 6.21 24.90 0.15 0.11 16 21 C -0.03 0.05 2.98 71.24 0.21 0.26 16 22 O -0.53 -0.34 12.88 -148.98 -1.92 -2.25 16 23 Si 0.76 -0.41 32.11 68.60 2.20 1.80 16 24 O -0.18 -0.58 8.79 -5.92 -0.05 -0.63 16 25 C -0.11 0.52 9.48 22.26 0.21 0.73 16 26 C -0.05 0.24 9.47 22.25 0.21 0.45 16 27 C -0.15 -0.01 7.43 31.12 0.23 0.22 16 28 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.06 -0.16 7.84 -2.39 -0.02 -0.18 16 32 H 0.06 -0.28 8.14 -2.38 -0.02 -0.30 16 33 H 0.11 -0.86 8.10 -2.39 -0.02 -0.88 16 34 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H 0.41 -3.17 6.71 -92.71 -0.62 -3.79 16 36 H 0.41 0.38 9.06 -74.06 -0.67 -0.30 16 37 H 0.14 0.47 7.90 -2.91 -0.02 0.45 16 38 H 0.18 -1.42 7.24 -2.91 -0.02 -1.44 16 39 H 0.17 -0.54 8.06 -2.91 -0.02 -0.56 16 40 H 0.16 -0.85 7.96 -2.39 -0.02 -0.87 16 41 H 0.39 -1.66 8.70 -74.05 -0.64 -2.31 16 42 H -0.28 -1.34 7.11 99.48 0.71 -0.63 16 43 H -0.29 -1.74 7.11 99.48 0.71 -1.03 16 44 H 0.17 -1.88 6.95 -2.91 -0.02 -1.90 16 45 H 0.17 -2.09 6.38 -2.91 -0.02 -2.11 16 46 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.09 -0.02 7.90 -2.39 -0.02 -0.04 16 Total: 0.00 -25.30 399.34 -0.56 -25.87 By element: Atomic # 1 Polarization: -16.48 SS G_CDS: -0.86 Total: -17.34 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 4.52 Total: 9.74 kcal Atomic # 7 Polarization: 0.75 SS G_CDS: -2.31 Total: -1.56 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -4.11 Total: -18.50 kcal Atomic # 14 Polarization: -0.41 SS G_CDS: 2.20 Total: 1.80 kcal Total: -25.30 -0.56 -25.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_12807986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.293 kcal (2) G-P(sol) polarization free energy of solvation -25.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds