Wall clock time and date at job start Tue Mar 9 2021 13:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99564 * 2 1 4 4 C 1.53001 * 109.46861 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.90703 * 43.75270 * 4 3 2 6 6 C 1.53779 * 113.61121 * 175.00125 * 4 3 2 7 7 C 1.53781 * 87.08269 * 139.98243 * 6 4 3 8 8 H 1.08998 * 113.62060 * 219.93361 * 7 6 4 9 9 N 1.46502 * 113.61498 * 89.11215 * 7 6 4 10 10 C 1.34769 * 120.00191 * 155.00107 * 9 7 6 11 11 O 1.21555 * 120.00072 * 0.02562 * 10 9 7 12 12 C 1.47844 * 120.00424 * 180.02562 * 10 9 7 13 13 C 1.39522 * 120.55614 * 0.02562 * 12 10 9 14 14 N 1.31694 * 120.56658 * 179.97438 * 13 12 10 15 15 C 1.31927 * 121.87787 * 359.71121 * 14 13 12 16 16 C 1.38350 * 121.08020 * 0.58419 * 15 14 13 17 17 C 1.50700 * 120.35119 * 179.70411 * 16 15 14 18 18 O 1.42903 * 109.46837 * 244.72593 * 17 16 15 19 19 Si 1.86300 * 109.46849 * 4.72139 * 17 16 15 20 20 C 1.38354 * 119.30267 * 359.42695 * 16 15 14 21 21 C 1.53779 * 113.61663 * 272.49635 * 4 3 2 22 22 H 1.09001 * 109.47300 * 299.99466 * 1 2 3 23 23 H 1.09002 * 109.47505 * 60.00030 * 1 2 3 24 24 H 1.09002 * 109.46790 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46894 * 60.00374 * 3 2 1 26 26 H 1.09000 * 109.47263 * 300.00253 * 3 2 1 27 27 H 1.09001 * 113.61894 * 25.43563 * 6 4 3 28 28 H 1.09002 * 113.69380 * 254.53868 * 6 4 3 29 29 H 0.97006 * 120.00135 * 335.00381 * 9 7 6 30 30 H 1.08001 * 119.71816 * 359.96256 * 13 12 10 31 31 H 1.08002 * 119.45866 * 180.31112 * 15 14 13 32 32 H 1.08997 * 109.47760 * 124.72408 * 17 16 15 33 33 H 0.96700 * 114.00022 * 60.00263 * 18 17 16 34 34 H 1.48506 * 110.00048 * 58.68772 * 19 17 16 35 35 H 1.48502 * 109.99996 * 180.02562 * 19 17 16 36 36 H 1.08003 * 120.85609 * 180.24856 * 20 16 15 37 37 H 1.09001 * 113.61222 * 105.47298 * 21 4 3 38 38 H 1.08998 * 113.61531 * 334.57381 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9013 0.4282 -0.6934 6 6 4.2602 2.5355 -0.1221 7 6 5.2670 1.9998 0.9095 8 1 5.5796 2.7440 1.6420 9 7 6.3952 1.2822 0.3107 10 6 7.5674 1.1987 0.9705 11 8 7.6884 1.7183 2.0627 12 6 8.7061 0.4751 0.3660 13 6 8.5803 -0.1252 -0.8872 14 7 9.5947 -0.7693 -1.4261 15 6 10.7600 -0.8693 -0.8158 16 6 10.9634 -0.3069 0.4318 17 6 12.2993 -0.4367 1.1170 18 8 12.1504 -1.2120 2.3081 19 14 13.5042 -1.2803 -0.0264 20 6 9.9292 0.3810 1.0413 21 6 4.1441 1.0752 1.4086 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6885 1.8464 0.8901 26 1 1.6884 1.8465 -0.8900 27 1 3.6734 3.3803 0.2385 28 1 4.6951 2.7114 -1.1060 29 1 6.2986 0.8673 -0.5608 30 1 7.6430 -0.0612 -1.4198 31 1 11.5671 -1.4026 -1.2960 32 1 12.6743 0.5543 1.3730 33 1 11.8197 -2.1078 2.1556 34 1 13.6438 -0.5003 -1.2824 35 1 14.8256 -1.4150 0.6378 36 1 10.0616 0.8332 2.0130 37 1 4.4848 0.0708 1.6600 38 1 3.5255 1.5208 2.1876 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_13287814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:41 Heat of formation + Delta-G solvation = -45.879869 kcal Electronic energy + Delta-G solvation = -21170.627060 eV Core-core repulsion = 17787.874644 eV Total energy + Delta-G solvation = -3382.752415 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03108 -40.99564 -39.61032 -38.21838 -37.93743 -34.83215 -33.79428 -32.89569 -29.70205 -27.30710 -27.06316 -26.67879 -25.81729 -23.90972 -23.44131 -21.91186 -20.36844 -19.31427 -18.15337 -17.92111 -17.69776 -17.37886 -16.98169 -16.70659 -16.50063 -16.35280 -16.01786 -15.83840 -15.38691 -14.80482 -14.65503 -14.41308 -14.24315 -14.22131 -13.74696 -13.50854 -13.45318 -12.84535 -12.73401 -12.38636 -12.19032 -11.84360 -11.59906 -11.48437 -11.29989 -11.10921 -10.62390 -10.59522 -10.58216 -10.37553 -10.13270 -5.02646 -0.60501 -0.05943 1.22109 1.59560 1.62539 1.86375 1.97444 2.59716 2.80253 3.08001 3.35896 3.43850 3.45071 3.60256 3.63766 3.69894 3.71250 3.82257 3.96243 4.08113 4.23650 4.35286 4.39887 4.45589 4.48074 4.60438 4.62829 4.67674 4.75461 4.79599 4.81746 4.85764 4.91828 5.00998 5.08379 5.13574 5.29850 5.52051 6.24224 6.31268 6.61769 6.69879 6.98871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.065 3.935 4 C -0.105 4.105 5 H 0.101 0.899 6 C -0.121 4.121 7 C 0.112 3.888 8 H 0.089 0.911 9 N -0.691 5.691 10 C 0.567 3.433 11 O -0.574 6.574 12 C -0.197 4.197 13 C 0.148 3.852 14 N -0.492 5.492 15 C 0.132 3.868 16 C -0.176 4.176 17 C -0.074 4.074 18 O -0.554 6.554 19 Si 0.785 3.215 20 C -0.003 4.003 21 C -0.145 4.145 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.415 0.585 30 H 0.191 0.809 31 H 0.187 0.813 32 H 0.111 0.889 33 H 0.397 0.603 34 H -0.276 1.276 35 H -0.295 1.295 36 H 0.136 0.864 37 H 0.060 0.940 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 -1.698 -4.847 6.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.012 4.012 4 C -0.123 4.123 5 H 0.119 0.881 6 C -0.159 4.159 7 C 0.006 3.994 8 H 0.107 0.893 9 N -0.343 5.343 10 C 0.354 3.646 11 O -0.454 6.454 12 C -0.202 4.202 13 C -0.011 4.011 14 N -0.200 5.200 15 C -0.024 4.024 16 C -0.179 4.179 17 C -0.184 4.184 18 O -0.362 6.362 19 Si 0.689 3.311 20 C -0.029 4.029 21 C -0.183 4.183 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.254 0.746 30 H 0.207 0.793 31 H 0.203 0.797 32 H 0.128 0.872 33 H 0.247 0.753 34 H -0.203 1.203 35 H -0.223 1.223 36 H 0.153 0.847 37 H 0.079 0.921 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.131 -1.271 -5.066 5.641 hybrid contribution -0.430 1.090 1.082 1.595 sum -2.561 -0.181 -3.985 4.740 Atomic orbital electron populations 1.22877 0.79941 1.03522 1.00722 1.87852 1.20997 1.29204 1.95586 1.22684 0.93136 0.84305 1.01027 1.22586 0.93040 0.98923 0.97749 0.88061 1.23289 0.95682 0.96952 0.99987 1.21912 0.85206 0.94966 0.97285 0.89253 1.45450 1.10569 1.55580 1.22692 1.18224 0.82932 0.79101 0.84338 1.90797 1.83811 1.48667 1.22126 1.20972 0.95477 1.05216 0.98555 1.23432 0.98398 0.89048 0.90199 1.67810 1.00425 1.16411 1.35344 1.23244 0.95072 0.93536 0.90522 1.21456 0.98072 1.01171 0.97167 1.25263 0.98199 1.00849 0.94089 1.86513 1.88968 1.30543 1.30213 0.93755 0.75705 0.87036 0.74627 1.21654 0.90703 0.91711 0.98839 1.23493 0.97150 1.00135 0.97562 0.93480 0.93142 0.89151 0.92571 0.92029 0.87159 0.88831 0.74603 0.79256 0.79679 0.87179 0.75286 1.20281 1.22254 0.84655 0.92149 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 11.01 113.37 1.25 1.20 16 2 O -0.42 -1.17 10.70 -148.98 -1.59 -2.77 16 3 C 0.06 -0.15 5.78 71.98 0.42 0.27 16 4 C -0.10 0.41 3.89 -10.27 -0.04 0.37 16 5 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 6 C -0.12 0.78 7.39 31.12 0.23 1.01 16 7 C 0.11 -0.13 4.32 45.52 0.20 0.07 16 8 H 0.09 0.27 7.46 -2.39 -0.02 0.26 16 9 N -0.69 1.11 5.22 -442.92 -2.31 -1.20 16 10 C 0.57 2.91 7.78 86.79 0.68 3.58 16 11 O -0.57 -8.03 16.02 -3.89 -0.06 -8.09 16 12 C -0.20 -0.44 5.89 -19.99 -0.12 -0.55 16 13 C 0.15 -0.27 10.71 85.02 0.91 0.64 16 14 N -0.49 -0.10 10.35 -194.75 -2.01 -2.12 16 15 C 0.13 -0.27 9.84 84.71 0.83 0.57 16 16 C -0.18 0.07 5.35 -19.81 -0.11 -0.03 16 17 C -0.07 0.12 2.82 71.24 0.20 0.32 16 18 O -0.55 0.06 12.84 -148.98 -1.91 -1.85 16 19 Si 0.78 -3.64 29.83 68.60 2.05 -1.59 16 20 C 0.00 -0.01 9.38 22.73 0.21 0.20 16 21 C -0.14 0.13 7.43 31.12 0.23 0.36 16 22 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 23 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 24 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 25 H 0.06 -0.19 7.84 -2.39 -0.02 -0.21 16 26 H 0.06 -0.28 8.14 -2.39 -0.02 -0.29 16 27 H 0.11 -0.89 8.10 -2.39 -0.02 -0.91 16 28 H 0.09 -0.82 8.14 -2.39 -0.02 -0.83 16 29 H 0.42 -3.26 6.77 -92.70 -0.63 -3.89 16 30 H 0.19 -1.72 6.42 -2.91 -0.02 -1.73 16 31 H 0.19 -1.42 4.91 -2.91 -0.01 -1.43 16 32 H 0.11 -0.02 7.96 -2.39 -0.02 -0.04 16 33 H 0.40 -3.40 8.70 -74.06 -0.64 -4.05 16 34 H -0.28 0.16 7.11 99.48 0.71 0.87 16 35 H -0.29 -0.95 7.11 99.48 0.71 -0.24 16 36 H 0.14 0.88 7.74 -2.91 -0.02 0.86 16 37 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.09 -0.12 7.89 -2.39 -0.02 -0.14 16 Total: 0.00 -21.29 321.55 -1.10 -22.39 By element: Atomic # 1 Polarization: -12.64 SS G_CDS: -0.14 Total: -12.79 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 4.89 Total: 8.00 kcal Atomic # 7 Polarization: 1.01 SS G_CDS: -4.33 Total: -3.31 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -3.57 Total: -12.70 kcal Atomic # 14 Polarization: -3.64 SS G_CDS: 2.05 Total: -1.59 kcal Total: -21.29 -1.10 -22.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_13287814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.491 kcal (2) G-P(sol) polarization free energy of solvation -21.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds