Wall clock time and date at job start Tue Mar 9 2021 13:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00150 * 2 1 4 4 C 1.52999 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.09004 * 112.84818 * 316.19648 * 4 3 2 6 6 C 1.54054 * 113.61823 * 87.50182 * 4 3 2 7 7 C 1.53779 * 86.98337 * 139.97966 * 6 4 3 8 8 H 1.08996 * 113.61359 * 219.98173 * 7 6 4 9 9 N 1.46503 * 113.61478 * 89.16240 * 7 6 4 10 10 C 1.34776 * 120.00116 * 105.86464 * 9 7 6 11 11 O 1.21283 * 119.99831 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00064 * 179.97438 * 10 9 7 13 13 O 1.42899 * 109.47226 * 179.97438 * 12 10 9 14 14 C 1.35981 * 117.00037 * 180.02562 * 13 12 10 15 15 C 1.38675 * 119.99927 * 179.97438 * 14 13 12 16 16 C 1.50701 * 120.00080 * 0.03953 * 15 14 13 17 17 O 1.42901 * 109.47053 * 285.00416 * 16 15 14 18 18 Si 1.86302 * 109.47217 * 165.00267 * 16 15 14 19 19 C 1.38157 * 119.99825 * 180.02562 * 15 14 13 20 20 C 1.38673 * 120.00322 * 359.97438 * 19 15 14 21 21 O 1.35981 * 120.00220 * 180.02562 * 20 19 15 22 22 C 1.42901 * 116.99673 * 179.97438 * 21 20 19 23 23 C 1.38728 * 119.99649 * 359.74525 * 20 19 15 24 24 C 1.38108 * 119.99946 * 0.51318 * 23 20 19 25 25 C 1.53780 * 113.61252 * 184.99793 * 4 3 2 26 26 H 1.08998 * 109.47441 * 300.00469 * 1 2 3 27 27 H 1.09001 * 109.47169 * 60.00351 * 1 2 3 28 28 H 1.09004 * 109.47597 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46932 * 59.99535 * 3 2 1 30 30 H 1.08998 * 109.46739 * 299.99568 * 3 2 1 31 31 H 1.08991 * 113.61043 * 25.47526 * 6 4 3 32 32 H 1.08998 * 113.69633 * 254.49317 * 6 4 3 33 33 H 0.96998 * 119.99747 * 285.85962 * 9 7 6 34 34 H 1.09008 * 109.46883 * 59.99628 * 12 10 9 35 35 H 1.09001 * 109.47338 * 300.00128 * 12 10 9 36 36 H 1.09001 * 109.47086 * 45.00427 * 16 15 14 37 37 H 0.96699 * 114.00048 * 59.99787 * 17 16 15 38 38 H 1.48503 * 109.99706 * 299.99977 * 18 16 15 39 39 H 1.48500 * 109.99766 * 61.32024 * 18 16 15 40 40 H 1.08001 * 119.99622 * 179.97438 * 19 15 14 41 41 H 1.09004 * 109.46965 * 299.99670 * 22 21 20 42 42 H 1.08994 * 109.47111 * 60.00160 * 22 21 20 43 43 H 1.09002 * 109.46512 * 180.02562 * 22 21 20 44 44 H 1.07998 * 119.99677 * 180.27683 * 23 20 19 45 45 H 1.08002 * 120.00212 * 179.77140 * 24 23 20 46 46 H 1.09002 * 113.60953 * 105.47474 * 25 4 3 47 47 H 1.08989 * 113.69293 * 334.57558 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8998 0.4287 0.6962 6 6 4.1464 1.0744 -1.4092 7 6 5.2678 1.9991 -0.9072 8 1 5.5809 2.7431 -1.6396 9 7 6.3955 1.2818 -0.3072 10 6 7.5585 1.1715 -0.9794 11 8 7.6713 1.6658 -2.0812 12 6 8.7187 0.4342 -0.3619 13 8 9.8288 0.4539 -1.2616 14 6 10.9647 -0.1728 -0.8543 15 6 12.0796 -0.1921 -1.6787 16 6 12.0326 0.4821 -3.0256 17 8 11.2692 -0.3168 -3.9318 18 14 13.7650 0.6812 -3.6813 19 6 13.2336 -0.8293 -1.2650 20 6 13.2773 -1.4490 -0.0252 21 8 14.4132 -2.0756 0.3821 22 6 14.3874 -2.6923 1.6709 23 6 12.1638 -1.4246 0.8019 24 6 11.0085 -0.7923 0.3862 25 6 4.2602 2.5354 0.1235 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.5289 1.5204 -2.1887 32 1 4.4883 0.0705 -1.6612 33 1 6.3052 0.8863 0.5739 34 1 8.4295 -0.5982 -0.1647 35 1 9.0001 0.9176 0.5736 36 1 11.5672 1.4626 -2.9251 37 1 10.3547 -0.4622 -3.6533 38 1 14.5691 1.5103 -2.7479 39 1 14.3992 -0.6505 -3.8531 40 1 14.1018 -0.8447 -1.9073 41 1 14.1804 -1.9383 2.4304 42 1 13.6084 -3.4543 1.6936 43 1 15.3540 -3.1543 1.8720 44 1 12.1992 -1.9033 1.7693 45 1 10.1404 -0.7764 1.0286 46 1 4.6940 2.7101 1.1081 47 1 3.6748 3.3810 -0.2374 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_4974302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:05 Heat of formation + Delta-G solvation = -125.625091 kcal Electronic energy + Delta-G solvation = -29042.897185 eV Core-core repulsion = 24773.673046 eV Total energy + Delta-G solvation = -4269.224139 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.95515 -41.33921 -40.29783 -39.53121 -38.33231 -38.02230 -37.00246 -34.59585 -32.93314 -31.23885 -30.14607 -28.98927 -28.06754 -26.94207 -26.64878 -26.59124 -24.21403 -23.36353 -22.51147 -21.96375 -20.34054 -19.62125 -18.91362 -18.56372 -18.12806 -17.62598 -17.53638 -17.35350 -17.01586 -16.78140 -16.74202 -16.33282 -16.12785 -15.81180 -15.68673 -15.58229 -15.29850 -14.97961 -14.65416 -14.26791 -14.16790 -13.98921 -13.77249 -13.62259 -13.50149 -13.44401 -13.12150 -12.84711 -12.59410 -12.39566 -12.36242 -12.23191 -11.82911 -11.59866 -11.55710 -11.30953 -11.29285 -11.13276 -11.02897 -10.59863 -10.25501 -10.16520 -8.95191 -4.87287 -0.08491 0.19749 1.31185 1.38059 1.40262 1.58572 1.89251 2.21287 2.40949 2.50790 2.79163 3.39567 3.45135 3.46754 3.59664 3.61062 3.79873 3.82494 3.89855 3.96732 3.97430 4.02312 4.05800 4.10975 4.26209 4.32493 4.32765 4.34712 4.39233 4.46967 4.55206 4.59502 4.62262 4.66867 4.70273 4.75772 4.82097 4.84639 4.86411 4.99298 5.01141 5.06065 5.08443 5.15680 5.27773 5.53974 6.04210 6.22808 6.29044 6.41535 6.52635 7.09127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.064 3.936 4 C -0.104 4.104 5 H 0.102 0.898 6 C -0.146 4.146 7 C 0.115 3.885 8 H 0.085 0.915 9 N -0.693 5.693 10 C 0.516 3.484 11 O -0.566 6.566 12 C 0.037 3.963 13 O -0.310 6.310 14 C 0.097 3.903 15 C -0.118 4.118 16 C -0.086 4.086 17 O -0.545 6.545 18 Si 0.812 3.188 19 C -0.142 4.142 20 C 0.088 3.912 21 O -0.342 6.342 22 C 0.017 3.983 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.120 4.120 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.420 0.580 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.372 0.628 38 H -0.266 1.266 39 H -0.287 1.287 40 H 0.124 0.876 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.166 0.834 45 H 0.175 0.825 46 H 0.095 0.905 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.069 0.634 8.468 9.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.012 4.012 4 C -0.122 4.122 5 H 0.120 0.880 6 C -0.185 4.185 7 C 0.010 3.990 8 H 0.104 0.896 9 N -0.347 5.347 10 C 0.302 3.698 11 O -0.444 6.444 12 C -0.041 4.041 13 O -0.223 6.223 14 C 0.052 3.948 15 C -0.120 4.120 16 C -0.193 4.193 17 O -0.351 6.351 18 Si 0.714 3.286 19 C -0.160 4.160 20 C 0.043 3.957 21 O -0.256 6.256 22 C -0.077 4.077 23 C -0.177 4.177 24 C -0.173 4.173 25 C -0.158 4.158 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.258 0.742 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.220 0.780 38 H -0.192 1.192 39 H -0.214 1.214 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.133 0.867 44 H 0.183 0.817 45 H 0.192 0.808 46 H 0.113 0.887 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.355 0.769 7.239 8.015 hybrid contribution -1.479 -0.685 1.753 2.394 sum -4.834 0.083 8.992 10.209 Atomic orbital electron populations 1.22876 0.79936 1.03525 1.00731 1.87846 1.21008 1.29255 1.95587 1.22696 0.93310 0.84272 1.00970 1.22633 0.92866 0.98985 0.97714 0.87956 1.23538 0.97332 1.00169 0.97462 1.21836 0.85266 0.94808 0.97123 0.89642 1.45352 1.10905 1.56657 1.21812 1.20471 0.84132 0.79822 0.85336 1.90774 1.83304 1.48512 1.21770 1.22741 0.84153 1.03592 0.93634 1.86089 1.19660 1.72158 1.44404 1.18694 0.86204 0.95982 0.93913 1.19559 0.92131 1.02320 0.97945 1.25393 1.10303 0.95171 0.88457 1.86652 1.27618 1.73277 1.47522 0.92494 0.68982 0.79890 0.87279 1.20156 0.98107 1.01609 0.96158 1.18989 0.87233 0.95558 0.93901 1.86080 1.33504 1.68179 1.37839 1.23390 1.05418 0.97696 0.81215 1.21436 0.91983 1.02962 1.01340 1.21468 1.00525 0.99988 0.95307 1.23266 0.95683 0.96811 1.00044 0.93125 0.93498 0.89148 0.92048 0.92693 0.89059 0.92159 0.74202 0.85759 0.85619 0.90329 0.77993 1.19197 1.21412 0.85835 0.91116 0.91234 0.86735 0.81679 0.80823 0.88677 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 11.01 113.37 1.25 1.19 16 2 O -0.42 -0.98 10.70 -148.98 -1.59 -2.57 16 3 C 0.06 -0.18 5.78 71.98 0.42 0.23 16 4 C -0.10 0.51 3.90 -10.17 -0.04 0.47 16 5 H 0.10 -0.57 8.14 -2.38 -0.02 -0.59 16 6 C -0.15 0.25 7.45 31.21 0.23 0.48 16 7 C 0.12 -0.30 4.29 45.52 0.20 -0.11 16 8 H 0.09 0.19 7.50 -2.39 -0.02 0.17 16 9 N -0.69 3.40 5.26 -440.03 -2.32 1.09 16 10 C 0.52 0.72 7.91 87.66 0.69 1.41 16 11 O -0.57 -7.14 16.12 16.00 0.26 -6.88 16 12 C 0.04 -0.16 5.22 71.24 0.37 0.21 16 13 O -0.31 -1.35 8.56 -74.30 -0.64 -1.99 16 14 C 0.10 0.45 6.62 22.49 0.15 0.60 16 15 C -0.12 -1.05 5.28 -19.78 -0.10 -1.15 16 16 C -0.09 -0.73 2.33 71.24 0.17 -0.56 16 17 O -0.54 -5.61 12.65 -148.98 -1.89 -7.50 16 18 Si 0.81 4.79 30.40 68.60 2.09 6.88 16 19 C -0.14 -1.43 8.59 22.35 0.19 -1.24 16 20 C 0.09 0.60 6.69 22.49 0.15 0.75 16 21 O -0.34 -2.24 10.50 -93.34 -0.98 -3.22 16 22 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 23 C -0.16 -0.05 9.03 22.36 0.20 0.16 16 24 C -0.15 0.19 9.03 22.35 0.20 0.39 16 25 C -0.12 0.92 7.38 31.12 0.23 1.15 16 26 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.05 -0.20 7.85 -2.39 -0.02 -0.22 16 31 H 0.09 -0.13 7.90 -2.39 -0.02 -0.15 16 32 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.42 -5.06 8.70 -92.71 -0.81 -5.87 16 34 H 0.12 -1.30 7.66 -2.38 -0.02 -1.32 16 35 H 0.13 -1.36 7.66 -2.39 -0.02 -1.38 16 36 H 0.08 0.63 7.82 -2.39 -0.02 0.61 16 37 H 0.37 2.88 8.59 -74.06 -0.64 2.24 16 38 H -0.27 -2.21 7.11 99.48 0.71 -1.50 16 39 H -0.29 -3.29 6.81 99.48 0.68 -2.61 16 40 H 0.12 1.43 4.94 -2.91 -0.01 1.42 16 41 H 0.07 -0.44 7.65 -2.39 -0.02 -0.45 16 42 H 0.07 -0.41 7.67 -2.39 -0.02 -0.43 16 43 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H 0.17 -1.02 6.29 -2.91 -0.02 -1.04 16 45 H 0.17 -1.71 6.29 -2.91 -0.02 -1.72 16 46 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 47 H 0.11 -0.95 8.10 -2.39 -0.02 -0.97 16 Total: 0.00 -25.57 388.20 -0.08 -25.65 By element: Atomic # 1 Polarization: -16.08 SS G_CDS: -0.43 Total: -16.51 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.42 Total: 5.05 kcal Atomic # 7 Polarization: 3.40 SS G_CDS: -2.32 Total: 1.09 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -4.84 Total: -22.16 kcal Atomic # 14 Polarization: 4.79 SS G_CDS: 2.09 Total: 6.88 kcal Total: -25.57 -0.08 -25.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_4974302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.971 kcal (2) G-P(sol) polarization free energy of solvation -25.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds