Wall clock time and date at job start Tue Mar 9 2021 13:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 114.00289 * 2 1 4 4 C 1.52995 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.85043 * 314.66319 * 4 3 2 6 6 C 1.53785 * 113.69093 * 85.93436 * 4 3 2 7 7 C 1.53779 * 87.08093 * 139.99088 * 6 4 3 8 8 H 1.08994 * 113.61314 * 220.01752 * 7 6 4 9 9 N 1.46502 * 113.69134 * 89.12362 * 7 6 4 10 10 C 1.34780 * 119.99583 * 107.46310 * 9 7 6 11 11 O 1.21280 * 120.00213 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99755 * 180.02562 * 10 9 7 13 13 O 1.42901 * 109.46854 * 180.02562 * 12 10 9 14 14 C 1.35898 * 116.99293 * 180.02562 * 13 12 10 15 15 C 1.38753 * 120.02219 * 179.72069 * 14 13 12 16 16 C 1.50701 * 119.97424 * 0.02562 * 15 14 13 17 17 O 1.42902 * 109.47610 * 285.00174 * 16 15 14 18 18 Si 1.86301 * 109.47290 * 165.00050 * 16 15 14 19 19 C 1.38198 * 120.05726 * 179.76679 * 15 14 13 20 20 C 1.38162 * 120.10487 * 0.50647 * 19 15 14 21 21 C 1.38792 * 120.05337 * 359.74703 * 20 19 15 22 22 O 1.35896 * 120.02502 * 179.97438 * 21 20 19 23 23 C 1.42898 * 117.00289 * 0.02562 * 22 21 20 24 24 C 1.38609 * 119.94684 * 359.97438 * 21 20 19 25 25 C 1.53781 * 113.61293 * 183.47060 * 4 3 2 26 26 H 1.09000 * 109.46903 * 300.00053 * 1 2 3 27 27 H 1.08998 * 109.46883 * 60.00303 * 1 2 3 28 28 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47011 * 59.99507 * 3 2 1 30 30 H 1.09004 * 109.46738 * 300.00257 * 3 2 1 31 31 H 1.09003 * 113.60734 * 254.54208 * 6 4 3 32 32 H 1.08996 * 113.61146 * 25.43706 * 6 4 3 33 33 H 0.96999 * 120.00301 * 287.47041 * 9 7 6 34 34 H 1.09002 * 109.46500 * 300.00140 * 12 10 9 35 35 H 1.08995 * 109.47044 * 60.00072 * 12 10 9 36 36 H 1.09003 * 109.47021 * 45.00017 * 16 15 14 37 37 H 0.96704 * 113.99355 * 300.00260 * 17 16 15 38 38 H 1.48498 * 110.00032 * 180.02562 * 18 16 15 39 39 H 1.48501 * 109.99906 * 301.31850 * 18 16 15 40 40 H 1.07996 * 119.95107 * 180.25814 * 19 15 14 41 41 H 1.07990 * 119.97214 * 179.72742 * 20 19 15 42 42 H 1.08997 * 109.47003 * 60.00337 * 23 22 21 43 43 H 1.08997 * 109.47138 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.46764 * 300.00552 * 23 22 21 45 45 H 1.08001 * 120.05696 * 180.02562 * 24 21 20 46 46 H 1.09005 * 113.61302 * 334.47929 * 25 4 3 47 47 H 1.08993 * 113.62030 * 105.38774 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9014 0.4474 0.7154 6 6 4.1442 1.0360 -1.4038 7 6 5.2673 1.9737 -0.9305 8 1 5.5788 2.6970 -1.6841 9 7 6.3964 1.2746 -0.3119 10 6 7.5683 1.1731 -0.9699 11 8 7.6883 1.6609 -2.0737 12 6 8.7297 0.4534 -0.3338 13 8 9.8502 0.4808 -1.2203 14 6 10.9877 -0.1294 -0.7955 15 6 12.1120 -0.1456 -1.6085 16 6 12.0714 0.5144 -2.9628 17 8 11.3257 -0.3017 -3.8683 18 14 13.8081 0.7254 -3.6031 19 6 13.2707 -0.7617 -1.1753 20 6 13.3095 -1.3720 0.0636 21 6 12.1859 -1.3631 0.8783 22 8 12.2246 -1.9641 2.0966 23 6 13.4546 -2.5853 2.4748 24 6 11.0244 -0.7408 0.4484 25 6 4.2607 2.5380 0.0860 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 4.4847 0.0249 -1.6272 32 1 3.5256 1.4599 -2.1948 33 1 6.3006 0.8847 0.5711 34 1 8.9945 0.9467 0.6014 35 1 8.4501 -0.5807 -0.1328 36 1 11.5946 1.4909 -2.8769 37 1 11.6934 -1.1874 -3.9934 38 1 13.7818 1.3758 -4.9379 39 1 14.6030 1.5460 -2.6544 40 1 14.1460 -0.7696 -1.8078 41 1 14.2147 -1.8567 0.3981 42 1 14.2487 -1.8388 2.4912 43 1 13.3493 -3.0260 3.4661 44 1 13.7040 -3.3653 1.7553 45 1 10.1492 -0.7324 1.0811 46 1 3.6739 3.3726 -0.2978 47 1 4.6952 2.7396 1.0650 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_4974312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:08 Heat of formation + Delta-G solvation = -125.865304 kcal Electronic energy + Delta-G solvation = -29068.677521 eV Core-core repulsion = 24799.442966 eV Total energy + Delta-G solvation = -4269.234555 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.89732 -41.33326 -40.23258 -39.53408 -38.39903 -38.09994 -36.92086 -34.64377 -32.29321 -31.48573 -30.20502 -28.98338 -28.33560 -26.96611 -26.61200 -26.11600 -24.11792 -23.31830 -22.50384 -21.96324 -20.37776 -19.92794 -18.64663 -18.10810 -17.86412 -17.58158 -17.40285 -17.18972 -16.99554 -16.74807 -16.67152 -16.50856 -16.30894 -15.96178 -15.70610 -15.45002 -15.14760 -14.96405 -14.57788 -14.46328 -14.29003 -13.90234 -13.76462 -13.51324 -13.45785 -13.32723 -13.16194 -12.87725 -12.49724 -12.40336 -12.26630 -12.02175 -11.87263 -11.84407 -11.63296 -11.61966 -11.32682 -11.10442 -10.61033 -10.35870 -10.21339 -9.70834 -9.10666 -5.03718 0.20273 0.29554 1.31529 1.34099 1.38437 1.64577 1.98531 2.24428 2.52706 2.57364 2.77350 3.42249 3.46206 3.57716 3.60100 3.73106 3.77566 3.82809 3.90438 3.94215 4.00121 4.08046 4.15949 4.32572 4.34174 4.37483 4.39303 4.43915 4.45804 4.46363 4.57827 4.60275 4.60799 4.66960 4.72402 4.79165 4.80032 4.83740 4.98099 5.01773 5.05936 5.12394 5.23101 5.27385 5.46442 5.51310 6.10627 6.21862 6.34007 6.39772 6.85959 7.04335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.065 3.935 4 C -0.103 4.103 5 H 0.102 0.898 6 C -0.146 4.146 7 C 0.112 3.888 8 H 0.084 0.916 9 N -0.692 5.692 10 C 0.516 3.484 11 O -0.568 6.568 12 C 0.036 3.964 13 O -0.305 6.305 14 C 0.172 3.828 15 C -0.203 4.203 16 C -0.070 4.070 17 O -0.558 6.558 18 Si 0.796 3.204 19 C -0.031 4.031 20 C -0.237 4.237 21 C 0.163 3.837 22 O -0.331 6.331 23 C 0.016 3.984 24 C -0.254 4.254 25 C -0.119 4.119 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.420 0.580 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.391 0.609 38 H -0.304 1.304 39 H -0.279 1.279 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.068 0.932 43 H 0.115 0.885 44 H 0.071 0.929 45 H 0.151 0.849 46 H 0.109 0.891 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -3.858 7.246 8.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.011 4.011 4 C -0.121 4.121 5 H 0.120 0.880 6 C -0.185 4.185 7 C 0.007 3.993 8 H 0.102 0.898 9 N -0.346 5.346 10 C 0.302 3.698 11 O -0.446 6.446 12 C -0.042 4.042 13 O -0.218 6.218 14 C 0.126 3.874 15 C -0.204 4.204 16 C -0.178 4.178 17 O -0.366 6.366 18 Si 0.701 3.299 19 C -0.048 4.048 20 C -0.255 4.255 21 C 0.117 3.883 22 O -0.244 6.244 23 C -0.078 4.078 24 C -0.273 4.273 25 C -0.157 4.157 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.258 0.742 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.240 0.760 38 H -0.233 1.233 39 H -0.206 1.206 40 H 0.184 0.816 41 H 0.179 0.821 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.169 0.831 46 H 0.127 0.873 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.447 -2.508 6.160 6.807 hybrid contribution -1.024 0.331 0.616 1.240 sum 0.423 -2.177 6.776 7.130 Atomic orbital electron populations 1.22882 0.79891 1.03550 1.00743 1.87850 1.21049 1.29192 1.95590 1.22675 0.93116 0.84318 1.01028 1.22572 0.93042 0.98825 0.97680 0.87998 1.23488 0.97217 1.00031 0.97722 1.21869 0.85246 0.95050 0.97145 0.89809 1.45343 1.10188 1.57447 1.21642 1.20488 0.84295 0.79615 0.85385 1.90774 1.83607 1.48455 1.21740 1.22714 0.84261 1.03529 0.93674 1.86220 1.19254 1.72229 1.44053 1.18637 0.85825 0.91153 0.91774 1.19752 0.93446 1.08784 0.98424 1.25161 1.09379 0.95151 0.88099 1.86546 1.56053 1.30048 1.63910 0.94109 0.72909 0.87154 0.75748 1.20869 0.95808 0.92739 0.95427 1.21453 0.99514 1.08323 0.96234 1.18873 0.93626 0.90904 0.84875 1.86055 1.38974 1.68230 1.31159 1.23412 0.84050 0.97680 1.02690 1.20543 1.00320 1.08888 0.97584 1.23273 0.95594 0.96775 1.00076 0.93093 0.93484 0.89112 0.91952 0.92639 0.92224 0.88941 0.74189 0.85919 0.86136 0.90242 0.76017 1.23255 1.20589 0.81590 0.82053 0.91295 0.86650 0.91030 0.83107 0.87284 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.55 10.70 -148.98 -1.59 -3.15 16 3 C 0.06 -0.09 5.77 71.98 0.42 0.33 16 4 C -0.10 0.28 3.89 -10.27 -0.04 0.24 16 5 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 6 C -0.15 -0.13 7.44 31.12 0.23 0.10 16 7 C 0.11 0.07 4.32 45.52 0.20 0.27 16 8 H 0.08 0.48 7.46 -2.39 -0.02 0.47 16 9 N -0.69 0.53 5.27 -440.02 -2.32 -1.79 16 10 C 0.52 3.44 7.91 87.66 0.69 4.13 16 11 O -0.57 -10.49 16.10 16.01 0.26 -10.23 16 12 C 0.04 0.05 5.22 71.24 0.37 0.43 16 13 O -0.31 -3.11 8.99 -73.37 -0.66 -3.77 16 14 C 0.17 1.17 6.66 22.49 0.15 1.32 16 15 C -0.20 -1.00 5.28 -19.75 -0.10 -1.11 16 16 C -0.07 -0.48 2.37 71.24 0.17 -0.31 16 17 O -0.56 -4.82 12.88 -148.98 -1.92 -6.74 16 18 Si 0.80 0.86 29.91 68.60 2.05 2.91 16 19 C -0.03 0.03 8.65 22.24 0.19 0.22 16 20 C -0.24 0.36 9.04 22.38 0.20 0.56 16 21 C 0.16 0.31 6.68 22.49 0.15 0.46 16 22 O -0.33 -0.30 10.49 -92.38 -0.97 -1.27 16 23 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 24 C -0.25 -0.78 8.97 22.46 0.20 -0.58 16 25 C -0.12 0.62 7.39 31.12 0.23 0.85 16 26 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.06 -0.23 8.14 -2.38 -0.02 -0.25 16 30 H 0.06 -0.12 7.88 -2.39 -0.02 -0.14 16 31 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.09 0.08 7.92 -2.39 -0.02 0.06 16 33 H 0.42 -3.35 8.70 -92.71 -0.81 -4.16 16 34 H 0.12 -0.57 7.66 -2.39 -0.02 -0.59 16 35 H 0.12 -0.47 7.66 -2.39 -0.02 -0.49 16 36 H 0.08 1.02 7.82 -2.39 -0.02 1.00 16 37 H 0.39 -0.57 8.70 -74.05 -0.64 -1.21 16 38 H -0.30 -2.80 7.11 99.48 0.71 -2.10 16 39 H -0.28 -1.29 7.11 99.48 0.71 -0.58 16 40 H 0.17 -1.26 5.11 -2.91 -0.01 -1.28 16 41 H 0.16 -1.18 6.29 -2.92 -0.02 -1.20 16 42 H 0.07 -0.58 7.66 -2.39 -0.02 -0.60 16 43 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16 44 H 0.07 -0.63 7.66 -2.39 -0.02 -0.65 16 45 H 0.15 -0.16 6.30 -2.91 -0.02 -0.18 16 46 H 0.11 -0.73 8.10 -2.38 -0.02 -0.75 16 47 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 Total: 0.00 -29.95 389.02 -0.14 -30.09 By element: Atomic # 1 Polarization: -14.79 SS G_CDS: -0.41 Total: -15.20 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.42 Total: 9.14 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: -2.32 Total: -1.79 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -4.89 Total: -25.16 kcal Atomic # 14 Polarization: 0.86 SS G_CDS: 2.05 Total: 2.91 kcal Total: -29.95 -0.14 -30.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_4974312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.775 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds