Wall clock time and date at job start Tue Mar 9 2021 13:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00040 * 2 1 4 4 C 1.52997 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.85118 * 43.80275 * 4 3 2 6 6 C 1.53774 * 113.61607 * 175.00539 * 4 3 2 7 7 C 1.53777 * 87.08414 * 140.06412 * 6 4 3 8 8 H 1.09008 * 113.61609 * 219.93363 * 7 6 4 9 9 N 1.46497 * 113.61556 * 89.11803 * 7 6 4 10 10 C 1.34775 * 120.00350 * 155.00180 * 9 7 6 11 11 O 1.21282 * 120.00144 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99953 * 179.97438 * 10 9 7 13 13 O 1.42902 * 109.46663 * 180.02562 * 12 10 9 14 14 C 1.35995 * 116.99488 * 179.97438 * 13 12 10 15 15 C 1.39155 * 120.07324 * 180.02562 * 14 13 12 16 16 O 1.35997 * 120.07035 * 359.97438 * 15 14 13 17 17 C 1.42900 * 117.00002 * 179.97438 * 16 15 14 18 18 C 1.38562 * 119.85546 * 179.70187 * 15 14 13 19 19 C 1.38240 * 119.99781 * 0.53093 * 18 15 14 20 20 C 1.50705 * 119.92432 * 179.76388 * 19 18 15 21 21 O 1.42894 * 109.47171 * 299.72668 * 20 19 18 22 22 Si 1.86298 * 109.46780 * 179.72109 * 20 19 18 23 23 C 1.38246 * 120.14724 * 359.49353 * 19 18 15 24 24 C 1.38241 * 120.14673 * 0.22727 * 23 19 18 25 25 C 1.53773 * 87.08034 * 334.56723 * 7 6 4 26 26 H 1.09002 * 109.46845 * 299.99592 * 1 2 3 27 27 H 1.09004 * 109.47229 * 59.99482 * 1 2 3 28 28 H 1.09004 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46687 * 60.00570 * 3 2 1 30 30 H 1.08999 * 109.47324 * 300.00518 * 3 2 1 31 31 H 1.09002 * 113.61920 * 25.51347 * 6 4 3 32 32 H 1.09001 * 113.61680 * 254.61170 * 6 4 3 33 33 H 0.97000 * 119.99716 * 334.99665 * 9 7 6 34 34 H 1.09001 * 109.47063 * 59.99887 * 12 10 9 35 35 H 1.09002 * 109.47068 * 299.99493 * 12 10 9 36 36 H 1.08995 * 109.47068 * 60.00458 * 17 16 15 37 37 H 1.09006 * 109.46875 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47067 * 299.99987 * 17 16 15 39 39 H 1.07999 * 120.00074 * 180.27389 * 18 15 14 40 40 H 1.09004 * 109.46779 * 59.72992 * 20 19 18 41 41 H 0.96709 * 113.99337 * 180.02562 * 21 20 19 42 42 H 1.48506 * 109.99834 * 60.00830 * 22 20 19 43 43 H 1.48502 * 110.00011 * 181.32094 * 22 20 19 44 44 H 1.08003 * 119.92885 * 180.25568 * 23 19 18 45 45 H 1.08003 * 119.99935 * 180.02562 * 24 23 19 46 46 H 1.09005 * 113.61723 * 139.98263 * 25 7 6 47 47 H 1.09002 * 113.61468 * 270.88140 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8999 0.4286 -0.6962 6 6 4.2604 2.5352 -0.1234 7 6 5.2692 1.9982 0.9056 8 1 5.5834 2.7417 1.6382 9 7 6.3960 1.2812 0.3036 10 6 7.5695 1.1967 0.9610 11 8 7.6929 1.7146 2.0507 12 6 8.7285 0.4586 0.3420 13 8 9.8510 0.5082 1.2249 14 6 10.9877 -0.1152 0.8140 15 6 12.1192 -0.1071 1.6240 16 8 12.0909 0.5246 2.8280 17 6 13.2889 0.4916 3.6063 18 6 13.2730 -0.7489 1.2036 19 6 13.3017 -1.3860 -0.0230 20 6 14.5592 -2.0790 -0.4809 21 8 15.6232 -1.1289 -0.5648 22 14 14.2732 -2.8409 -2.1567 23 6 12.1778 -1.3936 -0.8279 24 6 11.0216 -0.7601 -0.4119 25 6 4.1471 1.0734 1.4059 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6887 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.6745 3.3798 0.2393 32 1 4.6929 2.7107 -1.1084 33 1 6.2975 0.8672 -0.5680 34 1 8.9914 0.9255 -0.6072 35 1 8.4475 -0.5805 0.1702 36 1 14.0981 0.9620 3.0478 37 1 13.1303 1.0307 4.5403 38 1 13.5518 -0.5434 3.8247 39 1 14.1511 -0.7479 1.8322 40 1 14.8243 -2.8594 0.2325 41 1 16.4652 -1.5060 -0.8546 42 1 13.9110 -1.7872 -3.1385 43 1 15.4957 -3.5545 -2.6056 44 1 12.2029 -1.8959 -1.7837 45 1 10.1448 -0.7678 -1.0425 46 1 4.4881 0.0686 1.6556 47 1 3.5302 1.5182 2.1867 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535612_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:15 Heat of formation + Delta-G solvation = -118.475586 kcal Electronic energy + Delta-G solvation = -28713.546275 eV Core-core repulsion = 24444.632162 eV Total energy + Delta-G solvation = -4268.914113 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76097 -41.26186 -39.96143 -39.03780 -38.74184 -38.14040 -37.07469 -34.49199 -32.10861 -31.41320 -30.27394 -29.05418 -28.36664 -27.00221 -26.67963 -26.11956 -23.93873 -23.30218 -22.42417 -21.77665 -20.36060 -19.64496 -18.64299 -18.31597 -18.11919 -17.54913 -17.46121 -17.33914 -17.00941 -16.76876 -16.51150 -16.33146 -16.04620 -15.84364 -15.73079 -15.46545 -15.33804 -14.83965 -14.41426 -14.24182 -14.00553 -13.98511 -13.85655 -13.56468 -13.45016 -13.43560 -12.90437 -12.76777 -12.52676 -12.43402 -12.19239 -12.11784 -11.91689 -11.88549 -11.67809 -11.62753 -11.35104 -10.83981 -10.62679 -10.53500 -10.11397 -9.70661 -8.78539 -4.98949 0.24210 0.36147 1.25423 1.46795 1.53742 1.57360 1.93332 2.37380 2.56214 2.59503 2.71272 3.29724 3.37342 3.50792 3.51285 3.70997 3.74751 3.82042 3.86967 3.88735 3.97789 3.99808 4.19211 4.25130 4.27360 4.30540 4.33340 4.35581 4.36989 4.46457 4.49567 4.52178 4.61389 4.62871 4.66025 4.68849 4.74107 4.76546 4.99543 5.01145 5.04883 5.09627 5.15484 5.45486 5.50949 5.61076 6.02073 6.16864 6.36790 6.40466 6.60486 7.15240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.391 6.391 3 C 0.069 3.931 4 C -0.110 4.110 5 H 0.099 0.901 6 C -0.137 4.137 7 C 0.121 3.879 8 H 0.107 0.893 9 N -0.711 5.711 10 C 0.519 3.481 11 O -0.507 6.507 12 C 0.039 3.961 13 O -0.276 6.276 14 C 0.104 3.896 15 C 0.107 3.893 16 O -0.301 6.301 17 C 0.025 3.975 18 C -0.145 4.145 19 C -0.069 4.069 20 C -0.074 4.074 21 O -0.536 6.536 22 Si 0.683 3.317 23 C -0.111 4.111 24 C -0.169 4.169 25 C -0.143 4.143 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.403 0.597 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.139 0.861 40 H 0.077 0.923 41 H 0.380 0.620 42 H -0.254 1.254 43 H -0.262 1.262 44 H 0.133 0.867 45 H 0.140 0.860 46 H 0.075 0.925 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 -3.050 -3.901 5.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.310 6.310 3 C -0.008 4.008 4 C -0.128 4.128 5 H 0.117 0.883 6 C -0.175 4.175 7 C 0.016 3.984 8 H 0.125 0.875 9 N -0.365 5.365 10 C 0.303 3.697 11 O -0.380 6.380 12 C -0.040 4.040 13 O -0.189 6.189 14 C 0.058 3.942 15 C 0.061 3.939 16 O -0.214 6.214 17 C -0.070 4.070 18 C -0.163 4.163 19 C -0.069 4.069 20 C -0.184 4.184 21 O -0.344 6.344 22 Si 0.584 3.416 23 C -0.129 4.129 24 C -0.187 4.187 25 C -0.182 4.182 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.237 0.763 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.157 0.843 40 H 0.095 0.905 41 H 0.228 0.772 42 H -0.179 1.179 43 H -0.187 1.187 44 H 0.150 0.850 45 H 0.158 0.842 46 H 0.094 0.906 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.517 -2.234 -3.435 4.809 hybrid contribution 1.056 0.215 -0.472 1.176 sum -1.461 -2.019 -3.907 4.634 Atomic orbital electron populations 1.22765 0.80801 1.02994 1.00048 1.87888 1.19850 1.27864 1.95418 1.22560 0.92983 0.84907 1.00310 1.22615 0.93215 0.98271 0.98744 0.88296 1.23341 0.96930 0.97208 1.00051 1.21826 0.85048 0.95062 0.96473 0.87469 1.45464 1.11189 1.57184 1.22660 1.20030 0.83166 0.80660 0.85812 1.90798 1.82428 1.44926 1.19853 1.22473 0.85842 1.01824 0.93889 1.86276 1.17947 1.71319 1.43352 1.18259 0.85559 0.97200 0.93175 1.18246 0.92117 0.96736 0.86808 1.86247 1.37132 1.70865 1.27193 1.23122 0.86261 1.02152 0.95471 1.20900 0.96782 1.00649 0.98018 1.18932 0.93687 1.00044 0.94256 1.24779 0.87650 0.94702 1.11220 1.86593 1.21049 1.36825 1.89902 0.95062 0.86974 0.83946 0.75571 1.20610 0.92456 1.00424 0.99381 1.20959 1.00141 1.02152 0.95477 1.23490 0.97003 1.01099 0.96596 0.93982 0.94021 0.89479 0.92975 0.93117 0.88265 0.90271 0.76264 0.88756 0.88628 0.92540 0.87895 0.92585 0.84310 0.90540 0.77236 1.17874 1.18682 0.84985 0.84184 0.90627 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 11.01 101.05 1.11 1.09 16 2 O -0.39 -0.61 10.70 -35.23 -0.38 -0.98 16 3 C 0.07 -0.05 5.78 37.16 0.21 0.16 16 4 C -0.11 0.18 3.88 -89.81 -0.35 -0.17 16 5 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 6 C -0.14 0.36 7.39 -25.92 -0.19 0.17 16 7 C 0.12 -0.07 4.32 -67.13 -0.29 -0.36 16 8 H 0.11 0.14 7.46 -51.92 -0.39 -0.25 16 9 N -0.71 0.82 5.26 -53.02 -0.28 0.54 16 10 C 0.52 1.11 7.91 -10.98 -0.09 1.02 16 11 O -0.51 -3.75 16.10 -14.36 -0.23 -3.98 16 12 C 0.04 -0.01 5.22 36.01 0.19 0.18 16 13 O -0.28 -1.24 9.45 -47.35 -0.45 -1.69 16 14 C 0.10 0.36 6.70 -39.12 -0.26 0.10 16 15 C 0.11 0.45 6.70 -39.12 -0.26 0.19 16 16 O -0.30 -1.51 10.28 -34.23 -0.35 -1.86 16 17 C 0.03 0.02 9.81 101.05 0.99 1.01 16 18 C -0.14 -0.37 8.60 -39.46 -0.34 -0.71 16 19 C -0.07 -0.11 5.42 -104.62 -0.57 -0.68 16 20 C -0.07 0.00 2.81 36.01 0.10 0.10 16 21 O -0.54 -0.64 12.75 -35.23 -0.45 -1.08 16 22 Si 0.68 -0.77 29.78 -169.99 -5.06 -5.83 16 23 C -0.11 -0.06 8.66 -39.58 -0.34 -0.40 16 24 C -0.17 -0.09 9.04 -39.46 -0.36 -0.44 16 25 C -0.14 0.08 7.43 -25.92 -0.19 -0.11 16 26 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 27 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.05 -0.07 7.85 -51.93 -0.41 -0.47 16 30 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 31 H 0.10 -0.32 8.10 -51.93 -0.42 -0.74 16 32 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 33 H 0.40 -1.74 8.70 -40.82 -0.36 -2.09 16 34 H 0.09 -0.27 7.66 -51.93 -0.40 -0.67 16 35 H 0.10 -0.29 7.66 -51.93 -0.40 -0.69 16 36 H 0.06 0.01 7.67 -51.93 -0.40 -0.39 16 37 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 38 H 0.06 -0.03 7.65 -51.93 -0.40 -0.43 16 39 H 0.14 0.18 6.30 -52.49 -0.33 -0.15 16 40 H 0.08 -0.13 7.96 -51.93 -0.41 -0.55 16 41 H 0.38 -1.08 8.74 45.56 0.40 -0.68 16 42 H -0.25 -0.49 7.11 56.52 0.40 -0.09 16 43 H -0.26 -0.24 7.11 56.52 0.40 0.16 16 44 H 0.13 -0.24 4.87 -52.48 -0.26 -0.49 16 45 H 0.14 -0.40 6.30 -52.48 -0.33 -0.73 16 46 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 47 H 0.09 -0.07 7.90 -51.93 -0.41 -0.48 16 LS Contribution 389.20 15.07 5.87 5.87 Total: 0.00 -11.72 389.20 -9.05 -20.77 By element: Atomic # 1 Polarization: -5.81 SS G_CDS: -7.08 Total: -12.89 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.63 Total: 1.14 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -0.28 Total: 0.54 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -1.86 Total: -9.60 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -5.06 Total: -5.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -11.72 -9.05 -20.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.705 kcal (2) G-P(sol) polarization free energy of solvation -11.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds