Wall clock time and date at job start Tue Mar 9 2021 13:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00260 * 2 1 4 4 C 1.53012 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.08995 * 112.90549 * 316.24755 * 4 3 2 6 6 C 1.54047 * 113.61916 * 87.50681 * 4 3 2 7 7 C 1.53780 * 86.98482 * 139.97250 * 6 4 3 8 8 H 1.09001 * 113.61427 * 219.97329 * 7 6 4 9 9 N 1.46502 * 113.61155 * 89.16133 * 7 6 4 10 10 C 1.34782 * 120.00349 * 105.85807 * 9 7 6 11 11 O 1.21620 * 119.99539 * 0.02562 * 10 9 7 12 12 C 1.47254 * 120.00425 * 179.97438 * 10 9 7 13 13 C 1.36767 * 126.94767 * 180.02562 * 12 10 9 14 14 C 1.50703 * 125.79733 * 359.97438 * 13 12 10 15 15 N 1.34658 * 108.40157 * 180.24828 * 13 12 10 16 16 C 1.36447 * 110.29681 * 359.55531 * 15 13 12 17 17 C 1.50703 * 125.57482 * 180.16261 * 16 15 13 18 18 O 1.42906 * 109.47051 * 245.33223 * 17 16 15 19 19 Si 1.86294 * 109.46749 * 5.32958 * 17 16 15 20 20 C 1.34496 * 108.85531 * 0.44748 * 16 15 13 21 21 C 1.53777 * 87.17424 * 334.57286 * 7 6 4 22 22 H 1.08996 * 109.46412 * 300.00540 * 1 2 3 23 23 H 1.08998 * 109.46364 * 60.00190 * 1 2 3 24 24 H 1.08990 * 109.47340 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47334 * 60.00200 * 3 2 1 26 26 H 1.08997 * 109.47370 * 299.99526 * 3 2 1 27 27 H 1.09003 * 113.61245 * 25.47258 * 6 4 3 28 28 H 1.09002 * 113.69606 * 254.49386 * 6 4 3 29 29 H 0.97002 * 119.99879 * 285.86370 * 9 7 6 30 30 H 1.09002 * 109.47152 * 90.00020 * 14 13 12 31 31 H 1.09001 * 109.46980 * 330.00120 * 14 13 12 32 32 H 1.09004 * 109.47113 * 210.00101 * 14 13 12 33 33 H 0.96999 * 124.85098 * 179.70548 * 15 13 12 34 34 H 1.08995 * 109.46940 * 125.33078 * 17 16 15 35 35 H 0.96699 * 113.99894 * 59.99652 * 18 17 16 36 36 H 1.48504 * 109.99981 * 58.68451 * 19 17 16 37 37 H 1.48507 * 110.00050 * 179.97438 * 19 17 16 38 38 H 1.08000 * 126.83304 * 179.73075 * 20 16 15 39 39 H 1.08994 * 113.61837 * 140.02439 * 21 7 6 40 40 H 1.09004 * 113.60749 * 270.83511 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1844 0.0006 5 1 3.9009 0.4281 0.6952 6 6 4.1466 1.0742 -1.4092 7 6 5.2680 1.9990 -0.9071 8 1 5.5812 2.7429 -1.6396 9 7 6.3957 1.2816 -0.3071 10 6 7.5587 1.1711 -0.9793 11 8 7.6721 1.6674 -2.0839 12 6 8.6923 0.4505 -0.3761 13 6 9.9286 0.2541 -0.9271 14 6 10.3787 0.7434 -2.2796 15 7 10.6732 -0.4560 -0.0585 16 6 9.9545 -0.7280 1.0690 17 6 10.4554 -1.4986 2.2634 18 8 9.7176 -2.7161 2.3883 19 14 12.2630 -1.8883 2.0373 20 6 8.7240 -0.2013 0.9377 21 6 4.2605 2.5351 0.1235 22 1 -0.3632 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6887 1.8463 0.8900 26 1 1.6888 1.8463 -0.8900 27 1 3.5291 1.5203 -2.1888 28 1 4.4884 0.0703 -1.6612 29 1 6.3053 0.8860 0.5739 30 1 10.8163 1.7367 -2.1794 31 1 9.5225 0.7897 -2.9526 32 1 11.1228 0.0577 -2.6849 33 1 11.5902 -0.7327 -0.2115 34 1 10.3227 -0.8993 3.1641 35 1 9.7898 -3.3002 1.6210 36 1 13.0371 -0.6315 1.8743 37 1 12.7693 -2.6477 3.2088 38 1 7.9193 -0.2489 1.6565 39 1 4.6942 2.7099 1.1081 40 1 3.6751 3.3808 -0.2373 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535612_9865296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:45 Heat of formation + Delta-G solvation = -45.918291 kcal Electronic energy + Delta-G solvation = -21958.352966 eV Core-core repulsion = 18548.287406 eV Total energy + Delta-G solvation = -3410.065560 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.50209 -41.05298 -39.41996 -38.16951 -37.70736 -34.44665 -32.79989 -32.08292 -29.66789 -28.88010 -27.00912 -26.62395 -25.65558 -24.03943 -22.97899 -21.58101 -20.74859 -20.15654 -18.68033 -17.83237 -17.38259 -17.02527 -16.94880 -16.75026 -16.56049 -16.18435 -15.82031 -15.52810 -15.10402 -14.95058 -14.52336 -14.43899 -14.20409 -14.07755 -13.83545 -13.63801 -13.41878 -13.36269 -12.80204 -12.67841 -12.55123 -12.36529 -12.24283 -11.80051 -11.55629 -11.25723 -10.98768 -10.58149 -10.48095 -10.12633 -9.81680 -9.17215 -5.15249 0.68208 1.14440 1.23504 1.51542 1.84335 2.01859 2.38031 2.49561 2.80995 3.43497 3.49160 3.64071 3.70957 3.84903 3.88513 3.98807 4.08129 4.22901 4.35609 4.40860 4.44473 4.48274 4.50186 4.60697 4.63602 4.71804 4.73280 4.76556 4.77290 4.84861 4.86784 5.02702 5.04605 5.12787 5.19480 5.29892 5.64774 5.68496 5.85001 6.24741 6.42610 6.63180 6.71268 7.32839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.066 3.934 4 C -0.104 4.104 5 H 0.094 0.906 6 C -0.144 4.144 7 C 0.116 3.884 8 H 0.088 0.912 9 N -0.701 5.701 10 C 0.589 3.411 11 O -0.585 6.585 12 C -0.267 4.267 13 C 0.121 3.879 14 C -0.097 4.097 15 N -0.532 5.532 16 C -0.023 4.023 17 C -0.039 4.039 18 O -0.549 6.549 19 Si 0.768 3.232 20 C -0.140 4.140 21 C -0.122 4.122 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.410 0.590 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.428 0.572 34 H 0.123 0.877 35 H 0.396 0.604 36 H -0.278 1.278 37 H -0.290 1.290 38 H 0.154 0.846 39 H 0.087 0.913 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 -1.246 0.904 1.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.010 4.010 4 C -0.122 4.122 5 H 0.112 0.888 6 C -0.182 4.182 7 C 0.010 3.990 8 H 0.106 0.894 9 N -0.351 5.351 10 C 0.379 3.621 11 O -0.467 6.467 12 C -0.277 4.277 13 C 0.001 3.999 14 C -0.154 4.154 15 N -0.133 5.133 16 C -0.131 4.131 17 C -0.150 4.150 18 O -0.357 6.357 19 Si 0.672 3.328 20 C -0.164 4.164 21 C -0.160 4.160 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.246 0.754 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.269 0.731 34 H 0.140 0.860 35 H 0.246 0.754 36 H -0.204 1.204 37 H -0.217 1.217 38 H 0.172 0.828 39 H 0.105 0.895 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.039 -0.779 1.047 2.420 hybrid contribution -0.489 0.272 0.643 0.852 sum 1.550 -0.506 1.689 2.348 Atomic orbital electron populations 1.22880 0.79894 1.03533 1.00756 1.87856 1.21064 1.29218 1.95587 1.22673 0.92992 0.84296 1.01032 1.22589 0.93061 0.98776 0.97817 0.88791 1.23524 0.97369 1.00053 0.97288 1.21813 0.85428 0.94812 0.96939 0.89425 1.45379 1.11512 1.56750 1.21471 1.17626 0.82270 0.78196 0.83970 1.90718 1.83921 1.50533 1.21511 1.20173 0.95087 1.13574 0.98836 1.20564 0.90581 0.95149 0.93640 1.20626 1.03210 1.01913 0.89650 1.41659 1.14736 1.43316 1.13595 1.20684 0.93613 1.07732 0.91105 1.24627 1.08291 0.86742 0.95365 1.86520 1.73587 1.29283 1.46266 0.94316 0.71166 0.80642 0.86696 1.21961 0.97342 1.01133 0.95976 1.23269 0.95943 0.96890 0.99897 0.93173 0.93359 0.89131 0.92125 0.92351 0.88669 0.92549 0.75385 0.89954 0.90016 0.88664 0.73072 0.85985 0.75388 1.20424 1.21721 0.82818 0.89463 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 11.01 113.37 1.25 1.24 16 2 O -0.42 -2.11 10.70 -148.98 -1.59 -3.71 16 3 C 0.07 0.01 5.78 71.99 0.42 0.43 16 4 C -0.10 0.03 3.90 -10.17 -0.04 -0.01 16 5 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 6 C -0.14 -0.35 7.45 31.21 0.23 -0.12 16 7 C 0.12 0.30 4.30 45.52 0.20 0.50 16 8 H 0.09 0.54 7.50 -2.39 -0.02 0.52 16 9 N -0.70 -2.53 5.26 -443.46 -2.33 -4.86 16 10 C 0.59 5.34 7.81 86.61 0.68 6.02 16 11 O -0.58 -8.99 14.43 -4.10 -0.06 -9.05 16 12 C -0.27 -1.49 6.29 -19.04 -0.12 -1.61 16 13 C 0.12 0.28 7.17 41.78 0.30 0.58 16 14 C -0.10 -0.03 9.88 71.24 0.70 0.68 16 15 N -0.53 1.57 5.41 -171.06 -0.93 0.64 16 16 C -0.02 0.03 6.09 40.99 0.25 0.28 16 17 C -0.04 0.14 2.98 71.24 0.21 0.35 16 18 O -0.55 1.29 12.88 -148.98 -1.92 -0.63 16 19 Si 0.77 -4.60 30.96 68.60 2.12 -2.47 16 20 C -0.14 -0.26 10.45 23.62 0.25 -0.01 16 21 C -0.12 0.34 7.38 31.12 0.23 0.57 16 22 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 23 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.06 -0.08 7.85 -2.39 -0.02 -0.10 16 27 H 0.09 0.12 7.90 -2.39 -0.02 0.10 16 28 H 0.06 0.34 8.14 -2.39 -0.02 0.33 16 29 H 0.41 -0.22 7.83 -92.71 -0.73 -0.95 16 30 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.08 0.46 6.47 -2.39 -0.02 0.44 16 32 H 0.09 -0.55 8.14 -2.38 -0.02 -0.57 16 33 H 0.43 -3.87 6.72 -92.71 -0.62 -4.50 16 34 H 0.12 -0.36 7.96 -2.39 -0.02 -0.37 16 35 H 0.40 -3.92 8.70 -74.06 -0.64 -4.56 16 36 H -0.28 0.42 7.11 99.48 0.71 1.12 16 37 H -0.29 -0.57 7.11 99.48 0.71 0.14 16 38 H 0.15 -0.12 7.70 -2.91 -0.02 -0.14 16 39 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H 0.11 -0.58 8.10 -2.39 -0.02 -0.60 16 Total: 0.00 -20.20 334.35 -1.04 -21.24 By element: Atomic # 1 Polarization: -9.17 SS G_CDS: -0.89 Total: -10.06 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 4.55 Total: 8.89 kcal Atomic # 7 Polarization: -0.96 SS G_CDS: -3.26 Total: -4.22 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -3.57 Total: -13.39 kcal Atomic # 14 Polarization: -4.60 SS G_CDS: 2.12 Total: -2.47 kcal Total: -20.20 -1.04 -21.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535612_9865296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.675 kcal (2) G-P(sol) polarization free energy of solvation -20.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds