Wall clock time and date at job start Tue Mar 9 2021 13:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35445 * 125.56676 * 2 1 4 4 C 1.50706 * 126.06477 * 359.97438 * 3 2 1 5 5 O 1.42904 * 109.46917 * 149.97707 * 4 3 2 6 6 Si 1.86294 * 109.47360 * 29.97382 * 4 3 2 7 7 C 1.39835 * 107.86822 * 179.71617 * 3 2 1 8 8 C 1.50694 * 126.45988 * 180.26411 * 7 3 2 9 9 C 1.37870 * 107.08110 * 0.41752 * 7 3 2 10 10 C 1.46682 * 126.23378 * 179.84361 * 9 7 3 11 11 O 1.21693 * 119.99805 * 359.71773 * 10 9 7 12 12 N 1.34777 * 120.00182 * 179.71906 * 10 9 7 13 13 C 1.46498 * 119.99828 * 180.27909 * 12 10 9 14 14 H 1.09002 * 112.85022 * 335.91707 * 13 12 10 15 15 C 1.53782 * 113.61718 * 107.22525 * 13 12 10 16 16 C 1.53783 * 87.08212 * 139.98032 * 15 13 12 17 17 H 1.08993 * 113.61373 * 89.11550 * 16 15 13 18 18 C 1.53003 * 113.61122 * 220.02111 * 16 15 13 19 19 O 1.42902 * 109.46793 * 272.49642 * 18 16 15 20 20 C 1.35900 * 116.99635 * 180.02562 * 19 18 16 21 21 C 1.38732 * 120.05926 * 359.72085 * 20 19 18 22 22 C 1.38144 * 119.94574 * 179.70376 * 21 20 19 23 23 C 1.38263 * 120.05502 * 0.59724 * 22 21 20 24 24 C 1.38268 * 120.11164 * 359.67937 * 23 22 21 25 25 C 1.38141 * 120.05299 * 0.02562 * 24 23 22 26 26 C 1.53781 * 113.61158 * 204.72374 * 13 12 10 27 27 N 1.35539 * 125.56046 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47354 * 270.00299 * 1 2 3 29 29 H 1.09003 * 109.46955 * 29.99967 * 1 2 3 30 30 H 1.09000 * 109.47367 * 150.00023 * 1 2 3 31 31 H 1.08995 * 109.46767 * 269.97105 * 4 3 2 32 32 H 0.96696 * 113.99728 * 299.99227 * 5 4 3 33 33 H 1.48497 * 110.00123 * 58.68254 * 6 4 3 34 34 H 1.48503 * 110.00115 * 180.02562 * 6 4 3 35 35 H 1.09006 * 109.47220 * 270.20653 * 8 7 3 36 36 H 1.08994 * 109.47618 * 30.20959 * 8 7 3 37 37 H 1.09005 * 109.47152 * 150.21118 * 8 7 3 38 38 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 39 39 H 1.09002 * 113.61513 * 254.52730 * 15 13 12 40 40 H 1.08999 * 113.61337 * 25.42719 * 15 13 12 41 41 H 1.09002 * 109.47288 * 32.49672 * 18 16 15 42 42 H 1.08999 * 109.46924 * 152.49697 * 18 16 15 43 43 H 1.08006 * 120.02316 * 0.02562 * 21 20 19 44 44 H 1.08002 * 119.97357 * 180.28213 * 22 21 20 45 45 H 1.08003 * 119.94723 * 179.70790 * 23 22 21 46 46 H 1.07996 * 119.97317 * 180.02562 * 24 23 22 47 47 H 1.08001 * 120.02290 * 180.02562 * 25 24 23 48 48 H 1.09001 * 113.61403 * 334.56380 * 26 13 12 49 49 H 1.08994 * 113.61554 * 105.38809 * 26 13 12 50 50 H 0.96995 * 125.67717 * 0.04976 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8199 2.5320 -0.0005 5 8 2.7767 3.3519 0.6737 6 14 0.1799 2.6422 0.8763 7 6 3.6269 0.6767 0.0066 8 6 4.8485 1.5591 0.0146 9 6 3.6121 -0.7019 0.0009 10 6 4.7859 -1.5816 0.0014 11 8 5.9048 -1.1032 0.0021 12 7 4.6252 -2.9198 0.0011 13 6 5.7975 -3.7983 0.0078 14 1 6.6884 -3.3184 -0.3974 15 6 6.0330 -4.5011 1.3552 16 6 6.4055 -5.7551 0.5467 17 1 7.4632 -5.8108 0.2898 18 6 5.8699 -7.0549 1.1505 19 8 6.8075 -7.5591 2.1037 20 6 6.4821 -8.7171 2.7362 21 6 5.2824 -9.3521 2.4495 22 6 4.9568 -10.5323 3.0892 23 6 5.8197 -11.0744 4.0236 24 6 7.0134 -10.4406 4.3153 25 6 7.3464 -9.2633 3.6739 26 6 5.5261 -5.1921 -0.5824 27 7 2.2952 -1.1026 0.0005 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.7063 2.8767 -1.0283 32 1 2.9285 3.1020 1.5954 33 1 0.3143 2.1453 2.2692 34 1 -0.2996 4.0477 0.8821 35 1 5.1465 1.7764 -1.0112 36 1 4.6203 2.4909 0.5318 37 1 5.6625 1.0480 0.5288 38 1 3.7333 -3.3011 0.0009 39 1 6.8646 -4.0859 1.9248 40 1 5.1276 -4.6183 1.9506 41 1 4.9180 -6.8609 1.6448 42 1 5.7251 -7.7905 0.3592 43 1 4.6060 -8.9266 1.7229 44 1 4.0250 -11.0294 2.8630 45 1 5.5612 -11.9948 4.5262 46 1 7.6860 -10.8662 5.0453 47 1 8.2792 -8.7689 3.9018 48 1 4.4821 -5.4984 -0.5167 49 1 5.9471 -5.3344 -1.5776 50 1 1.9832 -2.0210 0.0002 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_12297754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:06 Heat of formation + Delta-G solvation = -11.910621 kcal Electronic energy + Delta-G solvation = -30718.613147 eV Core-core repulsion = 26486.042470 eV Total energy + Delta-G solvation = -4232.570676 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.68769 -41.37175 -40.71946 -39.36648 -38.10123 -37.92384 -34.94870 -33.66098 -32.98064 -32.02293 -31.06352 -29.32044 -29.26588 -27.42075 -26.78593 -26.38257 -24.38298 -23.43601 -22.84290 -22.05348 -21.12213 -20.68015 -20.26340 -19.35113 -19.07546 -17.84002 -17.49358 -16.96494 -16.94300 -16.77695 -16.64338 -16.44028 -16.14703 -15.86312 -15.70232 -15.31022 -15.05156 -14.80678 -14.39686 -14.35156 -14.29599 -14.12631 -13.96221 -13.90677 -13.72289 -13.52862 -13.32138 -13.27561 -13.11882 -13.02089 -12.61763 -12.54242 -12.38683 -12.33225 -12.07214 -11.86513 -11.82717 -11.67978 -11.34264 -11.15299 -10.53057 -10.22304 -9.98364 -9.55214 -9.19587 -8.97506 -4.77220 0.33956 0.36213 0.46410 1.22747 1.66826 1.70037 1.90955 2.06417 2.09710 2.23009 2.25572 2.81978 3.35241 3.41553 3.46562 3.71126 3.72168 3.82192 3.83903 3.88002 3.94891 3.97563 4.18985 4.21203 4.25887 4.27450 4.34555 4.47812 4.51376 4.52770 4.62720 4.65608 4.66447 4.68740 4.71641 4.76884 4.79708 4.81919 4.88867 4.92503 4.98756 5.05562 5.10450 5.15326 5.24769 5.32333 5.32587 5.45561 5.46969 5.58803 5.69734 5.82354 5.83956 6.37782 6.44715 6.50854 6.59276 7.07956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.087 3.913 3 C -0.233 4.233 4 C -0.052 4.052 5 O -0.549 6.549 6 Si 0.761 3.239 7 C -0.071 4.071 8 C -0.094 4.094 9 C -0.083 4.083 10 C 0.587 3.413 11 O -0.570 6.570 12 N -0.705 5.705 13 C 0.119 3.881 14 H 0.097 0.903 15 C -0.145 4.145 16 C -0.104 4.104 17 H 0.098 0.902 18 C 0.069 3.931 19 O -0.333 6.333 20 C 0.111 3.889 21 C -0.217 4.217 22 C -0.088 4.088 23 C -0.169 4.169 24 C -0.088 4.088 25 C -0.176 4.176 26 C -0.115 4.115 27 N -0.516 5.516 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.381 0.619 33 H -0.292 1.292 34 H -0.305 1.305 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.411 0.589 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.141 0.859 46 H 0.145 0.855 47 H 0.128 0.872 48 H 0.115 0.885 49 H 0.090 0.910 50 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 -7.347 -1.812 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.033 4.033 3 C -0.239 4.239 4 C -0.161 4.161 5 O -0.357 6.357 6 Si 0.667 3.333 7 C -0.080 4.080 8 C -0.150 4.150 9 C -0.195 4.195 10 C 0.377 3.623 11 O -0.449 6.449 12 N -0.356 5.356 13 C 0.014 3.986 14 H 0.115 0.885 15 C -0.184 4.184 16 C -0.123 4.123 17 H 0.116 0.884 18 C -0.005 4.005 19 O -0.247 6.247 20 C 0.066 3.934 21 C -0.235 4.235 22 C -0.105 4.105 23 C -0.187 4.187 24 C -0.106 4.106 25 C -0.194 4.194 26 C -0.153 4.153 27 N -0.115 5.115 28 H 0.120 0.880 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.230 0.770 33 H -0.219 1.219 34 H -0.234 1.234 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.248 0.752 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.163 0.837 44 H 0.164 0.836 45 H 0.159 0.841 46 H 0.163 0.837 47 H 0.146 0.854 48 H 0.133 0.867 49 H 0.109 0.891 50 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -9.546 -6.478 -1.732 11.665 hybrid contribution 1.165 -0.115 0.791 1.413 sum -8.380 -6.593 -0.942 10.704 Atomic orbital electron populations 1.20716 0.84375 1.05764 1.05688 1.20704 0.95095 0.84803 1.02678 1.19652 0.92484 0.95801 1.15992 1.24660 1.02047 0.86588 1.02809 1.86514 1.61952 1.57739 1.29469 0.94462 0.79021 0.79922 0.79934 1.19930 0.95388 0.91511 1.01160 1.20417 0.94132 0.98867 1.01632 1.19911 0.83868 0.93664 1.22032 1.17272 0.87192 0.82344 0.75527 1.90820 1.26008 1.75907 1.52193 1.45676 1.10355 1.04599 1.74985 1.22471 0.89374 0.89269 0.97471 0.88530 1.23565 1.02241 0.95681 0.96896 1.22296 1.01323 0.91633 0.97009 0.88408 1.22971 0.91708 0.95310 0.90553 1.86061 1.47595 1.36703 1.54388 1.19255 0.94324 0.86386 0.93411 1.21512 0.97443 0.99110 1.05442 1.21330 0.99959 0.94505 0.94747 1.21433 0.95154 1.01898 1.00221 1.21287 0.97163 0.93720 0.98395 1.20704 1.00985 0.98528 0.99223 1.23298 1.01821 0.91792 0.98429 1.41668 1.03876 1.09304 1.56612 0.88040 0.86478 0.86300 0.86867 0.77046 1.21884 1.23364 0.92815 0.89771 0.92630 0.75192 0.92479 0.88651 0.90555 0.90441 0.83719 0.83649 0.84104 0.83729 0.85370 0.86667 0.89124 0.72473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.52 8.21 71.24 0.59 2.11 16 2 C 0.09 -0.42 6.84 41.34 0.28 -0.13 16 3 C -0.23 -0.46 5.38 -20.12 -0.11 -0.57 16 4 C -0.05 -0.07 3.03 71.24 0.22 0.15 16 5 O -0.55 -3.08 10.20 -148.98 -1.52 -4.60 16 6 Si 0.76 -1.89 26.76 68.60 1.84 -0.05 16 7 C -0.07 -0.53 6.15 -19.57 -0.12 -0.65 16 8 C -0.09 -0.97 9.51 71.23 0.68 -0.30 16 9 C -0.08 -0.33 7.06 40.35 0.28 -0.04 16 10 C 0.59 3.80 7.79 86.45 0.67 4.48 16 11 O -0.57 -8.91 14.40 -4.33 -0.06 -8.98 16 12 N -0.71 1.57 5.35 -443.99 -2.38 -0.81 16 13 C 0.12 -0.17 4.24 45.52 0.19 0.02 16 14 H 0.10 0.40 7.47 -2.39 -0.02 0.38 16 15 C -0.15 0.19 7.43 31.12 0.23 0.42 16 16 C -0.10 0.38 4.01 -10.26 -0.04 0.34 16 17 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 18 C 0.07 -0.22 4.58 71.98 0.33 0.11 16 19 O -0.33 -1.47 10.14 -92.42 -0.94 -2.41 16 20 C 0.11 0.52 6.69 22.51 0.15 0.67 16 21 C -0.22 -0.20 9.04 22.37 0.20 0.00 16 22 C -0.09 0.01 10.04 22.25 0.22 0.24 16 23 C -0.17 -0.08 10.04 22.28 0.22 0.14 16 24 C -0.09 -0.16 10.04 22.25 0.22 0.06 16 25 C -0.18 -0.82 9.99 22.36 0.22 -0.60 16 26 C -0.12 0.88 7.39 31.12 0.23 1.11 16 27 N -0.52 2.72 5.99 -171.93 -1.03 1.69 16 28 H 0.10 -1.53 7.13 -2.39 -0.02 -1.55 16 29 H 0.12 -1.89 5.17 -2.39 -0.01 -1.90 16 30 H 0.12 -2.25 8.14 -2.39 -0.02 -2.27 16 31 H 0.11 0.04 7.96 -2.39 -0.02 0.02 16 32 H 0.38 0.50 8.46 -74.06 -0.63 -0.13 16 33 H -0.29 -0.76 7.11 99.48 0.71 -0.06 16 34 H -0.30 -1.78 7.11 99.48 0.71 -1.08 16 35 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.08 0.74 5.47 -2.39 -0.01 0.72 16 37 H 0.05 0.77 6.49 -2.38 -0.02 0.76 16 38 H 0.41 -4.10 7.86 -92.71 -0.73 -4.83 16 39 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.10 -0.32 7.90 -2.39 -0.02 -0.34 16 41 H 0.08 -0.46 7.35 -2.39 -0.02 -0.47 16 42 H 0.08 -0.44 7.67 -2.39 -0.02 -0.45 16 43 H 0.15 -0.58 6.30 -2.91 -0.02 -0.60 16 44 H 0.15 -0.73 8.06 -2.91 -0.02 -0.76 16 45 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 46 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 47 H 0.13 0.48 8.06 -2.91 -0.02 0.46 16 48 H 0.12 -1.46 8.08 -2.39 -0.02 -1.48 16 49 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 50 H 0.43 -5.83 8.19 -92.71 -0.76 -6.59 16 Total: 0.00 -28.29 398.95 -0.49 -28.78 By element: Atomic # 1 Polarization: -20.10 SS G_CDS: -1.08 Total: -21.18 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 4.68 Total: 7.55 kcal Atomic # 7 Polarization: 4.29 SS G_CDS: -3.41 Total: 0.89 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -2.52 Total: -15.98 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: 1.84 Total: -0.05 kcal Total: -28.29 -0.49 -28.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_12297754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.865 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds