Wall clock time and date at job start Tue Mar 9 2021 13:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35657 * 116.99861 * 2 1 4 4 C 1.38403 * 120.11810 * 359.97438 * 3 2 1 5 5 C 1.38731 * 120.03054 * 180.02562 * 4 3 2 6 6 O 1.35715 * 119.86566 * 180.02562 * 5 4 3 7 7 C 1.42902 * 116.99747 * 359.97438 * 6 5 4 8 8 C 1.39140 * 120.27476 * 0.02562 * 5 4 3 9 9 C 1.50695 * 119.88236 * 180.02562 * 8 5 4 10 10 O 1.42897 * 109.47716 * 74.97251 * 9 8 5 11 11 Si 1.86307 * 109.47335 * 194.97722 * 9 8 5 12 12 C 1.37585 * 120.24167 * 359.97438 * 8 5 4 13 13 C 1.39824 * 119.96340 * 0.02562 * 12 8 5 14 14 C 1.47300 * 120.13555 * 179.97438 * 13 12 8 15 15 O 1.21616 * 119.99784 * 179.97438 * 14 13 12 16 16 N 1.34774 * 119.99970 * 359.97438 * 14 13 12 17 17 C 1.46500 * 119.99912 * 179.97438 * 16 14 13 18 18 H 1.09004 * 112.84517 * 23.80856 * 17 16 14 19 19 C 1.53782 * 113.61300 * 155.00202 * 17 16 14 20 20 C 1.53781 * 87.08218 * 139.98461 * 19 17 16 21 21 H 1.09005 * 113.61416 * 89.19474 * 20 19 17 22 22 C 1.52990 * 113.61505 * 220.01882 * 20 19 17 23 23 O 1.42900 * 109.47377 * 184.99776 * 22 20 19 24 24 C 1.35896 * 117.00061 * 179.97438 * 23 22 20 25 25 C 1.38732 * 120.06072 * 359.72653 * 24 23 22 26 26 C 1.38143 * 119.94699 * 179.73967 * 25 24 23 27 27 C 1.38265 * 120.05553 * 0.51182 * 26 25 24 28 28 C 1.38274 * 120.11141 * 359.76734 * 27 26 25 29 29 C 1.38139 * 120.05229 * 359.97343 * 28 27 26 30 30 C 1.53779 * 113.61758 * 252.49803 * 17 16 14 31 31 H 1.08989 * 109.47389 * 60.00399 * 1 2 3 32 32 H 1.09000 * 109.46905 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47315 * 299.99831 * 1 2 3 34 34 H 1.07992 * 119.98672 * 0.04547 * 4 3 2 35 35 H 1.09008 * 109.46846 * 299.99567 * 7 6 5 36 36 H 1.08999 * 109.47393 * 59.99378 * 7 6 5 37 37 H 1.09003 * 109.47525 * 179.97438 * 7 6 5 38 38 H 1.09007 * 109.47095 * 314.97345 * 9 8 5 39 39 H 0.96700 * 114.00032 * 300.00772 * 10 9 8 40 40 H 1.48493 * 110.00057 * 59.99634 * 11 9 8 41 41 H 1.48502 * 109.99848 * 181.31692 * 11 9 8 42 42 H 1.07997 * 120.02474 * 179.72439 * 12 8 5 43 43 H 0.96998 * 119.99976 * 0.02562 * 16 14 13 44 44 H 1.09007 * 113.61147 * 254.53235 * 19 17 16 45 45 H 1.08997 * 113.61743 * 25.43638 * 19 17 16 46 46 H 1.09005 * 109.47376 * 304.99660 * 22 20 19 47 47 H 1.08998 * 109.47361 * 64.99774 * 22 20 19 48 48 H 1.08007 * 120.02374 * 359.97438 * 25 24 23 49 49 H 1.08001 * 119.97231 * 180.23312 * 26 25 24 50 50 H 1.07997 * 119.94657 * 179.73945 * 27 26 25 51 51 H 1.07993 * 119.97029 * 179.97438 * 28 27 26 52 52 H 1.08009 * 120.02470 * 179.97438 * 29 28 27 53 53 H 1.08993 * 113.61707 * 334.57277 * 30 17 16 54 54 H 1.09004 * 113.61319 * 105.46922 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2934 2.3710 -0.0005 5 6 1.9251 3.6062 -0.0011 6 8 1.1850 4.7437 -0.0011 7 6 -0.2361 4.5931 -0.0011 8 6 3.3143 3.6836 -0.0016 9 6 3.9913 5.0299 -0.0016 10 8 3.8938 5.6122 1.2997 11 14 5.7861 4.8226 -0.4563 12 6 4.0723 2.5353 -0.0011 13 6 3.4461 1.2852 -0.0005 14 6 4.2539 0.0534 -0.0006 15 8 3.7066 -1.0326 0.0004 16 7 5.5995 0.1300 -0.0016 17 6 6.4029 -1.0950 -0.0010 18 1 5.8661 -1.9533 -0.4054 19 6 7.8081 -0.9103 -0.5977 20 6 8.3203 -1.8253 0.5272 21 1 8.3097 -2.8840 0.2679 22 6 9.6540 -1.3734 1.1253 23 8 10.1031 -2.3425 2.0746 24 6 11.2823 -2.0915 2.7018 25 6 11.9955 -0.9390 2.4054 26 6 13.1912 -0.6835 3.0482 27 6 13.6827 -1.5804 3.9786 28 6 12.9768 -2.7327 4.2716 29 6 11.7779 -2.9901 3.6354 30 6 7.0960 -1.3766 1.3425 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 0.2149 2.3164 -0.0002 35 1 -0.5432 4.0439 -0.8912 36 1 -0.5433 4.0438 0.8888 37 1 -0.7058 5.5767 -0.0006 38 1 3.5053 5.6810 -0.7283 39 1 2.9856 5.7494 1.6021 40 1 5.9011 4.2180 -1.8077 41 1 6.4723 6.1393 -0.4289 42 1 5.1504 2.5995 -0.0060 43 1 6.0359 0.9963 -0.0020 44 1 7.9193 -1.3389 -1.5938 45 1 8.1795 0.1123 -0.5319 46 1 10.3934 -1.2735 0.3306 47 1 9.5224 -0.4121 1.6220 48 1 11.6141 -0.2402 1.6754 49 1 13.7449 0.2155 2.8206 50 1 14.6198 -1.3810 4.4770 51 1 13.3630 -3.4319 4.9983 52 1 11.2270 -3.8905 3.8643 53 1 7.2727 -0.4815 1.9387 54 1 6.6323 -2.1815 1.9128 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_12297780.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:09 Heat of formation + Delta-G solvation = -89.630262 kcal Electronic energy + Delta-G solvation = -37215.703418 eV Core-core repulsion = 32279.597952 eV Total energy + Delta-G solvation = -4936.105466 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.181 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.15518 -41.28539 -40.74363 -40.11489 -39.25978 -38.39384 -38.00233 -37.00481 -34.65976 -32.26105 -32.03065 -31.76698 -30.91180 -29.06461 -28.98438 -28.13313 -26.65013 -26.11550 -25.17753 -24.00766 -23.35564 -22.90274 -22.21165 -21.53165 -20.63612 -20.00615 -19.14091 -18.61705 -18.58092 -17.85825 -17.53659 -17.22447 -17.11693 -16.84160 -16.80181 -16.63349 -16.46536 -16.20485 -16.06555 -15.80301 -15.64004 -15.54028 -15.33378 -15.16263 -14.42767 -14.30690 -14.22773 -14.21330 -14.06013 -13.99503 -13.56128 -13.40711 -13.37708 -13.18803 -12.89118 -12.69656 -12.56951 -12.54075 -12.50515 -12.30817 -12.17029 -11.95965 -11.76512 -11.68155 -11.57326 -11.36084 -11.26180 -11.19024 -10.83334 -10.05978 -9.92917 -9.91895 -9.21445 -9.12447 -4.94868 -0.29998 0.05950 0.42577 0.52922 1.37209 1.60964 1.73558 1.99250 2.03647 2.08027 2.15374 2.33456 2.58821 2.88337 3.42855 3.47113 3.52000 3.59005 3.68796 3.71577 3.84115 3.87697 3.93376 3.95586 4.02586 4.07636 4.15557 4.20775 4.24780 4.25441 4.27584 4.29032 4.31803 4.36777 4.37605 4.45160 4.54110 4.60430 4.61824 4.65298 4.73307 4.75753 4.79491 4.80628 4.88847 4.91332 4.99029 5.06888 5.11069 5.12231 5.25527 5.30919 5.39307 5.51846 5.63001 5.64748 5.90426 5.96105 6.24784 6.52590 6.57763 6.60695 7.27497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.304 6.304 3 C 0.214 3.786 4 C -0.308 4.308 5 C 0.204 3.796 6 O -0.318 6.318 7 C 0.013 3.987 8 C -0.199 4.199 9 C -0.077 4.077 10 O -0.547 6.547 11 Si 0.803 3.197 12 C 0.009 3.991 13 C -0.225 4.225 14 C 0.563 3.437 15 O -0.566 6.566 16 N -0.707 5.707 17 C 0.119 3.881 18 H 0.095 0.905 19 C -0.119 4.119 20 C -0.104 4.104 21 H 0.096 0.904 22 C 0.067 3.933 23 O -0.333 6.333 24 C 0.113 3.887 25 C -0.216 4.216 26 C -0.088 4.088 27 C -0.170 4.170 28 C -0.088 4.088 29 C -0.176 4.176 30 C -0.145 4.145 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.164 0.836 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.373 0.627 40 H -0.252 1.252 41 H -0.294 1.294 42 H 0.167 0.833 43 H 0.414 0.586 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.147 0.853 49 H 0.145 0.855 50 H 0.140 0.860 51 H 0.144 0.856 52 H 0.128 0.872 53 H 0.100 0.900 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 4.449 -0.884 4.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.215 6.215 3 C 0.165 3.835 4 C -0.327 4.327 5 C 0.157 3.843 6 O -0.230 6.230 7 C -0.081 4.081 8 C -0.201 4.201 9 C -0.184 4.184 10 O -0.353 6.353 11 Si 0.704 3.296 12 C -0.009 4.009 13 C -0.230 4.230 14 C 0.352 3.648 15 O -0.446 6.446 16 N -0.359 5.359 17 C 0.014 3.986 18 H 0.113 0.887 19 C -0.157 4.157 20 C -0.123 4.123 21 H 0.114 0.886 22 C -0.007 4.007 23 O -0.247 6.247 24 C 0.068 3.932 25 C -0.234 4.234 26 C -0.106 4.106 27 C -0.188 4.188 28 C -0.106 4.106 29 C -0.195 4.195 30 C -0.184 4.184 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.182 0.818 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.222 0.778 40 H -0.177 1.177 41 H -0.221 1.221 42 H 0.183 0.817 43 H 0.252 0.748 44 H 0.108 0.892 45 H 0.137 0.863 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.164 0.836 49 H 0.163 0.837 50 H 0.158 0.842 51 H 0.162 0.838 52 H 0.146 0.854 53 H 0.118 0.882 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.215 3.703 -1.482 3.994 hybrid contribution -2.317 0.839 -0.276 2.480 sum -2.102 4.543 -1.758 5.305 Atomic orbital electron populations 1.23473 0.76528 1.05782 1.02633 1.86371 1.23199 1.25892 1.86037 1.19006 0.91156 0.84773 0.88563 1.21414 1.02035 0.90735 1.18494 1.18897 0.90683 0.85145 0.89603 1.86035 1.21417 1.28603 1.86930 1.23488 0.75831 1.06085 1.02706 1.19572 0.90760 0.96968 1.12774 1.25511 1.14490 0.90237 0.88131 1.86682 1.32998 1.83513 1.32103 0.92632 0.72935 0.83134 0.80944 1.20862 0.99832 0.88779 0.91403 1.19217 0.90914 0.93935 1.18885 1.18070 0.82832 0.88218 0.75670 1.90816 1.72449 1.30315 1.50979 1.45752 1.04893 1.10315 1.74954 1.22449 0.90600 0.88000 0.97549 0.88689 1.23348 0.92215 1.01777 0.98359 1.22285 0.91711 1.01133 0.97132 0.88585 1.23008 0.95756 0.91291 0.90663 1.86058 1.35123 1.48770 1.54757 1.19250 0.85932 0.94676 0.93370 1.21529 0.98208 0.98442 1.05267 1.21325 0.94911 0.99575 0.94753 1.21418 1.01696 0.95327 1.00392 1.21271 0.93374 0.97574 0.98415 1.20697 0.98565 1.00796 0.99415 1.23581 0.95801 1.02089 0.96913 0.91029 0.86923 0.90994 0.81824 0.91431 0.91079 0.85876 0.91232 0.77802 1.17672 1.22138 0.81662 0.74796 0.89236 0.86300 0.90491 0.90220 0.83574 0.83727 0.84238 0.83826 0.85383 0.88196 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -2.59 8.56 -68.76 -0.59 -3.18 16 3 C 0.21 1.31 6.70 22.82 0.15 1.46 16 4 C -0.31 -0.33 8.01 22.43 0.18 -0.15 16 5 C 0.20 0.24 6.62 22.60 0.15 0.39 16 6 O -0.32 0.34 9.36 -90.37 -0.85 -0.51 16 7 C 0.01 -0.10 9.80 113.37 1.11 1.02 16 8 C -0.20 -0.20 5.27 -19.80 -0.10 -0.31 16 9 C -0.08 -0.04 2.32 71.23 0.17 0.13 16 10 O -0.55 -1.10 12.65 -148.98 -1.89 -2.99 16 11 Si 0.80 -2.16 30.16 68.60 2.07 -0.09 16 12 C 0.01 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -1.17 5.89 -20.00 -0.12 -1.29 16 14 C 0.56 4.43 7.76 86.63 0.67 5.10 16 15 O -0.57 -9.51 14.75 16.88 0.25 -9.26 16 16 N -0.71 0.22 5.30 -443.42 -2.35 -2.13 16 17 C 0.12 -0.04 4.24 45.52 0.19 0.15 16 18 H 0.10 0.47 7.46 -2.39 -0.02 0.45 16 19 C -0.12 0.80 7.39 31.12 0.23 1.03 16 20 C -0.10 0.31 4.01 -10.27 -0.04 0.27 16 21 H 0.10 -0.07 8.14 -2.38 -0.02 -0.09 16 22 C 0.07 -0.18 4.58 71.98 0.33 0.15 16 23 O -0.33 -1.60 10.14 -92.39 -0.94 -2.54 16 24 C 0.11 0.58 6.69 22.51 0.15 0.73 16 25 C -0.22 -0.32 9.04 22.37 0.20 -0.12 16 26 C -0.09 -0.05 10.04 22.25 0.22 0.17 16 27 C -0.17 -0.20 10.04 22.28 0.22 0.02 16 28 C -0.09 -0.21 10.04 22.25 0.22 0.01 16 29 C -0.18 -0.91 9.99 22.37 0.22 -0.69 16 30 C -0.15 0.10 7.43 31.12 0.23 0.33 16 31 H 0.07 -0.33 7.66 -2.39 -0.02 -0.35 16 32 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.07 -0.33 7.66 -2.39 -0.02 -0.35 16 34 H 0.16 -0.68 4.50 -2.91 -0.01 -0.69 16 35 H 0.07 -0.59 7.65 -2.38 -0.02 -0.61 16 36 H 0.07 -0.66 7.65 -2.39 -0.02 -0.68 16 37 H 0.12 -1.32 8.14 -2.39 -0.02 -1.34 16 38 H 0.07 0.08 7.82 -2.38 -0.02 0.06 16 39 H 0.37 -0.59 8.58 -74.06 -0.64 -1.23 16 40 H -0.25 0.41 7.11 99.48 0.71 1.11 16 41 H -0.29 -1.32 7.11 99.48 0.71 -0.61 16 42 H 0.17 -1.22 3.43 -2.91 -0.01 -1.23 16 43 H 0.41 -3.14 6.75 -92.71 -0.63 -3.77 16 44 H 0.09 -0.64 8.14 -2.38 -0.02 -0.65 16 45 H 0.12 -1.41 8.08 -2.39 -0.02 -1.43 16 46 H 0.08 -0.39 7.65 -2.38 -0.02 -0.41 16 47 H 0.08 -0.45 7.38 -2.39 -0.02 -0.46 16 48 H 0.15 -0.51 6.30 -2.91 -0.02 -0.53 16 49 H 0.14 -0.61 8.06 -2.91 -0.02 -0.63 16 50 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 51 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 52 H 0.13 0.53 8.06 -2.91 -0.02 0.51 16 53 H 0.10 -0.30 7.90 -2.39 -0.02 -0.32 16 54 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 Total: 0.00 -26.25 438.33 1.14 -25.11 By element: Atomic # 1 Polarization: -13.84 SS G_CDS: -0.26 Total: -14.10 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 5.69 Total: 9.69 kcal Atomic # 7 Polarization: 0.22 SS G_CDS: -2.35 Total: -2.13 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -4.01 Total: -18.48 kcal Atomic # 14 Polarization: -2.16 SS G_CDS: 2.07 Total: -0.09 kcal Total: -26.25 1.14 -25.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_12297780.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.518 kcal (2) G-P(sol) polarization free energy of solvation -26.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds