Wall clock time and date at job start Tue Mar 9 2021 13:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86300 * 109.47241 * 2 1 4 4 C 1.50700 * 109.47341 * 240.00126 * 2 1 3 5 5 C 1.38236 * 120.00128 * 119.72458 * 4 2 1 6 6 C 1.38238 * 119.99670 * 179.79167 * 5 4 2 7 7 C 1.38233 * 120.00040 * 0.44092 * 6 5 4 8 8 C 1.50700 * 119.99639 * 179.83306 * 7 6 5 9 9 C 1.50693 * 109.47290 * 269.97626 * 8 7 6 10 10 O 1.21279 * 120.00122 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99954 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00001 * 180.02562 * 11 9 8 13 13 H 1.09004 * 112.85228 * 334.66897 * 12 11 9 14 14 C 1.53788 * 113.61433 * 105.85841 * 12 11 9 15 15 C 1.53954 * 87.01788 * 139.95487 * 14 12 11 16 16 H 1.09002 * 113.54220 * 89.18774 * 15 14 12 17 17 C 1.53001 * 113.74230 * 220.05912 * 15 14 12 18 18 O 1.42900 * 109.46804 * 272.59700 * 17 15 14 19 19 C 1.35902 * 116.99890 * 179.97438 * 18 17 15 20 20 C 1.38735 * 120.05229 * 359.72697 * 19 18 17 21 21 C 1.38148 * 119.94114 * 179.70182 * 20 19 18 22 22 C 1.38271 * 120.05575 * 0.59372 * 21 20 19 23 23 C 1.38264 * 120.11142 * 359.68082 * 22 21 20 24 24 C 1.38152 * 120.05387 * 0.02562 * 23 22 21 25 25 C 1.53773 * 113.61656 * 203.46923 * 12 11 9 26 26 C 1.38234 * 120.00074 * 359.81276 * 7 6 5 27 27 C 1.38234 * 119.99669 * 300.00231 * 4 2 1 28 28 H 0.96693 * 114.00306 * 59.99646 * 1 2 3 29 29 H 1.09000 * 109.47349 * 120.00016 * 2 1 3 30 30 H 1.48506 * 110.00048 * 298.68597 * 3 2 1 31 31 H 1.48502 * 109.99996 * 59.99922 * 3 2 1 32 32 H 1.07995 * 119.99649 * 0.02562 * 5 4 2 33 33 H 1.07997 * 119.99581 * 180.27186 * 6 5 4 34 34 H 1.08998 * 109.47249 * 29.98436 * 8 7 6 35 35 H 1.09006 * 109.46680 * 149.98091 * 8 7 6 36 36 H 0.96996 * 119.99761 * 359.97438 * 11 9 8 37 37 H 1.09002 * 113.61404 * 254.53202 * 14 12 11 38 38 H 1.08996 * 113.61390 * 25.43654 * 14 12 11 39 39 H 1.08998 * 109.47134 * 32.59510 * 17 15 14 40 40 H 1.08997 * 109.47417 * 152.59276 * 17 15 14 41 41 H 1.07997 * 120.03346 * 359.97438 * 20 19 18 42 42 H 1.08000 * 119.97178 * 180.27504 * 21 20 19 43 43 H 1.07998 * 119.94281 * 179.69993 * 22 21 20 44 44 H 1.07995 * 119.97786 * 180.02562 * 23 22 21 45 45 H 1.08004 * 120.02538 * 180.02562 * 24 23 22 46 46 H 1.09002 * 113.61363 * 334.56166 * 25 12 11 47 47 H 1.08994 * 113.62043 * 105.47032 * 25 12 11 48 48 H 1.07999 * 119.99614 * 180.02562 * 26 7 6 49 49 H 1.08003 * 120.00106 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7214 -0.0369 -2.1433 6 6 3.1858 -0.6899 -3.2698 7 6 2.8525 -2.0135 -3.4880 8 6 3.3557 -2.7242 -4.7180 9 6 2.3632 -2.5523 -5.8388 10 8 1.3470 -1.9159 -5.6567 11 7 2.6043 -3.1068 -7.0434 12 6 1.6397 -2.9392 -8.1332 13 1 0.6257 -2.7576 -7.7768 14 6 2.0989 -1.9477 -9.2154 15 6 1.5064 -2.9242 -10.2477 16 1 0.4558 -2.7378 -10.4704 17 6 2.3613 -3.0835 -11.5065 18 8 2.0035 -2.0771 -12.4557 19 6 2.6742 -2.0775 -13.6377 20 6 3.6605 -3.0234 -13.8766 21 6 4.3366 -3.0255 -15.0813 22 6 4.0396 -2.0783 -16.0438 23 6 3.0610 -1.1309 -15.8059 24 6 2.3778 -1.1284 -14.6051 25 6 1.7278 -4.0355 -9.2079 26 6 2.0582 -2.6855 -2.5779 27 6 1.5974 -2.0338 -1.4492 28 1 -0.3933 0.4417 -0.7649 29 1 1.7923 -0.5138 0.8900 30 1 1.5878 2.4586 -1.2242 31 1 1.5615 2.4679 1.2085 32 1 2.9789 0.9982 -1.9743 33 1 3.8066 -0.1650 -3.9806 34 1 4.3156 -2.3016 -5.0147 35 1 3.4776 -3.7853 -4.5002 36 1 3.4168 -3.6161 -7.1890 37 1 1.5838 -0.9879 -9.1751 38 1 3.1820 -1.8455 -9.2826 39 1 3.4146 -2.9792 -11.2459 40 1 2.1902 -4.0690 -11.9397 41 1 3.8966 -3.7603 -13.1232 42 1 5.1015 -3.7645 -15.2695 43 1 4.5727 -2.0786 -16.9830 44 1 2.8305 -0.3923 -16.5593 45 1 1.6132 -0.3884 -14.4199 46 1 2.7093 -4.5051 -9.2731 47 1 0.9137 -4.7587 -9.1618 48 1 1.7982 -3.7198 -2.7483 49 1 0.9767 -2.5588 -0.7381 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_12335836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:17 Heat of formation + Delta-G solvation = -26.371941 kcal Electronic energy + Delta-G solvation = -29136.895188 eV Core-core repulsion = 24996.434811 eV Total energy + Delta-G solvation = -4140.460377 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50670 -41.04657 -40.42733 -39.39789 -38.11295 -37.75281 -34.69215 -33.96917 -32.02179 -31.93441 -31.09036 -29.97843 -28.81594 -26.75079 -25.95022 -24.30748 -23.81626 -23.39639 -22.72187 -21.95249 -21.43440 -20.58263 -19.18927 -18.58413 -18.03452 -17.77414 -17.14070 -16.98046 -16.89874 -16.67926 -16.40380 -16.29330 -16.12756 -15.98681 -15.53465 -15.31663 -15.02075 -14.78756 -14.48255 -14.37772 -14.26692 -14.09067 -14.00076 -13.48522 -13.36025 -13.31710 -13.08893 -12.96380 -12.81037 -12.56102 -12.37394 -12.28270 -12.04796 -12.01188 -11.83348 -11.65466 -11.63617 -11.30143 -10.95655 -10.63884 -10.04321 -9.97389 -9.87437 -9.61787 -9.18644 -4.97034 0.23658 0.37078 0.45473 0.47348 1.28299 1.57704 1.62313 1.91629 2.07783 2.29586 2.79232 2.82878 3.37114 3.40102 3.50385 3.60808 3.74995 3.76249 3.80123 3.89143 3.90900 3.95712 4.03760 4.05387 4.22761 4.27724 4.28948 4.36776 4.37591 4.46983 4.48871 4.53854 4.54264 4.63369 4.67793 4.70908 4.72404 4.74984 4.79846 4.98158 5.01666 5.03050 5.06557 5.08780 5.24900 5.33525 5.37943 5.46628 5.52881 5.57243 5.59284 5.59654 5.84874 6.01933 6.40971 6.45704 6.57440 7.28458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.085 4.085 3 Si 0.771 3.229 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.111 4.111 7 C -0.072 4.072 8 C -0.098 4.098 9 C 0.512 3.488 10 O -0.584 6.584 11 N -0.708 5.708 12 C 0.119 3.881 13 H 0.089 0.911 14 C -0.144 4.144 15 C -0.107 4.107 16 H 0.094 0.906 17 C 0.069 3.931 18 O -0.334 6.334 19 C 0.112 3.888 20 C -0.217 4.217 21 C -0.088 4.088 22 C -0.169 4.169 23 C -0.088 4.088 24 C -0.176 4.176 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.107 4.107 28 H 0.384 0.616 29 H 0.126 0.874 30 H -0.291 1.291 31 H -0.301 1.301 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.420 0.580 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.128 0.872 46 H 0.116 0.884 47 H 0.087 0.913 48 H 0.132 0.868 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.424 -5.121 -3.123 10.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.193 4.193 3 Si 0.677 3.323 4 C -0.126 4.126 5 C -0.141 4.141 6 C -0.129 4.129 7 C -0.072 4.072 8 C -0.137 4.137 9 C 0.300 3.700 10 O -0.463 6.463 11 N -0.360 5.360 12 C 0.013 3.987 13 H 0.107 0.893 14 C -0.183 4.183 15 C -0.126 4.126 16 H 0.112 0.888 17 C -0.005 4.005 18 O -0.248 6.248 19 C 0.066 3.934 20 C -0.235 4.235 21 C -0.106 4.106 22 C -0.187 4.187 23 C -0.105 4.105 24 C -0.195 4.195 25 C -0.154 4.154 26 C -0.134 4.134 27 C -0.125 4.125 28 H 0.233 0.767 29 H 0.144 0.856 30 H -0.218 1.218 31 H -0.229 1.229 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.258 0.742 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.146 0.854 46 H 0.134 0.866 47 H 0.106 0.894 48 H 0.150 0.850 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.437 -4.053 -2.360 8.793 hybrid contribution -1.212 -0.211 -0.534 1.341 sum 6.225 -4.264 -2.895 8.082 Atomic orbital electron populations 1.86547 1.18819 1.80386 1.50048 1.25274 0.83235 1.11947 0.98872 0.94119 0.90216 0.71955 0.75987 1.20336 0.99716 0.95257 0.97332 1.21162 0.98269 1.00068 0.94621 1.21226 1.00185 0.94117 0.97361 1.19603 0.97715 0.94467 0.95434 1.20777 0.98910 1.04520 0.89520 1.21114 0.86958 0.77784 0.84157 1.90743 1.30169 1.42161 1.83249 1.45875 1.24777 1.54948 1.10373 1.22345 0.93773 0.97396 0.85149 0.89253 1.23578 1.01913 0.97865 0.94941 1.22346 1.00377 0.98277 0.91552 0.88779 1.22973 0.99496 0.90577 0.87493 1.86060 1.60170 1.54302 1.24277 1.19254 0.92467 0.95566 0.86065 1.21513 0.99728 1.01649 1.00618 1.21334 0.98531 0.98207 0.92488 1.21432 0.99760 0.96572 1.00930 1.21287 0.94737 0.98553 0.95970 1.20706 1.04094 1.00636 0.94016 1.23282 1.04969 0.95711 0.91432 1.21245 0.97223 1.00741 0.94185 1.21089 0.99231 0.94308 0.97913 0.76711 0.85611 1.21795 1.22917 0.84300 0.84179 0.84820 0.85051 0.74241 0.92779 0.88431 0.90473 0.90596 0.83751 0.83674 0.84096 0.83710 0.85362 0.86594 0.89446 0.84966 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.51 12.77 -148.98 -1.90 -5.42 16 2 C -0.08 -0.22 2.82 71.24 0.20 -0.01 16 3 Si 0.77 0.54 29.79 68.60 2.04 2.58 16 4 C -0.13 -0.46 5.39 -19.87 -0.11 -0.57 16 5 C -0.12 -0.26 8.67 22.27 0.19 -0.07 16 6 C -0.11 -0.17 9.70 22.27 0.22 0.05 16 7 C -0.07 -0.09 4.37 -19.87 -0.09 -0.17 16 8 C -0.10 0.54 5.83 29.10 0.17 0.71 16 9 C 0.51 0.49 7.82 87.65 0.69 1.17 16 10 O -0.58 -7.14 15.65 -3.03 -0.05 -7.18 16 11 N -0.71 3.58 5.36 -440.04 -2.36 1.22 16 12 C 0.12 -0.28 4.21 45.52 0.19 -0.08 16 13 H 0.09 0.33 7.50 -2.38 -0.02 0.31 16 14 C -0.14 0.25 7.45 31.18 0.23 0.48 16 15 C -0.11 0.36 4.01 -10.21 -0.04 0.32 16 16 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 17 C 0.07 -0.20 4.58 71.98 0.33 0.13 16 18 O -0.33 -1.56 10.14 -92.45 -0.94 -2.49 16 19 C 0.11 0.54 6.69 22.51 0.15 0.69 16 20 C -0.22 -0.26 9.04 22.37 0.20 -0.06 16 21 C -0.09 -0.01 10.04 22.26 0.22 0.22 16 22 C -0.17 -0.10 10.04 22.28 0.22 0.12 16 23 C -0.09 -0.17 10.04 22.26 0.22 0.06 16 24 C -0.18 -0.84 9.99 22.37 0.22 -0.62 16 25 C -0.12 0.89 7.39 31.12 0.23 1.12 16 26 C -0.12 -0.34 9.70 22.27 0.22 -0.12 16 27 C -0.11 -0.49 9.61 22.27 0.21 -0.28 16 28 H 0.38 0.73 8.70 -74.06 -0.64 0.09 16 29 H 0.13 0.05 7.96 -2.39 -0.02 0.03 16 30 H -0.29 -1.62 7.11 99.48 0.71 -0.92 16 31 H -0.30 -2.36 7.11 99.48 0.71 -1.66 16 32 H 0.14 -0.22 4.88 -2.91 -0.01 -0.23 16 33 H 0.14 -0.36 8.06 -2.91 -0.02 -0.39 16 34 H 0.13 -1.49 8.09 -2.39 -0.02 -1.50 16 35 H 0.13 -1.41 8.09 -2.38 -0.02 -1.43 16 36 H 0.42 -5.24 8.71 -92.71 -0.81 -6.05 16 37 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.10 -0.39 7.91 -2.39 -0.02 -0.41 16 39 H 0.08 -0.44 7.36 -2.39 -0.02 -0.46 16 40 H 0.08 -0.39 7.68 -2.39 -0.02 -0.41 16 41 H 0.14 -0.52 6.30 -2.91 -0.02 -0.54 16 42 H 0.15 -0.69 8.06 -2.91 -0.02 -0.71 16 43 H 0.14 -0.49 8.06 -2.91 -0.02 -0.52 16 44 H 0.15 -0.35 8.06 -2.91 -0.02 -0.37 16 45 H 0.13 0.48 8.06 -2.91 -0.02 0.46 16 46 H 0.12 -1.44 8.07 -2.39 -0.02 -1.46 16 47 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 48 H 0.13 -0.04 8.06 -2.91 -0.02 -0.07 16 49 H 0.12 0.49 8.06 -2.91 -0.02 0.47 16 Total: 0.00 -24.85 407.40 0.25 -24.60 By element: Atomic # 1 Polarization: -15.96 SS G_CDS: -0.44 Total: -16.40 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 3.89 Total: 3.09 kcal Atomic # 7 Polarization: 3.58 SS G_CDS: -2.36 Total: 1.22 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -2.89 Total: -15.10 kcal Atomic # 14 Polarization: 0.54 SS G_CDS: 2.04 Total: 2.58 kcal Total: -24.85 0.25 -24.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_12335836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.770 kcal (2) G-P(sol) polarization free energy of solvation -24.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds