Wall clock time and date at job start Tue Mar 9 2021 13:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86299 * 109.47272 * 2 1 4 4 C 1.50703 * 109.46950 * 239.99972 * 2 1 3 5 5 C 1.37943 * 119.92600 * 300.02356 * 4 2 1 6 6 C 1.39587 * 119.87607 * 179.97438 * 5 4 2 7 7 C 1.47848 * 120.13730 * 180.02562 * 6 5 4 8 8 O 1.21547 * 120.00165 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99909 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00196 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.84824 * 25.33617 * 10 9 7 12 12 C 1.53781 * 113.61484 * 156.52804 * 10 9 7 13 13 C 1.53779 * 87.08198 * 139.98182 * 12 10 9 14 14 H 1.08994 * 113.61263 * 89.11218 * 13 12 10 15 15 C 1.52988 * 113.61556 * 219.93662 * 13 12 10 16 16 O 1.42902 * 109.47241 * 184.99995 * 15 13 12 17 17 C 1.35898 * 117.00130 * 179.97438 * 16 15 13 18 18 C 1.38735 * 120.05809 * 359.72556 * 17 16 15 19 19 C 1.38139 * 119.94339 * 179.74380 * 18 17 16 20 20 C 1.38267 * 120.05721 * 0.50646 * 19 18 17 21 21 C 1.38259 * 120.11060 * 359.77033 * 20 19 18 22 22 C 1.38142 * 120.05814 * 359.97438 * 21 20 19 23 23 C 1.53776 * 113.61477 * 254.13662 * 10 9 7 24 24 C 1.39545 * 119.72091 * 0.02562 * 6 5 4 25 25 C 1.38062 * 119.84326 * 359.97438 * 24 6 5 26 26 Br 1.89099 * 119.94088 * 180.02562 * 25 24 6 27 27 C 1.38365 * 119.91902 * 119.99996 * 4 2 1 28 28 H 0.96697 * 114.00000 * 59.99574 * 1 2 3 29 29 H 1.08999 * 109.47116 * 120.00471 * 2 1 3 30 30 H 1.48496 * 110.00392 * 298.68103 * 3 2 1 31 31 H 1.48498 * 110.00160 * 60.00448 * 3 2 1 32 32 H 1.08009 * 120.05525 * 359.95092 * 5 4 2 33 33 H 0.97003 * 119.99952 * 359.97438 * 9 7 6 34 34 H 1.08997 * 113.61347 * 254.53005 * 12 10 9 35 35 H 1.08997 * 113.61530 * 25.43292 * 12 10 9 36 36 H 1.09002 * 109.47403 * 304.99433 * 15 13 12 37 37 H 1.08999 * 109.47757 * 65.00282 * 15 13 12 38 38 H 1.07997 * 120.02615 * 359.97438 * 18 17 16 39 39 H 1.08002 * 119.97110 * 180.27381 * 19 18 17 40 40 H 1.08006 * 119.94258 * 179.74581 * 20 19 18 41 41 H 1.08009 * 119.97005 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.03051 * 179.97438 * 22 21 20 43 43 H 1.08999 * 113.61581 * 334.56685 * 23 10 9 44 44 H 1.08999 * 113.61327 * 105.47017 * 23 10 9 45 45 H 1.08003 * 120.07903 * 179.97438 * 24 6 5 46 46 H 1.07997 * 119.86062 * 359.74702 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5967 -2.0310 -1.4475 6 6 2.0620 -2.6878 -2.5879 7 6 1.7065 -4.1029 -2.8265 8 8 1.0072 -4.6966 -2.0291 9 7 2.1578 -4.7346 -3.9282 10 6 1.8050 -6.1367 -4.1650 11 1 0.8752 -6.4275 -3.6763 12 6 1.8782 -6.5489 -5.6447 13 6 2.4868 -7.8766 -5.1634 14 1 1.7440 -8.6443 -4.9471 15 6 3.6264 -8.3850 -6.0485 16 8 4.0464 -9.6722 -5.5917 17 6 5.0582 -10.2693 -6.2747 18 6 5.6312 -9.6321 -7.3658 19 6 6.6631 -10.2389 -8.0551 20 6 7.1180 -11.4849 -7.6650 21 6 6.5449 -12.1246 -6.5815 22 6 5.5162 -11.5198 -5.8856 23 6 2.9650 -7.1146 -3.9140 24 6 2.8643 -2.0032 -3.5017 25 6 3.1921 -0.6817 -3.2730 26 35 4.2784 0.2489 -4.5098 27 6 2.7266 -0.0364 -2.1402 28 1 -0.3933 0.4417 -0.7650 29 1 1.7923 -0.5139 0.8899 30 1 1.5880 2.4586 -1.2242 31 1 1.5616 2.4679 1.2085 32 1 0.9760 -2.5557 -0.7361 33 1 2.7156 -4.2607 -4.5648 34 1 0.9016 -6.6615 -6.1154 35 1 2.5656 -5.9416 -6.2337 36 1 3.2799 -8.4606 -7.0793 37 1 4.4644 -7.6899 -5.9970 38 1 5.2732 -8.6608 -7.6736 39 1 7.1124 -9.7412 -8.9018 40 1 7.9222 -11.9595 -8.2078 41 1 6.9018 -13.0981 -6.2790 42 1 5.0686 -12.0200 -5.0396 43 1 3.9500 -6.6623 -4.0289 44 1 2.8644 -7.6832 -2.9896 45 1 3.2279 -2.5059 -4.3857 46 1 2.9820 0.9987 -1.9678 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_12335870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:46 Heat of formation + Delta-G solvation = -13.868202 kcal Electronic energy + Delta-G solvation = -29536.749811 eV Core-core repulsion = 25212.551253 eV Total energy + Delta-G solvation = -4324.198558 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.061 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.78091 -41.15879 -40.43168 -39.35657 -38.09305 -37.82556 -35.00915 -33.62795 -32.97226 -31.99577 -31.01826 -30.46061 -29.12141 -27.06189 -26.76614 -25.85903 -24.03172 -23.31461 -22.83729 -22.46280 -21.60390 -20.66868 -19.29068 -19.04079 -18.09649 -17.80579 -17.46200 -17.10647 -16.91028 -16.77725 -16.48329 -16.31648 -16.21981 -15.93238 -15.69611 -15.34158 -15.11036 -14.97204 -14.40574 -14.32072 -14.25923 -14.21830 -13.98547 -13.49525 -13.31547 -13.29614 -13.05019 -12.97440 -12.57639 -12.39850 -12.31114 -12.05736 -11.97348 -11.85881 -11.83495 -11.66088 -11.46556 -11.31285 -11.17145 -10.73673 -10.38659 -10.10344 -9.96486 -9.91093 -9.17517 -4.98208 -0.53024 -0.17115 0.38107 0.42680 0.48347 1.19656 1.50082 1.54341 1.88223 1.95152 2.23510 2.44512 2.83878 3.23764 3.30368 3.37199 3.45795 3.49603 3.73108 3.75682 3.80562 3.86613 3.90000 3.95386 3.96907 4.19522 4.22977 4.24400 4.29588 4.31420 4.37111 4.49668 4.53588 4.54972 4.66885 4.70062 4.73291 4.74964 4.79776 4.91840 4.95692 5.01519 5.06605 5.07514 5.16862 5.34317 5.35851 5.47425 5.49076 5.60637 5.85721 6.35166 6.41184 6.46784 7.02029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.084 4.084 3 Si 0.762 3.238 4 C -0.114 4.114 5 C -0.030 4.030 6 C -0.137 4.137 7 C 0.559 3.441 8 O -0.574 6.574 9 N -0.699 5.699 10 C 0.117 3.883 11 H 0.098 0.902 12 C -0.117 4.117 13 C -0.104 4.104 14 H 0.098 0.902 15 C 0.068 3.932 16 O -0.332 6.332 17 C 0.112 3.888 18 C -0.217 4.217 19 C -0.088 4.088 20 C -0.169 4.169 21 C -0.088 4.088 22 C -0.175 4.175 23 C -0.145 4.145 24 C -0.043 4.043 25 C -0.099 4.099 26 Br -0.027 7.027 27 C -0.061 4.061 28 H 0.388 0.612 29 H 0.130 0.870 30 H -0.273 1.273 31 H -0.297 1.297 32 H 0.130 0.870 33 H 0.416 0.584 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.129 0.871 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.164 0.836 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.972 2.665 -5.784 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.193 4.193 3 Si 0.666 3.334 4 C -0.115 4.115 5 C -0.050 4.050 6 C -0.141 4.141 7 C 0.347 3.653 8 O -0.454 6.454 9 N -0.350 5.350 10 C 0.012 3.988 11 H 0.116 0.884 12 C -0.155 4.155 13 C -0.123 4.123 14 H 0.116 0.884 15 C -0.006 4.006 16 O -0.247 6.247 17 C 0.067 3.933 18 C -0.235 4.235 19 C -0.106 4.106 20 C -0.187 4.187 21 C -0.106 4.106 22 C -0.194 4.194 23 C -0.184 4.184 24 C -0.063 4.063 25 C -0.178 4.178 26 Br 0.058 6.942 27 C -0.080 4.080 28 H 0.237 0.763 29 H 0.148 0.852 30 H -0.199 1.199 31 H -0.225 1.225 32 H 0.148 0.852 33 H 0.255 0.745 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.147 0.853 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.181 0.819 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.650 3.040 -5.009 7.480 hybrid contribution -1.293 -0.305 -0.239 1.350 sum 3.357 2.735 -5.248 6.804 Atomic orbital electron populations 1.86613 1.18181 1.80356 1.50240 1.25312 0.83713 1.12118 0.98129 0.94181 0.90227 0.71631 0.77362 1.20262 0.99340 0.94213 0.97698 1.21255 0.94854 0.93582 0.95269 1.19878 1.02805 0.93717 0.97666 1.18403 0.79056 0.86299 0.81497 1.90802 1.39571 1.68248 1.46822 1.45792 1.52625 1.12891 1.23739 1.22519 0.98839 0.79434 0.97975 0.88358 1.23307 1.03164 0.94457 0.94563 1.22325 0.97188 0.96875 0.95905 0.88350 1.22974 0.97088 0.81908 0.98655 1.86057 1.49151 1.34353 1.55122 1.19250 0.88850 0.93149 0.92061 1.21510 1.01252 1.02708 0.98060 1.21325 0.95068 0.95080 0.99114 1.21427 1.02292 0.96321 0.98687 1.21285 0.94377 1.00265 0.94632 1.20704 1.00709 0.94529 1.03453 1.23594 0.99254 0.97177 0.98331 1.21461 0.93954 0.92374 0.98529 1.21735 1.03035 0.95815 0.97259 1.96864 1.65533 1.75324 1.56443 1.21385 0.94478 1.00567 0.91575 0.76272 0.85181 1.19890 1.22496 0.85232 0.74536 0.89013 0.86684 0.90509 0.90551 0.83769 0.83738 0.84143 0.83716 0.85301 0.88522 0.92247 0.81885 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.12 12.76 -148.98 -1.90 -3.02 16 2 C -0.08 0.15 2.82 71.24 0.20 0.35 16 3 Si 0.76 -2.78 29.78 68.60 2.04 -0.74 16 4 C -0.11 0.15 5.38 -19.90 -0.11 0.05 16 5 C -0.03 -0.07 9.15 22.53 0.21 0.13 16 6 C -0.14 -0.10 5.87 -20.09 -0.12 -0.22 16 7 C 0.56 2.31 7.77 86.79 0.67 2.99 16 8 O -0.57 -7.66 15.97 -3.86 -0.06 -7.72 16 9 N -0.70 2.08 5.31 -442.91 -2.35 -0.27 16 10 C 0.12 -0.26 4.21 45.52 0.19 -0.07 16 11 H 0.10 0.27 7.50 -2.39 -0.02 0.25 16 12 C -0.12 0.92 7.39 31.12 0.23 1.15 16 13 C -0.10 0.41 4.00 -10.21 -0.04 0.37 16 14 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 15 C 0.07 -0.22 4.58 71.98 0.33 0.11 16 16 O -0.33 -1.43 10.14 -92.41 -0.94 -2.37 16 17 C 0.11 0.52 6.69 22.51 0.15 0.67 16 18 C -0.22 -0.26 9.04 22.37 0.20 -0.06 16 19 C -0.09 -0.02 10.04 22.25 0.22 0.21 16 20 C -0.17 -0.11 10.04 22.28 0.22 0.11 16 21 C -0.09 -0.16 10.04 22.25 0.22 0.06 16 22 C -0.18 -0.81 9.99 22.37 0.22 -0.59 16 23 C -0.14 0.28 7.45 31.18 0.23 0.51 16 24 C -0.04 0.18 9.28 22.54 0.21 0.39 16 25 C -0.10 0.34 6.22 22.27 0.14 0.48 16 26 Br -0.03 0.10 33.69 -20.37 -0.69 -0.58 16 27 C -0.06 0.21 8.41 22.35 0.19 0.40 16 28 H 0.39 -1.53 8.70 -74.06 -0.64 -2.17 16 29 H 0.13 -0.39 7.96 -2.39 -0.02 -0.41 16 30 H -0.27 0.19 7.11 99.48 0.71 0.90 16 31 H -0.30 -1.28 7.11 99.48 0.71 -0.57 16 32 H 0.13 0.78 7.65 -2.91 -0.02 0.75 16 33 H 0.42 -4.03 6.75 -92.71 -0.63 -4.65 16 34 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 35 H 0.11 -1.43 8.07 -2.39 -0.02 -1.45 16 36 H 0.08 -0.42 7.65 -2.39 -0.02 -0.44 16 37 H 0.08 -0.44 7.39 -2.39 -0.02 -0.46 16 38 H 0.14 -0.52 6.30 -2.91 -0.02 -0.54 16 39 H 0.14 -0.66 8.06 -2.91 -0.02 -0.68 16 40 H 0.14 -0.47 8.06 -2.91 -0.02 -0.50 16 41 H 0.15 -0.35 8.06 -2.91 -0.02 -0.37 16 42 H 0.13 0.46 8.06 -2.91 -0.02 0.43 16 43 H 0.10 -0.36 7.91 -2.39 -0.02 -0.38 16 44 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.16 -1.66 6.41 -2.91 -0.02 -1.67 16 46 H 0.16 -1.04 4.86 -2.91 -0.01 -1.06 16 Total: 0.00 -21.03 404.04 -0.51 -21.54 By element: Atomic # 1 Polarization: -13.68 SS G_CDS: -0.19 Total: -13.88 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 3.58 Total: 7.04 kcal Atomic # 7 Polarization: 2.08 SS G_CDS: -2.35 Total: -0.27 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -2.90 Total: -13.11 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.04 Total: -0.74 kcal Atomic # 35 Polarization: 0.10 SS G_CDS: -0.69 Total: -0.58 kcal Total: -21.03 -0.51 -21.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_12335870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.671 kcal (2) G-P(sol) polarization free energy of solvation -21.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds