Wall clock time and date at job start Tue Mar 9 2021 13:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86297 * 109.47241 * 2 1 4 4 C 1.50699 * 109.46886 * 239.99650 * 2 1 3 5 5 C 1.38394 * 119.82973 * 300.00435 * 4 2 1 6 6 C 1.37895 * 120.16996 * 180.02562 * 5 4 2 7 7 C 1.39831 * 119.82797 * 0.02562 * 6 5 4 8 8 C 1.47208 * 120.17448 * 179.97438 * 7 6 5 9 9 C 1.34804 * 120.00257 * 179.97438 * 8 7 6 10 10 C 1.46434 * 119.99689 * 179.97438 * 9 8 7 11 11 O 1.21698 * 120.00143 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99353 * 179.97438 * 10 9 8 13 13 C 1.46508 * 119.99594 * 180.02562 * 12 10 9 14 14 H 1.09006 * 112.85122 * 336.19708 * 13 12 10 15 15 C 1.53779 * 113.69115 * 107.46541 * 13 12 10 16 16 C 1.53784 * 87.08045 * 139.99342 * 15 13 12 17 17 H 1.08994 * 113.61477 * 89.11454 * 16 15 13 18 18 C 1.52997 * 113.61270 * 220.02125 * 16 15 13 19 19 O 1.42902 * 109.47204 * 272.49576 * 18 16 15 20 20 C 1.35895 * 117.00232 * 180.02562 * 19 18 16 21 21 C 1.38732 * 120.05745 * 359.72162 * 20 19 18 22 22 C 1.38148 * 119.94512 * 179.70375 * 21 20 19 23 23 C 1.38267 * 120.05386 * 0.59673 * 22 21 20 24 24 C 1.38267 * 120.11119 * 359.67986 * 23 22 21 25 25 C 1.38141 * 120.05657 * 0.02562 * 24 23 22 26 26 C 1.53779 * 113.61245 * 205.00346 * 13 12 10 27 27 C 1.39837 * 119.66139 * 0.24930 * 7 6 5 28 28 C 1.37899 * 119.82351 * 359.51515 * 27 7 6 29 29 H 0.96701 * 114.00169 * 59.99747 * 1 2 3 30 30 H 1.08997 * 109.46996 * 119.99988 * 2 1 3 31 31 H 1.48502 * 109.99953 * 298.67891 * 3 2 1 32 32 H 1.48503 * 110.00192 * 59.99831 * 3 2 1 33 33 H 1.08005 * 119.91744 * 359.97274 * 5 4 2 34 34 H 1.08000 * 120.08481 * 179.97438 * 6 5 4 35 35 H 1.08009 * 119.99130 * 359.97438 * 8 7 6 36 36 H 1.07998 * 120.00112 * 359.97438 * 9 8 7 37 37 H 0.96996 * 120.00779 * 0.02562 * 12 10 9 38 38 H 1.09002 * 113.61557 * 25.44454 * 15 13 12 39 39 H 1.09004 * 113.61501 * 254.53874 * 15 13 12 40 40 H 1.08998 * 109.47573 * 32.49481 * 18 16 15 41 41 H 1.09003 * 109.47157 * 152.50001 * 18 16 15 42 42 H 1.08004 * 120.02818 * 0.02562 * 21 20 19 43 43 H 1.08004 * 119.97050 * 180.27608 * 22 21 20 44 44 H 1.08002 * 119.94265 * 179.70375 * 23 22 21 45 45 H 1.08000 * 119.96751 * 180.02562 * 24 23 22 46 46 H 1.07994 * 120.02821 * 179.97438 * 25 24 23 47 47 H 1.08997 * 113.61646 * 105.38794 * 26 13 12 48 48 H 1.09000 * 113.61527 * 334.48065 * 26 13 12 49 49 H 1.07995 * 120.09126 * 179.75041 * 27 7 6 50 50 H 1.07998 * 119.91709 * 180.22898 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5947 -2.0355 -1.4459 6 6 2.0508 -2.6926 -2.5691 7 6 2.8559 -2.0168 -3.4913 8 6 3.3475 -2.7110 -4.6927 9 6 4.1230 -2.0561 -5.5798 10 6 4.6125 -2.7469 -6.7746 11 8 4.3188 -3.9122 -6.9669 12 7 5.3874 -2.0919 -7.6616 13 6 5.8766 -2.7829 -8.8573 14 1 5.9160 -3.8653 -8.7343 15 6 5.1854 -2.3352 -10.1560 16 6 6.5673 -2.4146 -10.8261 17 1 6.7955 -3.3962 -11.2413 18 6 6.8378 -1.2743 -11.8096 19 8 6.3432 -1.6322 -13.1017 20 6 6.5054 -0.7226 -14.0981 21 6 7.1226 0.4920 -13.8366 22 6 7.2918 1.4126 -14.8527 23 6 6.8355 1.1292 -16.1268 24 6 6.2149 -0.0782 -16.3888 25 6 6.0488 -1.0046 -15.3775 26 6 7.1701 -2.1806 -9.4308 27 6 3.1964 -0.6798 -3.2637 28 6 2.7284 -0.0350 -2.1381 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5138 0.8900 31 1 1.5880 2.4585 -1.2243 32 1 1.5615 2.4679 1.2085 33 1 0.9738 -2.5565 -0.7320 34 1 1.7877 -3.7267 -2.7357 35 1 3.0869 -3.7452 -4.8634 36 1 4.3833 -1.0219 -5.4093 37 1 5.6212 -1.1631 -7.5086 38 1 4.7803 -1.3244 -10.1090 39 1 4.4703 -3.0614 -10.5427 40 1 6.3347 -0.3706 -11.4656 41 1 7.9110 -1.0926 -11.8690 42 1 7.4753 0.7156 -12.8405 43 1 7.7763 2.3564 -14.6505 44 1 6.9644 1.8522 -16.9187 45 1 5.8597 -0.2973 -17.3849 46 1 5.5636 -1.9473 -15.5826 47 1 8.0573 -2.7819 -9.2321 48 1 7.3077 -1.1275 -9.1855 49 1 3.8211 -0.1524 -3.9693 50 1 2.9874 0.9987 -1.9627 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_12360594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:55 Heat of formation + Delta-G solvation = -5.701400 kcal Electronic energy + Delta-G solvation = -29764.042671 eV Core-core repulsion = 25496.252496 eV Total energy + Delta-G solvation = -4267.790175 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.166 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.45304 -40.93197 -40.56405 -39.50867 -38.10968 -37.89015 -35.08984 -34.66768 -32.21959 -32.01589 -31.36068 -30.95619 -29.13424 -27.20426 -26.73647 -24.96939 -24.04338 -23.69638 -23.23169 -22.47692 -21.79684 -21.04720 -20.16607 -19.17640 -18.86076 -18.15663 -17.72902 -17.12398 -16.92194 -16.86644 -16.61771 -16.47154 -16.22617 -16.13787 -15.77517 -15.72937 -15.30375 -15.16937 -14.95592 -14.50189 -14.37820 -14.27213 -14.13959 -14.07120 -13.81479 -13.47757 -13.31907 -13.24582 -13.05525 -12.98264 -12.56243 -12.38125 -12.26194 -12.10483 -12.04034 -11.83020 -11.64881 -11.61968 -11.36007 -11.29855 -11.02673 -10.62445 -10.09237 -9.97881 -9.96916 -9.24509 -9.17962 -4.92202 -0.55388 0.37631 0.39684 0.47900 0.87988 1.30839 1.60215 1.96958 2.07610 2.21746 2.31520 2.80890 2.83415 3.38676 3.40757 3.50521 3.56021 3.68722 3.76158 3.77989 3.81792 3.89925 3.94815 3.96645 4.14794 4.21040 4.23561 4.28715 4.29719 4.36285 4.38007 4.46520 4.49377 4.54578 4.57087 4.68445 4.71213 4.74817 4.80685 4.84929 4.97692 4.98310 5.02975 5.07097 5.09276 5.16753 5.23697 5.34075 5.38340 5.47114 5.47602 5.56699 5.60135 5.60159 5.85436 5.90177 6.46174 6.46409 6.55452 7.22185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.089 4.089 3 Si 0.772 3.228 4 C -0.110 4.110 5 C -0.107 4.107 6 C -0.104 4.104 7 C -0.081 4.081 8 C -0.023 4.023 9 C -0.207 4.207 10 C 0.540 3.460 11 O -0.595 6.595 12 N -0.700 5.700 13 C 0.117 3.883 14 H 0.094 0.906 15 C -0.145 4.145 16 C -0.105 4.105 17 H 0.097 0.903 18 C 0.069 3.931 19 O -0.333 6.333 20 C 0.112 3.888 21 C -0.217 4.217 22 C -0.088 4.088 23 C -0.169 4.169 24 C -0.088 4.088 25 C -0.176 4.176 26 C -0.116 4.116 27 C -0.094 4.094 28 C -0.121 4.121 29 H 0.386 0.614 30 H 0.124 0.876 31 H -0.279 1.279 32 H -0.307 1.307 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.167 0.833 37 H 0.420 0.580 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.129 0.871 47 H 0.089 0.911 48 H 0.115 0.885 49 H 0.159 0.841 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 6.762 0.322 8.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.197 4.197 3 Si 0.677 3.323 4 C -0.110 4.110 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.081 4.081 8 C -0.042 4.042 9 C -0.227 4.227 10 C 0.331 3.669 11 O -0.478 6.478 12 N -0.350 5.350 13 C 0.011 3.989 14 H 0.112 0.888 15 C -0.184 4.184 16 C -0.124 4.124 17 H 0.115 0.885 18 C -0.006 4.006 19 O -0.248 6.248 20 C 0.067 3.933 21 C -0.235 4.235 22 C -0.106 4.106 23 C -0.187 4.187 24 C -0.105 4.105 25 C -0.195 4.195 26 C -0.154 4.154 27 C -0.111 4.111 28 C -0.138 4.138 29 H 0.235 0.765 30 H 0.142 0.858 31 H -0.206 1.206 32 H -0.235 1.235 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.184 0.816 37 H 0.258 0.742 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.163 0.837 46 H 0.147 0.853 47 H 0.108 0.892 48 H 0.134 0.866 49 H 0.177 0.823 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.025 6.276 0.724 8.073 hybrid contribution -1.319 -0.220 -0.408 1.398 sum 3.707 6.055 0.316 7.107 Atomic orbital electron populations 1.86579 1.18591 1.80407 1.50203 1.25336 0.83437 1.12173 0.98750 0.94075 0.90190 0.71643 0.76396 1.20548 0.98528 0.94960 0.96974 1.21065 0.99522 0.94329 0.97634 1.21606 0.96393 1.00553 0.93634 1.19119 0.99509 0.94683 0.94800 1.22364 0.91784 0.99151 0.90947 1.23031 1.02835 1.02368 0.94505 1.18835 0.78051 0.85969 0.84028 1.90818 1.59706 1.19087 1.78179 1.45734 1.50907 1.16122 1.22264 1.22422 0.95496 0.97892 0.83067 0.88827 1.23563 0.96791 1.02600 0.95445 1.22312 0.97244 0.99265 0.93603 0.88516 1.22979 0.99656 0.98230 0.79699 1.86057 1.77495 1.42445 1.18773 1.19254 0.96085 0.89217 0.88772 1.21516 1.05794 0.94407 1.01817 1.21332 0.97313 0.99397 0.92526 1.21431 1.01286 0.98076 0.97928 1.21285 0.96916 0.93122 0.99220 1.20709 1.05576 1.02068 0.91125 1.23295 0.96597 1.03614 0.91874 1.21661 0.98770 0.93151 0.97559 1.21189 0.97882 1.00593 0.94179 0.76459 0.85813 1.20552 1.23546 0.85387 0.84756 0.86230 0.81600 0.74209 0.88551 0.92576 0.90548 0.90512 0.83747 0.83684 0.84109 0.83709 0.85328 0.89248 0.86642 0.82348 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.00 12.76 -148.98 -1.90 -2.90 16 2 C -0.09 0.17 2.82 71.24 0.20 0.37 16 3 Si 0.77 -2.96 29.77 68.60 2.04 -0.92 16 4 C -0.11 0.17 5.40 -19.79 -0.11 0.07 16 5 C -0.11 -0.03 9.59 22.23 0.21 0.18 16 6 C -0.10 -0.03 9.80 22.57 0.22 0.19 16 7 C -0.08 0.06 5.87 -20.15 -0.12 -0.06 16 8 C -0.02 -0.02 9.46 23.84 0.23 0.21 16 9 C -0.21 0.43 9.41 23.62 0.22 0.65 16 10 C 0.54 1.94 7.74 86.38 0.67 2.61 16 11 O -0.60 -8.19 15.83 -4.34 -0.07 -8.26 16 12 N -0.70 2.21 5.35 -444.24 -2.38 -0.17 16 13 C 0.12 -0.18 4.24 45.51 0.19 0.01 16 14 H 0.09 0.38 7.46 -2.38 -0.02 0.36 16 15 C -0.15 0.17 7.43 31.12 0.23 0.40 16 16 C -0.11 0.35 4.01 -10.27 -0.04 0.30 16 17 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 18 C 0.07 -0.19 4.58 71.98 0.33 0.14 16 19 O -0.33 -1.59 10.14 -92.37 -0.94 -2.52 16 20 C 0.11 0.55 6.69 22.51 0.15 0.70 16 21 C -0.22 -0.29 9.04 22.37 0.20 -0.09 16 22 C -0.09 -0.02 10.04 22.26 0.22 0.20 16 23 C -0.17 -0.13 10.04 22.28 0.22 0.10 16 24 C -0.09 -0.18 10.04 22.25 0.22 0.05 16 25 C -0.18 -0.86 9.99 22.37 0.22 -0.64 16 26 C -0.12 0.85 7.39 31.12 0.23 1.08 16 27 C -0.09 0.42 9.41 22.58 0.21 0.63 16 28 C -0.12 0.52 8.65 22.23 0.19 0.72 16 29 H 0.39 -1.45 8.70 -74.06 -0.64 -2.09 16 30 H 0.12 -0.38 7.96 -2.39 -0.02 -0.40 16 31 H -0.28 0.18 7.11 99.48 0.71 0.88 16 32 H -0.31 -1.43 7.11 99.48 0.71 -0.73 16 33 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 34 H 0.13 -0.19 8.06 -2.91 -0.02 -0.22 16 35 H 0.12 0.47 7.52 -2.91 -0.02 0.45 16 36 H 0.17 -1.68 6.07 -2.91 -0.02 -1.70 16 37 H 0.42 -4.46 8.71 -92.71 -0.81 -5.27 16 38 H 0.10 -0.31 7.90 -2.39 -0.02 -0.32 16 39 H 0.06 0.18 8.14 -2.39 -0.02 0.17 16 40 H 0.08 -0.41 7.35 -2.39 -0.02 -0.43 16 41 H 0.08 -0.39 7.67 -2.39 -0.02 -0.41 16 42 H 0.14 -0.50 6.30 -2.91 -0.02 -0.52 16 43 H 0.15 -0.67 8.06 -2.91 -0.02 -0.69 16 44 H 0.14 -0.47 8.06 -2.91 -0.02 -0.50 16 45 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 46 H 0.13 0.49 8.06 -2.91 -0.02 0.47 16 47 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 48 H 0.12 -1.39 8.08 -2.39 -0.02 -1.41 16 49 H 0.16 -1.68 6.17 -2.91 -0.02 -1.70 16 50 H 0.15 -1.32 4.85 -2.91 -0.01 -1.33 16 Total: 0.00 -23.95 417.22 0.44 -23.51 By element: Atomic # 1 Polarization: -16.12 SS G_CDS: -0.44 Total: -16.56 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 4.12 Total: 7.82 kcal Atomic # 7 Polarization: 2.21 SS G_CDS: -2.38 Total: -0.17 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -2.91 Total: -13.69 kcal Atomic # 14 Polarization: -2.96 SS G_CDS: 2.04 Total: -0.92 kcal Total: -23.95 0.44 -23.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_12360594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.804 kcal (2) G-P(sol) polarization free energy of solvation -23.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds