Wall clock time and date at job start Tue Mar 9 2021 13:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35658 * 117.00377 * 2 1 4 4 C 1.40139 * 120.14934 * 180.30270 * 3 2 1 5 5 C 1.47538 * 120.19452 * 359.97438 * 4 3 2 6 6 O 1.21586 * 119.99750 * 0.25473 * 5 4 3 7 7 N 1.34778 * 119.99931 * 180.25579 * 5 4 3 8 8 C 1.46493 * 119.99964 * 179.97438 * 7 5 4 9 9 H 1.09002 * 112.84914 * 336.19861 * 8 7 5 10 10 C 1.53783 * 113.61343 * 107.50379 * 8 7 5 11 11 C 1.53786 * 87.08071 * 139.98255 * 10 8 7 12 12 H 1.08995 * 113.69252 * 89.12476 * 11 10 8 13 13 C 1.53001 * 113.61140 * 220.02016 * 11 10 8 14 14 O 1.42899 * 109.47019 * 272.49616 * 13 11 10 15 15 C 1.35902 * 117.00074 * 180.02562 * 14 13 11 16 16 C 1.38732 * 120.05514 * 359.72710 * 15 14 13 17 17 C 1.38145 * 119.94247 * 179.74619 * 16 15 14 18 18 C 1.38264 * 120.05446 * 0.50531 * 17 16 15 19 19 C 1.38264 * 120.11573 * 359.76599 * 18 17 16 20 20 C 1.38149 * 120.05192 * 359.97438 * 19 18 17 21 21 C 1.53778 * 113.61576 * 205.00038 * 8 7 5 22 22 C 1.39707 * 119.61320 * 180.25300 * 4 3 2 23 23 C 1.37790 * 119.90592 * 359.44148 * 22 4 3 24 24 C 1.50703 * 119.84641 * 180.30526 * 23 22 4 25 25 O 1.42902 * 109.47419 * 64.99994 * 24 23 22 26 26 Si 1.86300 * 109.47046 * 184.99865 * 24 23 22 27 27 C 1.38548 * 120.30348 * 0.28096 * 23 22 4 28 28 C 1.38051 * 120.38790 * 359.97438 * 27 23 22 29 29 H 1.09003 * 109.47087 * 300.00276 * 1 2 3 30 30 H 1.09003 * 109.47391 * 60.00333 * 1 2 3 31 31 H 1.08998 * 109.47460 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99743 * 0.02562 * 7 5 4 33 33 H 1.09002 * 113.61512 * 254.52799 * 10 8 7 34 34 H 1.08998 * 113.61463 * 25.42864 * 10 8 7 35 35 H 1.08995 * 109.46979 * 32.49438 * 13 11 10 36 36 H 1.08996 * 109.47029 * 152.49678 * 13 11 10 37 37 H 1.08002 * 120.02758 * 359.97438 * 16 15 14 38 38 H 1.08001 * 119.97138 * 180.27291 * 17 16 15 39 39 H 1.08004 * 119.94353 * 179.75058 * 18 17 16 40 40 H 1.07991 * 119.97764 * 179.97438 * 19 18 17 41 41 H 1.08002 * 120.02761 * 179.97438 * 20 19 18 42 42 H 1.09006 * 113.61542 * 334.56941 * 21 8 7 43 43 H 1.09004 * 113.61861 * 105.46661 * 21 8 7 44 44 H 1.08002 * 120.04882 * 179.72425 * 22 4 3 45 45 H 1.08994 * 109.47132 * 304.99528 * 24 23 22 46 46 H 0.96695 * 113.99916 * 60.00020 * 25 24 23 47 47 H 1.48493 * 110.00151 * 179.97438 * 26 24 23 48 48 H 1.48505 * 110.00056 * 301.31996 * 26 24 23 49 49 H 1.08000 * 119.80164 * 180.02562 * 27 23 22 50 50 H 1.08001 * 119.95682 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4441 1.2856 -0.0064 5 6 4.2550 0.0530 -0.0126 6 8 3.7094 -1.0335 -0.0169 7 7 5.6005 0.1316 -0.0135 8 6 6.4056 -1.0923 -0.0191 9 1 5.8708 -1.9526 0.3833 10 6 7.0970 -1.3686 -1.3647 11 6 8.3233 -1.8181 -0.5528 12 1 8.3147 -2.8775 -0.2967 13 6 9.6554 -1.3624 -1.1517 14 8 10.1043 -2.3279 -2.1047 15 6 11.2821 -2.0732 -2.7331 16 6 11.9884 -0.9150 -2.4426 17 6 13.1880 -0.6610 -3.0788 18 6 13.6797 -1.5548 -4.0121 19 6 12.9750 -2.7071 -4.3075 20 6 11.7775 -2.9683 -3.6701 21 6 7.8116 -0.9074 0.5758 22 6 4.0668 2.5362 -0.0010 23 6 3.3038 3.6836 -0.0010 24 6 3.9769 5.0319 -0.0021 25 8 4.6983 5.2033 -1.2237 26 14 2.6888 6.3691 0.1511 27 6 1.9207 3.6033 -0.0006 28 6 1.2925 2.3740 -0.0006 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 6.0357 0.9985 -0.0098 33 1 6.6336 -2.1725 -1.9368 34 1 7.2713 -0.4713 -1.9584 35 1 9.5215 -0.3998 -1.6452 36 1 10.3958 -1.2639 -0.3580 37 1 11.6025 -0.2143 -1.7169 38 1 13.7404 0.2383 -2.8497 39 1 14.6158 -1.3525 -4.5114 40 1 13.3608 -3.4035 -5.0372 41 1 11.2271 -3.8683 -3.9015 42 1 8.1814 0.1160 0.5126 43 1 7.9251 -1.3388 1.5704 44 1 5.1447 2.6036 -0.0013 45 1 4.6671 5.0942 0.8392 46 1 4.1459 5.1595 -2.0161 47 1 3.3398 7.7037 0.1519 48 1 1.7230 6.2752 -0.9730 49 1 1.3305 4.5078 -0.0010 50 1 0.2139 2.3195 -0.0007 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_12496546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:02 Heat of formation + Delta-G solvation = -50.874169 kcal Electronic energy + Delta-G solvation = -32321.167493 eV Core-core repulsion = 27860.962428 eV Total energy + Delta-G solvation = -4460.205065 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.86680 -41.25434 -40.57278 -39.29627 -39.21476 -38.07720 -37.23026 -34.80105 -32.62093 -32.00737 -31.84167 -31.00644 -29.12237 -28.48351 -26.75984 -26.16560 -25.65675 -24.17181 -23.40565 -22.84388 -22.11749 -21.57417 -20.68691 -19.49986 -19.14368 -18.41850 -18.19542 -17.64625 -17.14085 -16.94418 -16.88564 -16.81915 -16.49827 -16.18755 -16.11249 -15.92809 -15.83482 -15.67474 -15.30558 -14.85445 -14.62604 -14.53209 -14.36697 -14.22955 -14.09143 -13.59493 -13.50352 -13.45263 -13.24803 -13.15647 -12.94666 -12.57216 -12.44739 -12.38186 -12.21195 -12.05202 -12.04578 -11.84181 -11.67466 -11.64347 -11.30929 -11.01173 -10.54722 -10.27771 -10.01258 -9.97750 -9.30899 -9.18901 -4.89331 -0.27507 0.20901 0.36711 0.47007 1.33587 1.61243 1.74872 1.98895 2.02338 2.24364 2.27988 2.66140 2.82515 3.38387 3.41715 3.49095 3.56685 3.63933 3.72256 3.74573 3.78368 3.88820 3.95075 3.98172 4.14301 4.22417 4.25703 4.28468 4.29604 4.34830 4.35340 4.40201 4.48370 4.53471 4.62516 4.66109 4.66391 4.69659 4.71685 4.76640 4.78883 4.92193 4.97074 5.01054 5.06196 5.10015 5.21965 5.26899 5.33270 5.46192 5.53372 5.56336 5.59124 5.84530 6.29252 6.45181 6.51117 6.51382 7.20380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.171 3.829 4 C -0.198 4.198 5 C 0.556 3.444 6 O -0.566 6.566 7 N -0.706 5.706 8 C 0.119 3.881 9 H 0.096 0.904 10 C -0.146 4.146 11 C -0.102 4.102 12 H 0.099 0.901 13 C 0.069 3.931 14 O -0.332 6.332 15 C 0.111 3.889 16 C -0.218 4.218 17 C -0.088 4.088 18 C -0.169 4.169 19 C -0.087 4.087 20 C -0.175 4.175 21 C -0.117 4.117 22 C -0.015 4.015 23 C -0.164 4.164 24 C -0.072 4.072 25 O -0.547 6.547 26 Si 0.760 3.240 27 C -0.044 4.044 28 C -0.213 4.213 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.413 0.587 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.129 0.871 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.153 0.847 45 H 0.132 0.868 46 H 0.386 0.614 47 H -0.306 1.306 48 H -0.281 1.281 49 H 0.156 0.844 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 5.899 2.809 6.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.122 3.878 4 C -0.202 4.202 5 C 0.345 3.655 6 O -0.446 6.446 7 N -0.358 5.358 8 C 0.014 3.986 9 H 0.114 0.886 10 C -0.184 4.184 11 C -0.121 4.121 12 H 0.118 0.882 13 C -0.006 4.006 14 O -0.246 6.246 15 C 0.066 3.934 16 C -0.236 4.236 17 C -0.106 4.106 18 C -0.187 4.187 19 C -0.105 4.105 20 C -0.194 4.194 21 C -0.155 4.155 22 C -0.033 4.033 23 C -0.165 4.165 24 C -0.181 4.181 25 O -0.355 6.355 26 Si 0.666 3.334 27 C -0.062 4.062 28 C -0.231 4.231 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.251 0.749 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.147 0.853 42 H 0.131 0.869 43 H 0.110 0.890 44 H 0.170 0.830 45 H 0.150 0.850 46 H 0.235 0.765 47 H -0.234 1.234 48 H -0.207 1.207 49 H 0.173 0.827 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.863 5.493 2.847 6.247 hybrid contribution 0.121 -0.035 -1.274 1.280 sum -0.742 5.458 1.574 5.728 Atomic orbital electron populations 1.23445 0.76540 1.05460 1.02856 1.86337 1.23199 1.26466 1.86546 1.19439 0.91400 0.85535 0.91389 1.19436 0.91146 0.94061 1.15544 1.18363 0.82835 0.88618 0.75656 1.90809 1.72543 1.30432 1.50798 1.45774 1.05016 1.10179 1.74839 1.22442 0.90621 0.88182 0.97361 0.88579 1.23562 0.96057 1.01839 0.96976 1.22294 0.91570 1.01285 0.96986 0.88234 1.22966 0.95830 0.91188 0.90570 1.86057 1.35327 1.48747 1.54510 1.19268 0.85966 0.94686 0.93475 1.21513 0.98326 0.98304 1.05474 1.21325 0.94785 0.99660 0.94818 1.21430 1.01759 0.95310 1.00192 1.21291 0.93303 0.97532 0.98388 1.20708 0.98615 1.00848 0.99190 1.23303 0.92225 1.01470 0.98470 1.21123 1.00779 0.89061 0.92358 1.20167 0.93735 0.95909 1.06649 1.25094 1.04542 0.98558 0.89912 1.86578 1.38431 1.94248 1.16210 0.94154 0.76772 0.74154 0.88297 1.21316 0.93948 0.97908 0.92999 1.21460 1.01732 0.90921 1.09004 0.90595 0.91056 0.87494 0.74906 0.92430 0.88871 0.90768 0.90434 0.83884 0.83735 0.84068 0.83623 0.85263 0.86938 0.88991 0.82998 0.84999 0.76474 1.23398 1.20731 0.82717 0.82131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.77 8.57 -68.82 -0.59 -3.36 16 3 C 0.17 0.91 6.70 22.84 0.15 1.07 16 4 C -0.20 -0.98 5.89 -20.01 -0.12 -1.10 16 5 C 0.56 4.95 7.76 86.70 0.67 5.62 16 6 O -0.57 -10.22 14.76 16.93 0.25 -9.97 16 7 N -0.71 -0.87 5.31 -443.21 -2.35 -3.22 16 8 C 0.12 0.15 4.24 45.52 0.19 0.34 16 9 H 0.10 0.61 7.46 -2.39 -0.02 0.59 16 10 C -0.15 -0.17 7.43 31.12 0.23 0.06 16 11 C -0.10 0.16 4.01 -10.27 -0.04 0.12 16 12 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 13 C 0.07 -0.07 4.58 71.98 0.33 0.26 16 14 O -0.33 -1.99 10.14 -92.44 -0.94 -2.92 16 15 C 0.11 0.68 6.69 22.51 0.15 0.83 16 16 C -0.22 -0.58 9.04 22.37 0.20 -0.38 16 17 C -0.09 -0.12 10.04 22.25 0.22 0.10 16 18 C -0.17 -0.28 10.04 22.28 0.22 -0.05 16 19 C -0.09 -0.24 10.04 22.25 0.22 -0.02 16 20 C -0.17 -1.01 9.99 22.37 0.22 -0.78 16 21 C -0.12 0.59 7.39 31.12 0.23 0.82 16 22 C -0.01 0.02 9.16 22.52 0.21 0.23 16 23 C -0.16 0.57 5.35 -19.90 -0.11 0.47 16 24 C -0.07 0.37 2.79 71.24 0.20 0.56 16 25 O -0.55 1.04 12.83 -148.98 -1.91 -0.88 16 26 Si 0.76 -4.13 29.87 68.60 2.05 -2.08 16 27 C -0.04 0.18 8.65 22.30 0.19 0.38 16 28 C -0.21 0.30 9.03 22.34 0.20 0.50 16 29 H 0.08 -0.37 7.66 -2.39 -0.02 -0.39 16 30 H 0.07 -0.31 7.66 -2.39 -0.02 -0.32 16 31 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.41 -2.13 6.76 -92.71 -0.63 -2.75 16 33 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.09 -0.03 7.90 -2.39 -0.02 -0.04 16 35 H 0.07 -0.24 7.35 -2.39 -0.02 -0.26 16 36 H 0.08 -0.28 7.67 -2.39 -0.02 -0.30 16 37 H 0.14 -0.26 6.30 -2.91 -0.02 -0.28 16 38 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 39 H 0.14 -0.36 8.06 -2.91 -0.02 -0.39 16 40 H 0.15 -0.24 8.06 -2.92 -0.02 -0.27 16 41 H 0.13 0.59 8.06 -2.91 -0.02 0.57 16 42 H 0.11 -1.05 8.08 -2.38 -0.02 -1.07 16 43 H 0.09 -0.55 8.14 -2.38 -0.02 -0.56 16 44 H 0.15 -0.93 6.40 -2.91 -0.02 -0.94 16 45 H 0.13 -0.99 7.96 -2.39 -0.02 -1.01 16 46 H 0.39 -2.57 8.70 -74.06 -0.64 -3.22 16 47 H -0.31 -0.96 7.11 99.48 0.71 -0.25 16 48 H -0.28 0.54 7.00 99.48 0.70 1.23 16 49 H 0.16 -1.37 4.81 -2.91 -0.01 -1.38 16 50 H 0.16 -1.02 6.30 -2.91 -0.02 -1.04 16 Total: 0.00 -25.83 410.02 0.96 -24.87 By element: Atomic # 1 Polarization: -12.30 SS G_CDS: -0.26 Total: -12.56 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 4.70 Total: 10.12 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: -2.35 Total: -3.22 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -3.19 Total: -17.13 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: 2.05 Total: -2.08 kcal Total: -25.83 0.96 -24.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_12496546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.006 kcal (2) G-P(sol) polarization free energy of solvation -25.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds