Wall clock time and date at job start Tue Mar 9 2021 13:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38978 * 119.95618 * 2 1 4 4 O 1.35713 * 119.90923 * 359.97438 * 3 2 1 5 5 C 1.39007 * 120.17914 * 179.97438 * 3 2 1 6 6 C 1.50699 * 119.95809 * 179.97438 * 5 3 2 7 7 O 1.42898 * 109.46964 * 285.00109 * 6 5 3 8 8 Si 1.86301 * 109.47146 * 165.00027 * 6 5 3 9 9 C 1.37692 * 120.08560 * 0.27873 * 5 3 2 10 10 C 1.39743 * 119.90910 * 359.49069 * 9 5 3 11 11 C 1.47609 * 120.08866 * 180.23167 * 10 9 5 12 12 O 1.21589 * 119.99690 * 0.24966 * 11 10 9 13 13 N 1.34774 * 120.00154 * 180.25877 * 11 10 9 14 14 C 1.46509 * 119.99792 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.84592 * 25.32923 * 14 13 11 16 16 C 1.53777 * 113.61088 * 156.52495 * 14 13 11 17 17 C 1.53784 * 87.08042 * 139.97980 * 16 14 13 18 18 H 1.09000 * 113.61453 * 89.11244 * 17 16 14 19 19 C 1.52994 * 113.61565 * 219.93580 * 17 16 14 20 20 O 1.42901 * 109.47130 * 184.99724 * 19 17 16 21 21 C 1.35904 * 116.99845 * 179.97438 * 20 19 17 22 22 C 1.38727 * 120.05653 * 359.72877 * 21 20 19 23 23 C 1.38146 * 119.93915 * 179.74324 * 22 21 20 24 24 C 1.38258 * 120.06049 * 0.50493 * 23 22 21 25 25 C 1.38273 * 120.11097 * 359.77220 * 24 23 22 26 26 C 1.38143 * 120.05280 * 359.97438 * 25 24 23 27 27 C 1.53773 * 113.61027 * 254.13287 * 14 13 11 28 28 C 1.37718 * 119.95602 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46529 * 90.00127 * 1 2 3 30 30 H 1.09000 * 109.47220 * 210.00160 * 1 2 3 31 31 H 1.09000 * 109.47082 * 330.00267 * 1 2 3 32 32 H 0.96703 * 113.99939 * 269.98049 * 4 3 2 33 33 H 1.09002 * 109.46959 * 45.00080 * 6 5 3 34 34 H 0.96698 * 113.99898 * 299.99550 * 7 6 5 35 35 H 1.48504 * 110.00019 * 58.68329 * 8 6 5 36 36 H 1.48503 * 110.00152 * 180.02562 * 8 6 5 37 37 H 1.07995 * 120.04012 * 179.72682 * 9 5 3 38 38 H 0.96995 * 120.00167 * 359.97438 * 13 11 10 39 39 H 1.09002 * 113.61692 * 254.52392 * 16 14 13 40 40 H 1.09000 * 113.62002 * 25.34911 * 16 14 13 41 41 H 1.09005 * 109.47049 * 304.99622 * 19 17 16 42 42 H 1.09003 * 109.47563 * 64.99577 * 19 17 16 43 43 H 1.07995 * 120.02904 * 359.97438 * 22 21 20 44 44 H 1.08004 * 119.96762 * 180.23434 * 23 22 21 45 45 H 1.08001 * 119.95058 * 179.74199 * 24 23 22 46 46 H 1.07994 * 119.97148 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.02476 * 179.97438 * 26 25 24 48 48 H 1.08996 * 113.62034 * 334.56728 * 27 14 13 49 49 H 1.09000 * 113.61449 * 105.47304 * 27 14 13 50 50 H 1.08002 * 120.04754 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5911 1.2095 0.0005 6 6 4.3385 2.5181 0.0000 7 8 4.2725 3.1037 -1.3018 8 14 6.1196 2.2161 0.4554 9 6 4.2860 0.0208 -0.0047 10 6 3.5919 -1.1921 0.0002 11 6 4.3328 -2.4687 -0.0003 12 8 5.5487 -2.4659 -0.0003 13 7 3.6617 -3.6374 -0.0008 14 6 4.3972 -4.9045 -0.0007 15 1 5.3946 -4.8148 0.4295 16 6 3.5883 -6.0861 0.5599 17 6 4.2046 -6.9384 -0.5621 18 1 5.1499 -7.4057 -0.2864 19 6 3.2188 -7.9213 -1.1969 20 8 3.9076 -8.7436 -2.1411 21 6 3.1712 -9.6778 -2.7984 22 6 1.8149 -9.8042 -2.5359 23 6 1.0676 -10.7510 -3.2093 24 6 1.6723 -11.5792 -4.1366 25 6 3.0251 -11.4591 -4.3959 26 6 3.7758 -10.5104 -3.7290 27 6 4.3739 -5.6303 -1.3562 28 6 2.1947 -1.1932 0.0005 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.3228 2.7179 -0.8841 33 1 3.8875 3.1945 0.7260 34 1 4.6565 2.5555 -1.9997 35 1 6.7371 1.2704 -0.5087 36 1 6.8675 3.4991 0.4590 37 1 5.3659 0.0259 -0.0088 38 1 2.6917 -3.6397 -0.0006 39 1 3.8971 -6.3914 1.5598 40 1 2.5095 -5.9584 0.4707 41 1 2.7803 -8.5484 -0.4206 42 1 2.4297 -7.3672 -1.7052 43 1 1.3429 -9.1605 -1.8084 44 1 0.0108 -10.8472 -3.0080 45 1 1.0872 -12.3216 -4.6590 46 1 3.4953 -12.1075 -5.1204 47 1 4.8325 -10.4172 -3.9316 48 1 3.5103 -5.3784 -1.9717 49 1 5.3158 -5.5681 -1.9011 50 1 1.6548 -2.1286 0.0014 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_13287732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:02 Heat of formation + Delta-G solvation = -66.664171 kcal Electronic energy + Delta-G solvation = -32076.912984 eV Core-core repulsion = 27616.023213 eV Total energy + Delta-G solvation = -4460.889771 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.83492 -41.24338 -40.68495 -39.48808 -38.10338 -37.98591 -37.48724 -34.90187 -33.98014 -32.08612 -31.81275 -30.96237 -29.05455 -27.98816 -26.92707 -26.74749 -25.42488 -23.95212 -23.30444 -22.50410 -22.01195 -21.59219 -20.63608 -19.60120 -19.20916 -18.69729 -18.17115 -17.77310 -17.12583 -16.92768 -16.84919 -16.58074 -16.50038 -16.20790 -16.09080 -15.86059 -15.77506 -15.41127 -15.22355 -14.76895 -14.41480 -14.36880 -14.28519 -14.09682 -14.05486 -13.86785 -13.47957 -13.32685 -13.30583 -12.99338 -12.90442 -12.76232 -12.57549 -12.48961 -12.37580 -12.03883 -11.93156 -11.83717 -11.66090 -11.63672 -11.30616 -11.07100 -10.65835 -10.20280 -9.98229 -9.96761 -9.65400 -9.17742 -5.02654 -0.41094 0.06036 0.37774 0.48059 1.19168 1.49655 1.57748 1.82364 1.97399 2.25248 2.53378 2.83558 3.13238 3.31918 3.38452 3.46728 3.50201 3.57340 3.69058 3.75229 3.78876 3.89998 3.96844 4.01379 4.16732 4.23402 4.26283 4.29864 4.36327 4.39781 4.48102 4.49591 4.54904 4.63491 4.68177 4.70582 4.72360 4.76455 4.80908 4.82223 4.97409 5.03099 5.04047 5.07171 5.07566 5.19647 5.21733 5.32725 5.34135 5.47183 5.50803 5.59898 5.60300 5.85531 6.37828 6.42986 6.46941 6.70105 7.09864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C 0.157 3.843 4 O -0.496 6.496 5 C -0.152 4.152 6 C -0.061 4.061 7 O -0.539 6.539 8 Si 0.743 3.257 9 C -0.066 4.066 10 C -0.151 4.151 11 C 0.559 3.441 12 O -0.580 6.580 13 N -0.699 5.699 14 C 0.117 3.883 15 H 0.098 0.902 16 C -0.116 4.116 17 C -0.104 4.104 18 H 0.097 0.903 19 C 0.068 3.932 20 O -0.333 6.333 21 C 0.112 3.888 22 C -0.216 4.216 23 C -0.088 4.088 24 C -0.169 4.169 25 C -0.088 4.088 26 C -0.176 4.176 27 C -0.146 4.146 28 C -0.053 4.053 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.412 0.588 33 H 0.127 0.873 34 H 0.385 0.615 35 H -0.290 1.290 36 H -0.290 1.290 37 H 0.131 0.869 38 H 0.417 0.583 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.141 0.859 46 H 0.145 0.855 47 H 0.129 0.871 48 H 0.096 0.904 49 H 0.056 0.944 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 -3.286 1.163 9.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C 0.112 3.888 4 O -0.310 6.310 5 C -0.153 4.153 6 C -0.171 4.171 7 O -0.347 6.347 8 Si 0.649 3.351 9 C -0.085 4.085 10 C -0.154 4.154 11 C 0.347 3.653 12 O -0.461 6.461 13 N -0.350 5.350 14 C 0.012 3.988 15 H 0.116 0.884 16 C -0.153 4.153 17 C -0.123 4.123 18 H 0.116 0.884 19 C -0.006 4.006 20 O -0.247 6.247 21 C 0.067 3.933 22 C -0.235 4.235 23 C -0.106 4.106 24 C -0.187 4.187 25 C -0.106 4.106 26 C -0.194 4.194 27 C -0.185 4.185 28 C -0.071 4.071 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.272 0.728 33 H 0.145 0.855 34 H 0.234 0.766 35 H -0.217 1.217 36 H -0.218 1.218 37 H 0.148 0.852 38 H 0.256 0.744 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.147 0.853 48 H 0.114 0.886 49 H 0.075 0.925 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.918 -2.753 1.849 7.672 hybrid contribution -0.124 0.167 -1.770 1.782 sum -7.041 -2.586 0.079 7.502 Atomic orbital electron populations 1.20774 0.88167 1.04308 1.03600 1.20456 0.98369 0.91679 1.01487 1.18447 0.88622 0.85969 0.95785 1.84627 1.75449 1.35681 1.35237 1.20487 0.94211 0.95317 1.05315 1.24826 1.09949 0.94024 0.88304 1.86575 1.82911 1.48388 1.16851 0.93941 0.73413 0.77560 0.90168 1.21119 1.00387 0.91072 0.95949 1.19805 0.94437 0.92521 1.08659 1.18446 0.86795 0.84730 0.75300 1.90794 1.15420 1.88158 1.51731 1.45756 1.10895 1.04477 1.73901 1.22499 0.97359 0.81442 0.97474 0.88414 1.23297 1.01472 0.91970 0.98604 1.22332 0.99884 0.93076 0.97030 0.88425 1.22983 0.95098 0.91896 0.90650 1.86061 1.38609 1.46022 1.54025 1.19252 0.90881 0.90026 0.93166 1.21513 0.92943 1.03808 1.05230 1.21327 1.00823 0.93798 0.94618 1.21427 0.95286 1.01578 1.00454 1.21285 0.94340 0.96670 0.98295 1.20703 1.01254 0.98245 0.99233 1.23599 1.02868 0.95057 0.96947 1.21374 0.91509 0.99124 0.95098 0.89832 0.89424 0.91084 0.72792 0.85512 0.76564 1.21715 1.21767 0.85198 0.74449 0.88976 0.86602 0.90450 0.90550 0.83696 0.83697 0.84154 0.83756 0.85350 0.88583 0.92480 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.84 9.78 71.24 0.70 1.53 16 2 C -0.12 0.40 5.89 -19.81 -0.12 0.29 16 3 C 0.16 -0.04 6.66 22.63 0.15 0.12 16 4 O -0.50 0.58 11.84 -90.35 -1.07 -0.49 16 5 C -0.15 -0.22 5.26 -19.81 -0.10 -0.32 16 6 C -0.06 -0.08 2.37 71.24 0.17 0.08 16 7 O -0.54 -1.19 12.88 -148.98 -1.92 -3.11 16 8 Si 0.74 1.95 30.26 68.60 2.08 4.03 16 9 C -0.07 -0.24 8.20 22.50 0.18 -0.05 16 10 C -0.15 -0.22 5.87 -20.08 -0.12 -0.33 16 11 C 0.56 2.48 7.76 86.72 0.67 3.15 16 12 O -0.58 -7.93 15.96 -4.00 -0.06 -7.99 16 13 N -0.70 2.23 5.31 -443.12 -2.35 -0.12 16 14 C 0.12 -0.28 4.21 45.51 0.19 -0.08 16 15 H 0.10 0.26 7.50 -2.39 -0.02 0.24 16 16 C -0.12 0.96 7.39 31.12 0.23 1.19 16 17 C -0.10 0.43 4.01 -10.21 -0.04 0.39 16 18 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 19 C 0.07 -0.24 4.58 71.98 0.33 0.09 16 20 O -0.33 -1.38 10.14 -92.47 -0.94 -2.31 16 21 C 0.11 0.50 6.69 22.51 0.15 0.65 16 22 C -0.22 -0.19 9.04 22.36 0.20 0.01 16 23 C -0.09 0.01 10.04 22.25 0.22 0.23 16 24 C -0.17 -0.09 10.04 22.28 0.22 0.14 16 25 C -0.09 -0.16 10.04 22.26 0.22 0.07 16 26 C -0.18 -0.80 9.99 22.37 0.22 -0.58 16 27 C -0.15 0.28 7.45 31.18 0.23 0.51 16 28 C -0.05 0.24 9.18 22.50 0.21 0.45 16 29 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H 0.09 -0.91 8.08 -2.39 -0.02 -0.93 16 31 H 0.07 -0.38 7.52 -2.39 -0.02 -0.39 16 32 H 0.41 -3.13 9.06 -74.06 -0.67 -3.80 16 33 H 0.13 0.11 7.82 -2.39 -0.02 0.09 16 34 H 0.39 -1.07 8.70 -74.06 -0.64 -1.72 16 35 H -0.29 -2.40 6.68 99.48 0.66 -1.73 16 36 H -0.29 -2.53 7.11 99.48 0.71 -1.83 16 37 H 0.13 0.80 4.44 -2.91 -0.01 0.79 16 38 H 0.42 -4.33 6.73 -92.71 -0.62 -4.96 16 39 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 40 H 0.12 -1.52 8.07 -2.39 -0.02 -1.54 16 41 H 0.08 -0.45 7.65 -2.38 -0.02 -0.47 16 42 H 0.08 -0.47 7.39 -2.39 -0.02 -0.48 16 43 H 0.15 -0.58 6.30 -2.91 -0.02 -0.60 16 44 H 0.15 -0.71 8.06 -2.91 -0.02 -0.73 16 45 H 0.14 -0.49 8.06 -2.91 -0.02 -0.52 16 46 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 47 H 0.13 0.45 8.06 -2.91 -0.02 0.43 16 48 H 0.10 -0.37 7.91 -2.39 -0.02 -0.39 16 49 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 50 H 0.16 -1.99 6.39 -2.91 -0.02 -2.01 16 Total: 0.00 -23.83 412.99 -1.27 -25.10 By element: Atomic # 1 Polarization: -21.70 SS G_CDS: -0.94 Total: -22.64 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 3.93 Total: 7.54 kcal Atomic # 7 Polarization: 2.23 SS G_CDS: -2.35 Total: -0.12 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -3.99 Total: -13.91 kcal Atomic # 14 Polarization: 1.95 SS G_CDS: 2.08 Total: 4.03 kcal Total: -23.83 -1.27 -25.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_13287732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.562 kcal (2) G-P(sol) polarization free energy of solvation -23.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds