Wall clock time and date at job start Tue Mar 9 2021 13:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.38054 * 119.80414 * 299.73528 * 4 2 1 6 6 C 1.38710 * 120.08179 * 179.72633 * 5 4 2 7 7 O 1.35652 * 120.15315 * 180.26770 * 6 5 4 8 8 C 1.40141 * 119.70184 * 0.51537 * 6 5 4 9 9 C 1.47526 * 120.19501 * 179.73154 * 8 6 5 10 10 O 1.21592 * 120.00301 * 0.02562 * 9 8 6 11 11 N 1.34784 * 120.00325 * 180.02562 * 9 8 6 12 12 C 1.46494 * 120.00265 * 179.97438 * 11 9 8 13 13 H 1.09004 * 112.85247 * 336.19731 * 12 11 9 14 14 C 1.53782 * 113.61289 * 107.50308 * 12 11 9 15 15 C 1.53783 * 87.08236 * 139.98302 * 14 12 11 16 16 H 1.08998 * 113.61748 * 89.11251 * 15 14 12 17 17 C 1.53003 * 113.61104 * 220.02026 * 15 14 12 18 18 O 1.42901 * 109.46733 * 272.48956 * 17 15 14 19 19 C 1.35906 * 116.99572 * 180.02562 * 18 17 15 20 20 C 1.38732 * 120.05681 * 359.72812 * 19 18 17 21 21 C 1.38146 * 119.94143 * 179.74100 * 20 19 18 22 22 C 1.38266 * 120.05608 * 0.51404 * 21 20 19 23 23 C 1.38269 * 120.11132 * 359.76481 * 22 21 20 24 24 C 1.38145 * 120.05639 * 359.97438 * 23 22 21 25 25 C 1.53781 * 113.61608 * 205.00035 * 12 11 9 26 26 C 1.39713 * 119.61587 * 359.75325 * 8 6 5 27 27 C 1.37797 * 119.90542 * 0.02562 * 26 8 6 28 28 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 29 29 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 30 30 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 31 31 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 32 32 H 1.07997 * 119.95879 * 359.97201 * 5 4 2 33 33 H 0.96705 * 114.00297 * 270.25000 * 7 6 5 34 34 H 0.97000 * 119.99233 * 359.97438 * 11 9 8 35 35 H 1.09011 * 113.61359 * 254.52826 * 14 12 11 36 36 H 1.08998 * 113.61881 * 25.42823 * 14 12 11 37 37 H 1.08998 * 109.47019 * 32.49317 * 17 15 14 38 38 H 1.09000 * 109.46852 * 152.49471 * 17 15 14 39 39 H 1.08001 * 120.02522 * 359.97438 * 20 19 18 40 40 H 1.07993 * 119.96932 * 180.23367 * 21 20 19 41 41 H 1.07997 * 119.94441 * 179.74178 * 22 21 20 42 42 H 1.07998 * 119.97343 * 179.97438 * 23 22 21 43 43 H 1.07992 * 120.02644 * 179.97438 * 24 23 22 44 44 H 1.09007 * 113.61235 * 334.56510 * 25 12 11 45 45 H 1.08994 * 113.61583 * 105.46778 * 25 12 11 46 46 H 1.07990 * 120.05196 * 180.02562 * 26 8 6 47 47 H 1.07998 * 119.84765 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 1.6001 -2.0339 -1.4418 6 6 2.0548 -2.6919 -2.5751 7 8 1.7255 -3.9907 -2.7871 8 6 2.8601 -2.0104 -3.4976 9 6 3.3545 -2.7014 -4.7036 10 8 3.0632 -3.8654 -4.8999 11 7 4.1293 -2.0424 -5.5880 12 6 4.6207 -2.7287 -6.7853 13 1 4.6617 -3.8114 -6.6658 14 6 3.9294 -2.2759 -8.0822 15 6 5.3116 -2.3509 -8.7523 16 1 5.5410 -3.3304 -9.1718 17 6 5.5812 -1.2058 -9.7307 18 8 5.0875 -1.5587 -11.0244 19 6 5.2490 -0.6443 -12.0169 20 6 5.8649 0.5697 -11.7496 21 6 6.0327 1.4952 -12.7614 22 6 5.5779 1.2167 -14.0371 23 6 4.9586 0.0098 -14.3046 24 6 4.7932 -0.9212 -13.2976 25 6 5.9138 -2.1226 -7.3558 26 6 3.1925 -0.6729 -3.2682 27 6 2.7282 -0.0335 -2.1393 28 1 -0.3934 0.4417 0.7649 29 1 1.7923 -0.5138 0.8901 30 1 3.5346 1.7703 0.0322 31 1 1.5616 2.4678 -1.2086 32 1 0.9829 -2.5564 -0.7260 33 1 2.3515 -4.6223 -2.4071 34 1 4.3614 -1.1136 -5.4316 35 1 3.2152 -3.0011 -8.4724 36 1 3.5232 -1.2658 -8.0309 37 1 5.0770 -0.3043 -9.3827 38 1 6.6541 -1.0227 -9.7888 39 1 6.2162 0.7895 -10.7523 40 1 6.5154 2.4389 -12.5547 41 1 5.7063 1.9433 -14.8257 42 1 4.6038 -0.2052 -15.3018 43 1 4.3090 -1.8636 -13.5070 44 1 6.0501 -1.0703 -7.1058 45 1 6.8015 -2.7237 -7.1594 46 1 3.8123 -0.1409 -3.9746 47 1 2.9854 1.0005 -1.9632 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_13422076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:22 Heat of formation + Delta-G solvation = -59.031339 kcal Electronic energy + Delta-G solvation = -29894.907883 eV Core-core repulsion = 25589.886715 eV Total energy + Delta-G solvation = -4305.021168 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.150 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.88115 -41.23575 -40.50583 -39.32856 -38.43423 -38.06637 -37.24856 -34.90609 -32.88689 -32.02271 -31.27383 -31.04504 -29.19680 -27.53444 -26.79601 -24.72925 -24.00539 -23.60646 -23.19056 -22.44535 -21.65305 -20.83477 -19.43341 -19.15553 -18.76436 -18.42454 -17.93093 -17.29116 -16.96790 -16.86807 -16.81111 -16.45259 -16.35687 -16.13881 -15.85866 -15.58124 -15.31392 -15.21036 -14.78871 -14.39274 -14.30043 -14.23979 -14.10048 -13.99131 -13.54204 -13.47188 -13.29902 -13.12148 -13.01089 -12.59964 -12.47917 -12.39705 -12.12698 -12.08126 -11.90011 -11.84480 -11.68051 -11.34254 -10.97411 -10.51247 -10.22831 -10.09338 -9.99418 -9.88257 -9.20637 -4.90634 -0.55192 -0.01470 0.35139 0.45368 1.27679 1.55860 1.68925 1.91578 1.96483 2.20707 2.43021 2.80923 2.98677 3.25871 3.34667 3.43547 3.47757 3.59973 3.69693 3.71014 3.74556 3.86850 3.93555 3.99276 4.12813 4.20097 4.22004 4.26265 4.26715 4.33179 4.46667 4.50778 4.53021 4.61684 4.62654 4.66299 4.70309 4.75733 4.82123 4.92316 4.97453 4.99791 5.04585 5.09783 5.15399 5.31437 5.43208 5.44583 5.47029 5.57667 5.82879 6.36836 6.43472 6.62965 6.86736 7.05823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.092 4.092 3 Si 0.779 3.221 4 C -0.041 4.041 5 C -0.136 4.136 6 C 0.159 3.841 7 O -0.494 6.494 8 C -0.183 4.183 9 C 0.558 3.442 10 O -0.561 6.561 11 N -0.703 5.703 12 C 0.118 3.882 13 H 0.099 0.901 14 C -0.148 4.148 15 C -0.103 4.103 16 H 0.100 0.900 17 C 0.069 3.931 18 O -0.333 6.333 19 C 0.111 3.889 20 C -0.217 4.217 21 C -0.088 4.088 22 C -0.169 4.169 23 C -0.087 4.087 24 C -0.175 4.175 25 C -0.116 4.116 26 C -0.052 4.052 27 C -0.154 4.154 28 H 0.406 0.594 29 H 0.101 0.899 30 H -0.277 1.277 31 H -0.293 1.293 32 H 0.145 0.855 33 H 0.410 0.590 34 H 0.414 0.586 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.167 0.833 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.488 7.653 5.410 10.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.200 4.200 3 Si 0.683 3.317 4 C -0.041 4.041 5 C -0.155 4.155 6 C 0.112 3.888 7 O -0.308 6.308 8 C -0.187 4.187 9 C 0.346 3.654 10 O -0.441 6.441 11 N -0.355 5.355 12 C 0.013 3.987 13 H 0.117 0.883 14 C -0.186 4.186 15 C -0.122 4.122 16 H 0.118 0.882 17 C -0.006 4.006 18 O -0.247 6.247 19 C 0.066 3.934 20 C -0.236 4.236 21 C -0.106 4.106 22 C -0.187 4.187 23 C -0.105 4.105 24 C -0.194 4.194 25 C -0.154 4.154 26 C -0.071 4.071 27 C -0.171 4.171 28 H 0.258 0.742 29 H 0.119 0.881 30 H -0.204 1.204 31 H -0.220 1.220 32 H 0.163 0.837 33 H 0.270 0.730 34 H 0.252 0.748 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.164 0.836 43 H 0.147 0.853 44 H 0.132 0.868 45 H 0.111 0.889 46 H 0.184 0.816 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.296 7.115 4.027 9.235 hybrid contribution 0.262 -0.680 -0.004 0.729 sum 4.558 6.435 4.022 8.852 Atomic orbital electron populations 1.86451 1.17042 1.82570 1.51531 1.25049 0.86170 1.11959 0.96870 0.94010 0.77699 0.74698 0.85281 1.19870 0.95135 0.93404 0.95700 1.21400 1.01515 0.95270 0.97298 1.18765 0.92254 0.85870 0.91869 1.84722 1.52532 1.13112 1.80418 1.20462 1.03921 0.96486 0.97782 1.18268 0.78205 0.85979 0.82981 1.90807 1.58240 1.17974 1.77052 1.45781 1.51160 1.15995 1.22552 1.22497 0.95543 0.98124 0.82498 0.88281 1.23581 0.97014 1.02512 0.95522 1.22298 0.96916 0.99387 0.93553 0.88200 1.22971 0.99710 0.98171 0.79738 1.86061 1.77552 1.42256 1.18828 1.19266 0.96126 0.89169 0.88851 1.21511 1.05860 0.94410 1.01812 1.21327 0.97333 0.99354 0.92560 1.21434 1.01262 0.98105 0.97874 1.21294 0.96882 0.93075 0.99270 1.20708 1.05524 1.02058 0.91099 1.23304 0.96586 1.03546 0.91927 1.21395 0.96958 0.91880 0.96834 1.21041 1.00792 1.00063 0.95236 0.74242 0.88127 1.20370 1.22013 0.83726 0.72995 0.74759 0.92448 0.88837 0.90735 0.90377 0.83831 0.83697 0.84057 0.83644 0.85303 0.86831 0.88863 0.81601 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.87 12.74 -148.98 -1.90 -1.03 16 2 C -0.09 0.27 2.80 71.23 0.20 0.47 16 3 Si 0.78 -4.38 29.77 68.60 2.04 -2.33 16 4 C -0.04 -0.11 5.43 -19.84 -0.11 -0.22 16 5 C -0.14 -0.69 9.53 22.34 0.21 -0.47 16 6 C 0.16 1.22 6.72 22.85 0.15 1.38 16 7 O -0.49 -4.71 11.58 -68.75 -0.80 -5.51 16 8 C -0.18 -1.01 5.89 -20.01 -0.12 -1.13 16 9 C 0.56 4.28 7.76 86.69 0.67 4.95 16 10 O -0.56 -8.96 14.76 16.91 0.25 -8.71 16 11 N -0.70 0.10 5.31 -443.20 -2.35 -2.25 16 12 C 0.12 -0.01 4.24 45.52 0.19 0.19 16 13 H 0.10 0.46 7.46 -2.38 -0.02 0.44 16 14 C -0.15 -0.07 7.43 31.12 0.23 0.16 16 15 C -0.10 0.25 4.01 -10.26 -0.04 0.21 16 16 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 17 C 0.07 -0.12 4.58 71.98 0.33 0.21 16 18 O -0.33 -1.85 10.14 -92.49 -0.94 -2.79 16 19 C 0.11 0.64 6.69 22.51 0.15 0.79 16 20 C -0.22 -0.47 9.04 22.37 0.20 -0.27 16 21 C -0.09 -0.08 10.04 22.25 0.22 0.14 16 22 C -0.17 -0.23 10.04 22.28 0.22 0.00 16 23 C -0.09 -0.23 10.04 22.25 0.22 0.00 16 24 C -0.18 -0.97 9.99 22.37 0.22 -0.75 16 25 C -0.12 0.74 7.39 31.12 0.23 0.97 16 26 C -0.05 0.01 9.54 22.52 0.21 0.22 16 27 C -0.15 -0.17 8.64 22.24 0.19 0.02 16 28 H 0.41 -4.95 8.74 -74.06 -0.65 -5.60 16 29 H 0.10 -0.73 7.96 -2.39 -0.02 -0.75 16 30 H -0.28 0.46 7.11 99.48 0.71 1.17 16 31 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 32 H 0.14 0.51 8.06 -2.91 -0.02 0.49 16 33 H 0.41 0.67 9.06 -74.05 -0.67 0.00 16 34 H 0.41 -2.88 6.76 -92.71 -0.63 -3.50 16 35 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 36 H 0.09 -0.10 7.90 -2.39 -0.02 -0.11 16 37 H 0.07 -0.31 7.35 -2.39 -0.02 -0.32 16 38 H 0.08 -0.34 7.67 -2.39 -0.02 -0.36 16 39 H 0.14 -0.36 6.30 -2.91 -0.02 -0.38 16 40 H 0.15 -0.56 8.06 -2.91 -0.02 -0.59 16 41 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 42 H 0.15 -0.26 8.06 -2.91 -0.02 -0.28 16 43 H 0.13 0.58 8.06 -2.91 -0.02 0.55 16 44 H 0.11 -1.23 8.08 -2.38 -0.02 -1.25 16 45 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 46 H 0.17 -1.34 6.40 -2.92 -0.02 -1.36 16 47 H 0.14 -0.20 4.85 -2.91 -0.01 -0.22 16 Total: 0.00 -27.60 391.55 -0.95 -28.55 By element: Atomic # 1 Polarization: -11.93 SS G_CDS: -0.87 Total: -12.80 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 3.61 Total: 6.86 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -2.35 Total: -2.25 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -3.38 Total: -18.03 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.04 Total: -2.33 kcal Total: -27.60 -0.95 -28.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_13422076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.479 kcal (2) G-P(sol) polarization free energy of solvation -27.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds