Wall clock time and date at job start Tue Mar 9 2021 13:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39055 * 110.99854 * 236.04434 * 2 1 3 5 5 C 1.39189 * 119.93336 * 239.73141 * 4 2 1 6 6 C 1.50699 * 119.96513 * 359.97438 * 5 4 2 7 7 O 1.42897 * 109.46965 * 75.00563 * 6 5 4 8 8 Si 1.86299 * 109.47243 * 195.00125 * 6 5 4 9 9 C 1.37634 * 120.06841 * 179.72480 * 5 4 2 10 10 C 1.39773 * 119.92800 * 0.54663 * 9 5 4 11 11 C 1.47523 * 120.06701 * 179.74343 * 10 9 5 12 12 O 1.21593 * 120.00052 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99932 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00083 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.84551 * 336.19151 * 14 13 11 16 16 C 1.53781 * 113.61733 * 107.50058 * 14 13 11 17 17 C 1.53775 * 87.08070 * 139.98140 * 16 14 13 18 18 H 1.08996 * 113.69154 * 89.13135 * 17 16 14 19 19 C 1.53005 * 113.61525 * 220.02262 * 17 16 14 20 20 O 1.42903 * 109.46715 * 272.49613 * 19 17 16 21 21 C 1.35905 * 116.99966 * 179.97438 * 20 19 17 22 22 C 1.38726 * 120.05194 * 359.72799 * 21 20 19 23 23 C 1.38149 * 119.94237 * 179.74272 * 22 21 20 24 24 C 1.38270 * 120.05141 * 0.50887 * 23 22 21 25 25 C 1.38262 * 120.11271 * 359.76972 * 24 23 22 26 26 C 1.38140 * 120.05546 * 359.97092 * 25 24 23 27 27 C 1.53773 * 113.61364 * 204.99953 * 14 13 11 28 28 C 1.39813 * 119.86667 * 359.72615 * 10 9 5 29 29 C 1.37595 * 119.92779 * 359.97438 * 28 10 9 30 30 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 31 31 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 32 32 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 33 33 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 34 34 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 36 36 H 1.08996 * 109.47294 * 315.00141 * 6 5 4 37 37 H 0.96696 * 114.00429 * 59.99349 * 7 6 5 38 38 H 1.48496 * 110.00301 * 180.02562 * 8 6 5 39 39 H 1.48499 * 110.00206 * 301.32157 * 8 6 5 40 40 H 1.08001 * 120.03741 * 180.24820 * 9 5 4 41 41 H 0.97002 * 119.99714 * 0.02562 * 13 11 10 42 42 H 1.08994 * 113.61315 * 254.53460 * 16 14 13 43 43 H 1.09000 * 113.61086 * 25.42950 * 16 14 13 44 44 H 1.08996 * 109.47365 * 32.49610 * 19 17 16 45 45 H 1.09000 * 109.47439 * 152.50114 * 19 17 16 46 46 H 1.08008 * 120.03410 * 359.97438 * 22 21 20 47 47 H 1.08004 * 119.97602 * 180.23437 * 23 22 21 48 48 H 1.08007 * 119.93938 * 179.74880 * 24 23 22 49 49 H 1.08000 * 119.97047 * 180.02562 * 25 24 23 50 50 H 1.07999 * 120.02780 * 179.97438 * 26 25 24 51 51 H 1.09003 * 113.61830 * 334.56761 * 27 14 13 52 52 H 1.09007 * 113.61716 * 105.38364 * 27 14 13 53 53 H 1.07994 * 120.03772 * 180.02562 * 28 10 9 54 54 H 1.07996 * 119.96661 * 180.02562 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7251 -1.0768 5 6 2.7838 -1.8297 -0.8521 6 6 3.1270 -2.2377 0.5575 7 8 1.9958 -2.8707 1.1588 8 14 4.5610 -3.4265 0.5282 9 6 3.2739 -2.5528 -1.9157 10 6 2.9602 -2.1700 -3.2228 11 6 3.4885 -2.9395 -4.3653 12 8 4.1980 -3.9075 -4.1703 13 7 3.1848 -2.5694 -5.6251 14 6 3.7089 -3.3339 -6.7597 15 1 4.6173 -3.8846 -6.5154 16 6 2.6448 -4.1832 -7.4746 17 6 3.3146 -3.7688 -8.7953 18 1 4.1147 -4.4389 -9.1097 19 6 2.3203 -3.4633 -9.9174 20 8 2.0045 -4.6696 -10.6155 21 6 1.1277 -4.5727 -11.6493 22 6 0.5783 -3.3429 -11.9813 23 6 -0.3087 -3.2461 -13.0360 24 6 -0.6569 -4.3754 -13.7538 25 6 -0.1150 -5.6032 -13.4212 26 6 0.7764 -5.7043 -12.3708 27 6 3.8148 -2.5158 -8.0574 28 6 2.1445 -1.0566 -3.4455 29 6 1.6526 -0.3415 -2.3778 30 1 -0.3634 -1.0252 0.0708 31 1 -0.3633 0.4513 -0.9233 32 1 -0.3633 0.5740 0.8525 33 1 1.6461 1.8947 0.8901 34 1 3.0851 1.3422 0.0005 35 1 1.6460 1.8948 -0.8900 36 1 3.3990 -1.3545 1.1354 37 1 1.6978 -3.6658 0.6961 38 1 4.9089 -3.8370 1.9123 39 1 4.2143 -4.6209 -0.2832 40 1 3.9042 -3.4122 -1.7406 41 1 2.6191 -1.7969 -5.7807 42 1 2.7217 -5.2493 -7.2616 43 1 1.6309 -3.7997 -7.3601 44 1 1.4102 -3.0411 -9.4914 45 1 2.7630 -2.7478 -10.6104 46 1 0.8465 -2.4612 -11.4181 47 1 -0.7339 -2.2883 -13.2974 48 1 -1.3536 -4.2983 -14.5755 49 1 -0.3883 -6.4837 -13.9837 50 1 1.1991 -6.6636 -12.1111 51 1 3.1208 -1.6764 -8.1023 52 1 4.8361 -2.2346 -8.3143 53 1 1.9000 -0.7586 -4.4543 54 1 1.0220 0.5184 -2.5491 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_13422196.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:29 Heat of formation + Delta-G solvation = 0.098530 kcal Electronic energy + Delta-G solvation = -34105.689297 eV Core-core repulsion = 29589.875617 eV Total energy + Delta-G solvation = -4515.813680 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.193 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.81661 -41.24733 -40.68968 -39.49669 -38.10886 -37.92865 -37.22787 -34.88998 -32.78519 -32.02080 -31.40905 -30.93497 -29.07525 -28.51221 -26.91859 -26.75140 -26.34541 -24.40402 -23.50921 -23.15950 -22.85375 -22.29381 -21.37922 -20.65736 -19.28863 -18.97526 -18.01616 -17.74639 -17.61586 -17.04575 -16.92294 -16.72749 -16.52439 -16.31447 -16.17788 -16.12046 -15.79271 -15.63178 -15.46218 -15.24934 -14.98985 -14.71725 -14.40033 -14.30773 -14.13748 -14.10673 -13.97394 -13.52974 -13.47844 -13.29010 -13.11953 -13.03399 -12.92091 -12.65397 -12.61840 -12.57254 -12.38654 -12.18290 -12.04697 -11.86192 -11.83211 -11.64874 -11.30986 -11.06512 -10.58164 -10.20472 -10.11933 -9.97286 -9.77138 -9.47487 -9.18269 -5.00086 -0.38307 0.14979 0.37279 0.47575 1.26061 1.52860 1.63509 1.87379 1.98218 2.25154 2.62062 2.81323 2.83075 3.38590 3.43956 3.49919 3.57147 3.63728 3.74705 3.77627 3.79742 3.89481 3.96285 4.04882 4.15315 4.22886 4.24748 4.26652 4.29432 4.36823 4.39488 4.46457 4.49003 4.53959 4.54587 4.62820 4.67546 4.68239 4.69288 4.73126 4.80366 4.82911 4.96764 4.98435 5.01304 5.02857 5.04868 5.06708 5.12622 5.20269 5.26539 5.33648 5.46673 5.50189 5.57331 5.59804 5.85041 5.87791 6.30809 6.43775 6.46444 6.50266 7.10797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.523 5.523 3 C 0.025 3.975 4 C 0.141 3.859 5 C -0.111 4.111 6 C -0.047 4.047 7 O -0.533 6.533 8 Si 0.736 3.264 9 C -0.068 4.068 10 C -0.149 4.149 11 C 0.558 3.442 12 O -0.581 6.581 13 N -0.699 5.699 14 C 0.117 3.883 15 H 0.098 0.902 16 C -0.146 4.146 17 C -0.104 4.104 18 H 0.098 0.902 19 C 0.068 3.932 20 O -0.333 6.333 21 C 0.112 3.888 22 C -0.217 4.217 23 C -0.088 4.088 24 C -0.169 4.169 25 C -0.088 4.088 26 C -0.176 4.176 27 C -0.116 4.116 28 C -0.054 4.054 29 C -0.155 4.155 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.126 0.874 37 H 0.379 0.621 38 H -0.293 1.293 39 H -0.294 1.294 40 H 0.129 0.871 41 H 0.416 0.584 42 H 0.056 0.944 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.141 0.859 49 H 0.145 0.855 50 H 0.129 0.871 51 H 0.115 0.885 52 H 0.091 0.909 53 H 0.162 0.838 54 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.754 8.920 -4.514 10.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.244 5.244 3 C -0.121 4.121 4 C 0.046 3.954 5 C -0.112 4.112 6 C -0.157 4.157 7 O -0.340 6.340 8 Si 0.643 3.357 9 C -0.087 4.087 10 C -0.152 4.152 11 C 0.346 3.654 12 O -0.462 6.462 13 N -0.351 5.351 14 C 0.012 3.988 15 H 0.116 0.884 16 C -0.185 4.185 17 C -0.123 4.123 18 H 0.116 0.884 19 C -0.006 4.006 20 O -0.247 6.247 21 C 0.067 3.933 22 C -0.235 4.235 23 C -0.106 4.106 24 C -0.187 4.187 25 C -0.106 4.106 26 C -0.194 4.194 27 C -0.154 4.154 28 C -0.073 4.073 29 C -0.175 4.175 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.144 0.856 37 H 0.227 0.773 38 H -0.221 1.221 39 H -0.222 1.222 40 H 0.146 0.854 41 H 0.255 0.745 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.163 0.837 47 H 0.163 0.837 48 H 0.159 0.841 49 H 0.163 0.837 50 H 0.147 0.853 51 H 0.133 0.867 52 H 0.110 0.890 53 H 0.179 0.821 54 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.650 7.585 -3.235 8.409 hybrid contribution -1.470 -0.310 -0.645 1.635 sum -3.120 7.275 -3.879 8.815 Atomic orbital electron populations 1.22431 0.84664 1.02499 1.01809 1.59367 1.09430 1.15043 1.40578 1.22544 1.01101 0.86255 1.02186 1.18956 0.93816 0.92971 0.89622 1.20111 0.99487 0.96125 0.95470 1.24750 0.95446 1.03790 0.91730 1.86626 1.47278 1.44686 1.55386 0.94380 0.83549 0.79937 0.77829 1.21185 0.97369 0.98544 0.91604 1.19840 1.03559 0.99068 0.92759 1.18479 0.79489 0.83392 0.84004 1.90795 1.39728 1.29626 1.86004 1.45755 1.52137 1.32815 1.04351 1.22494 0.97700 0.94331 0.84258 0.88360 1.23570 0.99495 1.00389 0.95029 1.22302 0.98152 0.99665 0.92201 0.88385 1.22986 0.98805 0.85319 0.93514 1.86061 1.59168 1.36297 1.43194 1.19251 0.90755 0.94747 0.88575 1.21514 1.02852 0.96913 1.02235 1.21331 0.95651 0.99725 0.93865 1.21430 1.02536 0.92741 1.02033 1.21283 0.94820 0.98976 0.95497 1.20701 1.02571 0.97689 0.98465 1.23303 1.03961 0.96537 0.91574 1.21437 0.93237 0.91896 1.00745 1.21866 1.01837 1.01610 0.92218 0.92125 0.93860 0.90091 0.89992 0.90901 0.93853 0.85641 0.77305 1.22082 1.22152 0.85355 0.74474 0.92477 0.88599 0.90583 0.90468 0.83720 0.83699 0.84141 0.83740 0.85342 0.86682 0.88995 0.82108 0.83203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 9.34 127.69 1.19 1.11 16 2 N -0.52 0.34 4.20 -745.08 -3.13 -2.79 16 3 C 0.03 -0.11 9.32 127.69 1.19 1.08 16 4 C 0.14 -0.03 4.69 38.47 0.18 0.15 16 5 C -0.11 -0.22 5.27 -19.78 -0.10 -0.32 16 6 C -0.05 -0.12 2.33 71.24 0.17 0.04 16 7 O -0.53 -2.70 12.88 -148.98 -1.92 -4.62 16 8 Si 0.74 2.54 30.25 68.60 2.08 4.61 16 9 C -0.07 -0.26 8.19 22.50 0.18 -0.07 16 10 C -0.15 -0.21 5.88 -20.08 -0.12 -0.32 16 11 C 0.56 2.54 7.76 86.69 0.67 3.21 16 12 O -0.58 -8.07 15.94 -4.01 -0.06 -8.14 16 13 N -0.70 2.13 5.30 -443.22 -2.35 -0.22 16 14 C 0.12 -0.25 4.24 45.51 0.19 -0.06 16 15 H 0.10 0.29 7.46 -2.39 -0.02 0.27 16 16 C -0.15 0.25 7.43 31.12 0.23 0.48 16 17 C -0.10 0.41 4.01 -10.27 -0.04 0.37 16 18 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 19 C 0.07 -0.22 4.58 71.98 0.33 0.11 16 20 O -0.33 -1.44 10.14 -92.48 -0.94 -2.38 16 21 C 0.11 0.52 6.69 22.50 0.15 0.67 16 22 C -0.22 -0.23 9.04 22.37 0.20 -0.03 16 23 C -0.09 0.00 10.04 22.26 0.22 0.22 16 24 C -0.17 -0.11 10.04 22.28 0.22 0.12 16 25 C -0.09 -0.17 10.04 22.25 0.22 0.06 16 26 C -0.18 -0.82 9.99 22.36 0.22 -0.60 16 27 C -0.12 0.94 7.39 31.12 0.23 1.17 16 28 C -0.05 0.28 9.53 22.50 0.21 0.49 16 29 C -0.16 0.66 8.57 22.36 0.19 0.86 16 30 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.04 -0.22 7.09 -2.39 -0.02 -0.24 16 32 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 33 H 0.08 -0.42 8.14 -2.38 -0.02 -0.44 16 34 H 0.07 -0.30 8.12 -2.39 -0.02 -0.32 16 35 H 0.04 -0.28 7.45 -2.39 -0.02 -0.30 16 36 H 0.13 0.24 7.78 -2.39 -0.02 0.22 16 37 H 0.38 0.11 8.70 -74.06 -0.64 -0.53 16 38 H -0.29 -2.87 7.11 99.48 0.71 -2.16 16 39 H -0.29 -2.78 6.68 99.48 0.66 -2.11 16 40 H 0.13 0.85 4.43 -2.91 -0.01 0.84 16 41 H 0.42 -4.27 6.74 -92.71 -0.63 -4.89 16 42 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.10 -0.35 7.90 -2.39 -0.02 -0.37 16 44 H 0.08 -0.45 7.35 -2.39 -0.02 -0.46 16 45 H 0.08 -0.44 7.68 -2.39 -0.02 -0.45 16 46 H 0.15 -0.55 6.30 -2.91 -0.02 -0.57 16 47 H 0.15 -0.69 8.06 -2.91 -0.02 -0.71 16 48 H 0.14 -0.48 8.06 -2.91 -0.02 -0.51 16 49 H 0.14 -0.34 8.06 -2.91 -0.02 -0.36 16 50 H 0.13 0.47 8.06 -2.91 -0.02 0.45 16 51 H 0.11 -1.47 8.08 -2.39 -0.02 -1.49 16 52 H 0.09 -0.79 8.14 -2.38 -0.02 -0.81 16 53 H 0.16 -2.02 6.39 -2.91 -0.02 -2.04 16 54 H 0.15 -1.24 7.01 -2.91 -0.02 -1.26 16 Total: 0.00 -22.70 436.42 -0.71 -23.41 By element: Atomic # 1 Polarization: -18.27 SS G_CDS: -0.34 Total: -18.61 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 5.96 Total: 8.74 kcal Atomic # 7 Polarization: 2.47 SS G_CDS: -5.48 Total: -3.01 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -2.92 Total: -15.13 kcal Atomic # 14 Polarization: 2.54 SS G_CDS: 2.08 Total: 4.61 kcal Total: -22.70 -0.71 -23.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_13422196.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.506 kcal (2) G-P(sol) polarization free energy of solvation -22.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds