Wall clock time and date at job start Tue Mar 9 2021 13:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47250 * 2 1 4 4 C 1.50699 * 109.46963 * 120.00063 * 2 1 3 5 5 C 1.34177 * 125.44053 * 65.00361 * 4 2 1 6 6 C 1.47023 * 105.95631 * 179.97438 * 5 4 2 7 7 C 1.47374 * 127.19075 * 179.97438 * 6 5 4 8 8 O 1.21612 * 120.00495 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99849 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00070 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.90805 * 23.74892 * 10 9 7 12 12 C 1.53790 * 113.61458 * 154.99740 * 10 9 7 13 13 C 1.53782 * 87.07895 * 139.97921 * 12 10 9 14 14 H 1.09002 * 113.61366 * 89.20341 * 13 12 10 15 15 C 1.52998 * 113.61341 * 220.01626 * 13 12 10 16 16 O 1.42901 * 109.47046 * 185.00234 * 15 13 12 17 17 C 1.35905 * 116.99604 * 180.02562 * 16 15 13 18 18 C 1.38723 * 120.05884 * 359.72201 * 17 16 15 19 19 C 1.38145 * 119.94323 * 179.77076 * 18 17 16 20 20 C 1.38260 * 120.05692 * 0.50972 * 19 18 17 21 21 C 1.38268 * 120.10972 * 359.74026 * 20 19 18 22 22 C 1.38139 * 120.05510 * 0.02562 * 21 20 19 23 23 C 1.53775 * 87.08442 * 334.56796 * 13 12 10 24 24 C 1.36414 * 105.61436 * 0.22643 * 6 5 4 25 25 O 1.33661 * 108.39727 * 359.62794 * 24 6 5 26 26 H 0.96696 * 114.00417 * 299.99813 * 1 2 3 27 27 H 1.09000 * 109.47326 * 239.99819 * 2 1 3 28 28 H 1.48499 * 109.99996 * 300.00159 * 3 2 1 29 29 H 1.48496 * 109.99663 * 61.31560 * 3 2 1 30 30 H 1.08004 * 127.02141 * 0.02562 * 5 4 2 31 31 H 0.97008 * 120.00299 * 359.97438 * 9 7 6 32 32 H 1.08998 * 113.61173 * 25.43268 * 12 10 9 33 33 H 1.08998 * 113.69003 * 254.53718 * 12 10 9 34 34 H 1.08999 * 109.47084 * 65.00277 * 15 13 12 35 35 H 1.08998 * 109.47592 * 305.00378 * 15 13 12 36 36 H 1.08001 * 120.02769 * 0.02562 * 18 17 16 37 37 H 1.08006 * 119.97076 * 180.25587 * 19 18 17 38 38 H 1.08001 * 119.94806 * 179.77234 * 20 19 18 39 39 H 1.08008 * 119.96969 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.02451 * 179.97438 * 22 21 20 41 41 H 1.08996 * 113.61937 * 139.97790 * 23 13 12 42 42 H 1.08998 * 113.61683 * 270.88481 * 23 13 12 43 43 H 1.08002 * 125.80084 * 179.75538 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7551 -2.0122 1.5037 6 6 2.4130 -2.2463 2.7975 7 6 2.5006 -3.5193 3.5349 8 8 1.9931 -4.5244 3.0755 9 7 3.1432 -3.5695 4.7185 10 6 3.2308 -4.8350 5.4514 11 1 3.1275 -5.7071 4.8058 12 6 4.4356 -4.9131 6.4040 13 6 3.4987 -5.6094 7.4052 14 1 3.4697 -6.6934 7.2948 15 6 3.7108 -5.1653 8.8539 16 8 2.8823 -5.9462 9.7176 17 6 2.9505 -5.6762 11.0478 18 6 3.8015 -4.6842 11.5127 19 6 3.8654 -4.4086 12.8649 20 6 3.0899 -5.1274 13.7556 21 6 2.2447 -6.1201 13.2952 22 6 2.1736 -6.3964 11.9436 23 6 2.3382 -4.8854 6.7026 24 6 2.9204 -1.0377 3.1754 25 8 2.6269 -0.1420 2.2277 26 1 -0.3934 0.4416 0.7650 27 1 1.7924 -0.5139 -0.8900 28 1 1.5615 2.4679 -1.2085 29 1 1.5878 2.4585 1.2242 30 1 1.2367 -2.7397 0.8967 31 1 3.5484 -2.7678 5.0849 32 1 4.7890 -3.9388 6.7417 33 1 5.2401 -5.5528 6.0413 34 1 3.4483 -4.1121 8.9532 35 1 4.7563 -5.3066 9.1279 36 1 4.4106 -4.1252 10.8178 37 1 4.5248 -3.6335 13.2269 38 1 3.1440 -4.9129 14.8127 39 1 1.6396 -6.6800 13.9930 40 1 1.5136 -7.1721 11.5846 41 1 1.4486 -5.5032 6.5796 42 1 2.1182 -3.9036 7.1218 43 1 3.4681 -0.8389 4.0847 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_13456056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:20 Heat of formation + Delta-G solvation = -30.424308 kcal Electronic energy + Delta-G solvation = -26299.413252 eV Core-core repulsion = 22279.396337 eV Total energy + Delta-G solvation = -4020.016914 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.72662 -41.41253 -40.80664 -39.41666 -38.16665 -38.07841 -34.93100 -33.81954 -32.05390 -31.81290 -30.99071 -29.10325 -26.78138 -26.72826 -25.52934 -23.92208 -23.27845 -22.40385 -22.28553 -21.31372 -20.45617 -19.38746 -19.10918 -17.96313 -17.66210 -17.52248 -17.31082 -16.94157 -16.88968 -16.51934 -16.21359 -16.11162 -15.88226 -15.59993 -15.31640 -14.94189 -14.37955 -14.28894 -14.22663 -14.06094 -13.98413 -13.62476 -13.47801 -13.28602 -13.00236 -12.95298 -12.56587 -12.38628 -12.14476 -12.04570 -11.83750 -11.65380 -11.32726 -11.19007 -10.98895 -10.76782 -10.15907 -9.96768 -9.79980 -9.17772 -4.91749 0.25240 0.37818 0.48065 0.80069 1.17643 1.53085 1.75330 1.95202 1.99737 2.20889 2.26812 2.83590 3.20857 3.38451 3.47978 3.51302 3.54540 3.75094 3.77430 3.89991 3.95686 3.97655 4.22071 4.25020 4.29883 4.33420 4.38597 4.44829 4.49594 4.50055 4.55090 4.67976 4.71600 4.75121 4.80857 4.88970 4.97101 5.03039 5.07203 5.11531 5.19465 5.34141 5.47194 5.51710 5.60319 5.82134 5.85584 6.33674 6.46281 6.47596 7.13789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.047 4.047 3 Si 0.794 3.206 4 C -0.050 4.050 5 C -0.152 4.152 6 C -0.271 4.271 7 C 0.586 3.414 8 O -0.589 6.589 9 N -0.698 5.698 10 C 0.117 3.883 11 H 0.094 0.906 12 C -0.114 4.114 13 C -0.105 4.105 14 H 0.096 0.904 15 C 0.068 3.932 16 O -0.334 6.334 17 C 0.112 3.888 18 C -0.216 4.216 19 C -0.088 4.088 20 C -0.169 4.169 21 C -0.088 4.088 22 C -0.176 4.176 23 C -0.146 4.146 24 C 0.069 3.931 25 O -0.165 6.165 26 H 0.390 0.610 27 H 0.148 0.852 28 H -0.289 1.289 29 H -0.285 1.285 30 H 0.142 0.858 31 H 0.418 0.582 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.128 0.872 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.150 6.053 4.146 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.155 4.155 3 Si 0.696 3.304 4 C -0.098 4.098 5 C -0.172 4.172 6 C -0.275 4.275 7 C 0.375 3.625 8 O -0.471 6.471 9 N -0.349 5.349 10 C 0.012 3.988 11 H 0.112 0.888 12 C -0.152 4.152 13 C -0.124 4.124 14 H 0.114 0.886 15 C -0.006 4.006 16 O -0.248 6.248 17 C 0.067 3.933 18 C -0.235 4.235 19 C -0.106 4.106 20 C -0.188 4.188 21 C -0.106 4.106 22 C -0.195 4.195 23 C -0.185 4.185 24 C -0.002 4.002 25 O -0.060 6.060 26 H 0.241 0.759 27 H 0.165 0.835 28 H -0.216 1.216 29 H -0.211 1.211 30 H 0.160 0.840 31 H 0.257 0.743 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.146 0.854 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 6.629 6.020 3.146 9.491 hybrid contribution -1.346 -0.531 0.563 1.553 sum 5.283 5.489 3.709 8.473 Atomic orbital electron populations 1.86651 1.17608 1.80598 1.50042 1.24744 0.83441 1.13469 0.93858 0.93445 0.89778 0.70116 0.77020 1.22675 1.01404 0.92707 0.93028 1.22579 1.02246 0.95992 0.96425 1.21483 1.11542 0.95039 0.99462 1.17592 0.77242 0.86880 0.80784 1.90790 1.49029 1.37695 1.69547 1.45624 1.56217 1.13016 1.20033 1.22467 0.97961 0.87114 0.91223 0.88833 1.23304 0.95870 1.02995 0.93023 1.22301 0.97686 1.01118 0.91289 0.88564 1.22988 0.94530 0.95078 0.88011 1.86063 1.63973 1.60238 1.14527 1.19249 0.95748 0.95083 0.83242 1.21516 1.03006 1.01060 0.97884 1.21331 0.97967 0.98813 0.92443 1.21428 0.98509 0.97755 1.01061 1.21283 0.97831 0.97075 0.94412 1.20702 1.02848 1.02907 0.93023 1.23577 0.97535 1.01558 0.95790 1.25339 0.96736 0.84876 0.93211 1.83727 1.56888 1.39081 1.26313 0.75950 0.83488 1.21565 1.21126 0.83972 0.74339 0.86312 0.89111 0.90418 0.90414 0.83624 0.83660 0.84152 0.83774 0.85393 0.92682 0.88348 0.71911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.05 12.88 -148.98 -1.92 -2.97 16 2 C -0.05 0.07 2.97 71.24 0.21 0.29 16 3 Si 0.79 -2.97 32.09 68.60 2.20 -0.76 16 4 C -0.05 -0.02 6.18 24.76 0.15 0.13 16 5 C -0.15 -0.78 10.90 23.65 0.26 -0.52 16 6 C -0.27 -0.54 6.31 -18.99 -0.12 -0.66 16 7 C 0.59 3.34 7.81 86.65 0.68 4.02 16 8 O -0.59 -9.79 16.58 -4.07 -0.07 -9.86 16 9 N -0.70 2.33 5.35 -443.33 -2.37 -0.04 16 10 C 0.12 -0.22 4.24 45.52 0.19 -0.03 16 11 H 0.09 0.38 7.47 -2.39 -0.02 0.36 16 12 C -0.11 0.95 7.39 31.12 0.23 1.18 16 13 C -0.10 0.42 4.01 -10.27 -0.04 0.38 16 14 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 15 C 0.07 -0.24 4.58 71.98 0.33 0.09 16 16 O -0.33 -1.43 10.14 -92.48 -0.94 -2.36 16 17 C 0.11 0.51 6.69 22.50 0.15 0.66 16 18 C -0.22 -0.18 9.04 22.36 0.20 0.02 16 19 C -0.09 0.01 10.04 22.25 0.22 0.24 16 20 C -0.17 -0.09 10.04 22.28 0.22 0.13 16 21 C -0.09 -0.17 10.04 22.25 0.22 0.06 16 22 C -0.18 -0.83 9.99 22.36 0.22 -0.60 16 23 C -0.15 0.24 7.43 31.12 0.23 0.47 16 24 C 0.07 -0.46 11.61 67.39 0.78 0.33 16 25 O -0.16 0.51 8.90 4.38 0.04 0.55 16 26 H 0.39 -1.52 8.70 -74.06 -0.64 -2.16 16 27 H 0.15 -0.59 7.96 -2.39 -0.02 -0.61 16 28 H -0.29 -0.81 7.11 99.48 0.71 -0.10 16 29 H -0.29 -0.31 7.11 99.48 0.71 0.39 16 30 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.42 -5.09 7.70 -92.70 -0.71 -5.81 16 32 H 0.12 -1.63 8.08 -2.39 -0.02 -1.65 16 33 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H 0.08 -0.50 7.37 -2.39 -0.02 -0.52 16 35 H 0.08 -0.46 7.65 -2.39 -0.02 -0.48 16 36 H 0.15 -0.62 6.30 -2.91 -0.02 -0.64 16 37 H 0.15 -0.73 8.06 -2.91 -0.02 -0.75 16 38 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 39 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 40 H 0.13 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.10 -0.40 7.90 -2.39 -0.02 -0.42 16 43 H 0.27 -4.89 7.47 -2.91 -0.02 -4.91 16 Total: 0.00 -27.44 370.74 0.83 -26.62 By element: Atomic # 1 Polarization: -17.08 SS G_CDS: -0.27 Total: -17.35 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 4.15 Total: 6.18 kcal Atomic # 7 Polarization: 2.33 SS G_CDS: -2.37 Total: -0.04 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -2.88 Total: -14.64 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.20 Total: -0.76 kcal Total: -27.44 0.83 -26.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_13456056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.808 kcal (2) G-P(sol) polarization free energy of solvation -27.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds