Wall clock time and date at job start Tue Mar 9 2021 13:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.34857 * 125.89101 * 119.69150 * 4 2 1 6 6 C 1.40887 * 107.41731 * 179.88675 * 5 4 2 7 7 C 1.34850 * 107.41628 * 0.37780 * 6 5 4 8 8 C 1.50707 * 125.88685 * 179.80422 * 7 6 5 9 9 C 1.50700 * 109.47104 * 274.95868 * 8 7 6 10 10 O 1.21287 * 120.00080 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00406 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00658 * 180.02562 * 11 9 8 13 13 H 1.08999 * 112.84539 * 336.19812 * 12 11 9 14 14 C 1.53782 * 113.61397 * 107.49870 * 12 11 9 15 15 C 1.53784 * 87.07985 * 139.98237 * 14 12 11 16 16 H 1.09002 * 113.61236 * 89.11439 * 15 14 12 17 17 C 1.52998 * 113.61802 * 220.02053 * 15 14 12 18 18 O 1.42900 * 109.46713 * 272.49774 * 17 15 14 19 19 C 1.35899 * 116.99524 * 179.97438 * 18 17 15 20 20 C 1.38733 * 120.06117 * 359.72762 * 19 18 17 21 21 C 1.38143 * 119.94771 * 179.74427 * 20 19 18 22 22 C 1.38269 * 120.05381 * 0.50855 * 21 20 19 23 23 C 1.38261 * 120.11290 * 359.76449 * 22 21 20 24 24 C 1.38150 * 120.05673 * 359.97438 * 23 22 21 25 25 C 1.53774 * 113.61676 * 204.99862 * 12 11 9 26 26 N 1.36331 * 108.22111 * 359.77190 * 7 6 5 27 27 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 28 28 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 29 29 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 30 30 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 31 31 H 1.08005 * 126.28798 * 0.02625 * 5 4 2 32 32 H 1.08000 * 126.29230 * 180.12974 * 6 5 4 33 33 H 1.08997 * 109.47399 * 34.96173 * 8 7 6 34 34 H 1.08994 * 109.46929 * 154.96199 * 8 7 6 35 35 H 0.97010 * 119.99534 * 0.02562 * 11 9 8 36 36 H 1.08992 * 113.61644 * 254.53177 * 14 12 11 37 37 H 1.08998 * 113.61002 * 25.43987 * 14 12 11 38 38 H 1.08997 * 109.46720 * 32.49413 * 17 15 14 39 39 H 1.08996 * 109.47087 * 152.50186 * 17 15 14 40 40 H 1.07998 * 120.02377 * 359.97438 * 20 19 18 41 41 H 1.08001 * 119.97351 * 180.23245 * 21 20 19 42 42 H 1.07996 * 119.94299 * 179.75122 * 22 21 20 43 43 H 1.07997 * 119.97411 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.03030 * 179.97438 * 24 23 22 45 45 H 1.09006 * 113.61607 * 334.56691 * 25 12 11 46 46 H 1.09009 * 113.61609 * 105.46544 * 25 12 11 47 47 H 0.96996 * 125.64050 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7050 -0.1711 -2.1943 6 6 2.9442 -1.1745 -3.1539 7 6 2.3006 -2.2864 -2.7442 8 6 2.2755 -3.6092 -3.4658 9 6 1.1823 -3.5950 -4.5030 10 8 0.4918 -2.6078 -4.6428 11 7 0.9718 -4.6793 -5.2752 12 6 -0.0905 -4.6653 -6.2839 13 1 -0.8784 -3.9466 -6.0587 14 6 0.4318 -4.5774 -7.7276 15 6 -0.6676 -5.5849 -8.1033 16 1 -1.6134 -5.1172 -8.3769 17 6 -0.2120 -6.6417 -9.1116 18 8 -0.4032 -6.1473 -10.4387 19 6 -0.0455 -6.9689 -11.4604 20 6 0.4839 -8.2227 -11.1913 21 6 0.8417 -9.0580 -12.2318 22 6 0.6825 -8.6412 -13.5406 23 6 0.1604 -7.3899 -13.8114 24 6 -0.2040 -6.5529 -12.7745 25 6 -0.6174 -6.0646 -6.6431 26 7 1.6771 -2.0077 -1.5642 27 1 -0.3934 0.4417 -0.7651 28 1 1.7923 -0.5139 0.8900 29 1 1.5879 2.4585 -1.2243 30 1 1.5615 2.4679 1.2085 31 1 3.0754 0.8431 -2.2238 32 1 3.5314 -1.0709 -4.0543 33 1 3.2363 -3.7757 -3.9529 34 1 2.0873 -4.4098 -2.7505 35 1 1.5239 -5.4691 -5.1632 36 1 0.2979 -3.5956 -8.1814 37 1 1.4421 -4.9676 -7.8508 38 1 0.8438 -6.8623 -8.9546 39 1 -0.7976 -7.5507 -8.9747 40 1 0.6126 -8.5469 -10.1693 41 1 1.2504 -10.0356 -12.0228 42 1 0.9666 -9.2941 -14.3526 43 1 0.0374 -7.0665 -14.8345 44 1 -0.6114 -5.5755 -12.9866 45 1 0.1061 -6.8614 -6.4699 46 1 -1.5985 -6.2834 -6.2213 47 1 1.1414 -2.6296 -1.0474 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_14644196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:39 Heat of formation + Delta-G solvation = -8.643289 kcal Electronic energy + Delta-G solvation = -27995.607849 eV Core-core repulsion = 23918.716474 eV Total energy + Delta-G solvation = -4076.891375 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34563 -41.39223 -40.79269 -39.44897 -38.10190 -37.85810 -34.70693 -33.05355 -32.01454 -31.92885 -31.05397 -29.69965 -28.75200 -26.75348 -25.47217 -24.26005 -23.39085 -22.66828 -21.73657 -21.36787 -21.16385 -20.58174 -19.21485 -19.01262 -18.09522 -17.74983 -17.12370 -16.92943 -16.81912 -16.49418 -16.39003 -16.30901 -15.97759 -15.38041 -15.28156 -15.10178 -14.60461 -14.44852 -14.33134 -14.20058 -14.14104 -14.03111 -13.86730 -13.60693 -13.48849 -13.21953 -13.00017 -12.78594 -12.56061 -12.37966 -12.20898 -12.04365 -11.87824 -11.83869 -11.66128 -11.30733 -10.95729 -10.84455 -10.05840 -9.97543 -9.80350 -9.18774 -8.97093 -4.89411 0.36977 0.47205 1.07150 1.30399 1.59261 1.66439 1.84362 1.92816 2.14007 2.36102 2.52080 2.82756 3.35509 3.39550 3.49485 3.67375 3.74454 3.76412 3.80114 3.89002 3.95245 4.02672 4.21801 4.22508 4.27330 4.28692 4.36919 4.42859 4.48697 4.50695 4.53609 4.62319 4.67155 4.70575 4.74103 4.79255 4.79648 4.97558 5.01179 5.06432 5.22816 5.25186 5.28315 5.33343 5.46500 5.55587 5.59545 5.84736 5.97483 6.12349 6.36322 6.45490 6.53230 6.67384 7.26300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.061 4.061 3 Si 0.798 3.202 4 C -0.019 4.019 5 C -0.202 4.202 6 C -0.201 4.201 7 C 0.033 3.967 8 C -0.067 4.067 9 C 0.510 3.490 10 O -0.581 6.581 11 N -0.706 5.706 12 C 0.119 3.881 13 H 0.089 0.911 14 C -0.144 4.144 15 C -0.106 4.106 16 H 0.094 0.906 17 C 0.069 3.931 18 O -0.334 6.334 19 C 0.112 3.888 20 C -0.217 4.217 21 C -0.088 4.088 22 C -0.169 4.169 23 C -0.088 4.088 24 C -0.176 4.176 25 C -0.116 4.116 26 N -0.536 5.536 27 H 0.385 0.615 28 H 0.128 0.872 29 H -0.294 1.294 30 H -0.295 1.295 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.420 0.580 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.128 0.872 45 H 0.116 0.884 46 H 0.086 0.914 47 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 -7.830 0.663 9.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.170 4.170 3 Si 0.702 3.298 4 C -0.132 4.132 5 C -0.227 4.227 6 C -0.226 4.226 7 C -0.081 4.081 8 C -0.107 4.107 9 C 0.297 3.703 10 O -0.460 6.460 11 N -0.358 5.358 12 C 0.013 3.987 13 H 0.107 0.893 14 C -0.183 4.183 15 C -0.125 4.125 16 H 0.112 0.888 17 C -0.005 4.005 18 O -0.248 6.248 19 C 0.066 3.934 20 C -0.235 4.235 21 C -0.106 4.106 22 C -0.187 4.187 23 C -0.105 4.105 24 C -0.195 4.195 25 C -0.154 4.154 26 N -0.132 5.132 27 H 0.234 0.766 28 H 0.146 0.854 29 H -0.221 1.221 30 H -0.223 1.223 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.258 0.742 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.146 0.854 45 H 0.134 0.866 46 H 0.105 0.895 47 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.257 -6.533 1.225 7.893 hybrid contribution -1.351 -0.522 -0.463 1.520 sum 2.906 -7.055 0.762 7.668 Atomic orbital electron populations 1.86530 1.18928 1.80551 1.50178 1.24997 0.83031 1.12201 0.96756 0.93449 0.90057 0.70269 0.76029 1.20911 1.06102 0.85804 1.00428 1.20910 1.05071 1.00576 0.96133 1.20844 1.06978 0.93087 1.01641 1.19941 1.01221 0.97568 0.89350 1.20269 0.99946 0.94049 0.96414 1.21127 0.84742 0.82470 0.81970 1.90755 1.49947 1.34760 1.70563 1.45843 1.36098 1.17239 1.36666 1.22345 0.90592 0.98938 0.86790 0.89277 1.23552 0.99524 0.99561 0.95650 1.22314 0.99929 0.96504 0.93803 0.88776 1.22974 1.01694 0.97442 0.78428 1.86060 1.80552 1.43141 1.15053 1.19257 0.95516 0.90222 0.88362 1.21510 1.06186 0.94344 1.01474 1.21332 0.97005 0.99896 0.92333 1.21431 1.02495 0.97168 0.97597 1.21287 0.96191 0.93698 0.99365 1.20709 1.06441 1.02069 0.90233 1.23293 1.03504 0.96097 0.92528 1.41869 1.40870 1.11030 1.19393 0.76570 0.85382 1.22054 1.22292 0.83242 0.84250 0.83733 0.85126 0.74197 0.92752 0.88336 0.90437 0.90614 0.83757 0.83675 0.84092 0.83700 0.85355 0.86565 0.89529 0.74339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.87 12.88 -148.98 -1.92 -4.78 16 2 C -0.06 -0.10 3.08 71.24 0.22 0.12 16 3 Si 0.80 0.24 30.58 68.60 2.10 2.34 16 4 C -0.02 -0.07 6.51 41.08 0.27 0.19 16 5 C -0.20 -1.02 9.37 22.14 0.21 -0.81 16 6 C -0.20 -1.08 10.76 22.14 0.24 -0.85 16 7 C 0.03 0.08 5.66 41.08 0.23 0.32 16 8 C -0.07 0.35 6.24 29.10 0.18 0.53 16 9 C 0.51 0.64 7.82 87.66 0.69 1.32 16 10 O -0.58 -7.49 15.63 -3.05 -0.05 -7.54 16 11 N -0.71 3.55 5.35 -440.05 -2.36 1.20 16 12 C 0.12 -0.26 4.24 45.52 0.19 -0.06 16 13 H 0.09 0.36 7.46 -2.39 -0.02 0.34 16 14 C -0.14 0.23 7.43 31.12 0.23 0.46 16 15 C -0.11 0.35 4.01 -10.27 -0.04 0.31 16 16 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 17 C 0.07 -0.19 4.58 71.98 0.33 0.14 16 18 O -0.33 -1.60 10.14 -92.41 -0.94 -2.54 16 19 C 0.11 0.55 6.69 22.51 0.15 0.70 16 20 C -0.22 -0.28 9.04 22.37 0.20 -0.08 16 21 C -0.09 -0.02 10.04 22.25 0.22 0.21 16 22 C -0.17 -0.12 10.04 22.28 0.22 0.10 16 23 C -0.09 -0.17 10.04 22.25 0.22 0.05 16 24 C -0.18 -0.86 9.99 22.37 0.22 -0.64 16 25 C -0.12 0.88 7.39 31.12 0.23 1.11 16 26 N -0.54 -1.34 6.07 -171.11 -1.04 -2.38 16 27 H 0.39 0.67 8.70 -74.06 -0.64 0.03 16 28 H 0.13 -0.18 7.96 -2.38 -0.02 -0.20 16 29 H -0.29 -1.83 7.11 99.48 0.71 -1.12 16 30 H -0.30 -1.91 7.11 99.48 0.71 -1.20 16 31 H 0.15 0.28 6.22 -2.91 -0.02 0.26 16 32 H 0.14 0.49 8.06 -2.91 -0.02 0.46 16 33 H 0.14 -1.52 8.14 -2.39 -0.02 -1.54 16 34 H 0.13 -1.47 8.14 -2.39 -0.02 -1.49 16 35 H 0.42 -5.30 8.73 -92.70 -0.81 -6.11 16 36 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.10 -0.39 7.90 -2.39 -0.02 -0.41 16 38 H 0.08 -0.43 7.35 -2.39 -0.02 -0.45 16 39 H 0.08 -0.38 7.68 -2.39 -0.02 -0.40 16 40 H 0.14 -0.51 6.30 -2.91 -0.02 -0.53 16 41 H 0.15 -0.67 8.06 -2.91 -0.02 -0.70 16 42 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 43 H 0.15 -0.33 8.06 -2.91 -0.02 -0.36 16 44 H 0.13 0.50 8.06 -2.91 -0.02 0.48 16 45 H 0.12 -1.44 8.08 -2.38 -0.02 -1.46 16 46 H 0.09 -0.65 8.14 -2.38 -0.02 -0.67 16 47 H 0.42 -0.44 8.96 -92.71 -0.83 -1.27 16 Total: 0.00 -26.13 394.14 -1.21 -27.34 By element: Atomic # 1 Polarization: -15.52 SS G_CDS: -1.23 Total: -16.76 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 4.22 Total: 3.12 kcal Atomic # 7 Polarization: 2.22 SS G_CDS: -3.40 Total: -1.18 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -2.90 Total: -14.86 kcal Atomic # 14 Polarization: 0.24 SS G_CDS: 2.10 Total: 2.34 kcal Total: -26.13 -1.21 -27.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_14644196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.697 kcal (2) G-P(sol) polarization free energy of solvation -26.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds