Wall clock time and date at job start Tue Mar 9 2021 13:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86306 * 109.47304 * 2 1 4 4 C 1.50701 * 109.47330 * 120.00429 * 2 1 3 5 5 C 1.38244 * 119.96874 * 245.29178 * 4 2 1 6 6 C 1.38288 * 120.10735 * 180.25379 * 5 4 2 7 7 C 1.38126 * 120.05387 * 359.44975 * 6 5 4 8 8 C 1.38746 * 119.94556 * 0.28104 * 7 6 5 9 9 O 1.35900 * 120.05764 * 180.02562 * 8 7 6 10 10 C 1.42902 * 116.99943 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.47331 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.46881 * 180.02562 * 11 10 9 13 13 O 1.21276 * 120.00130 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99544 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00192 * 179.97438 * 14 12 11 16 16 H 1.09004 * 112.84722 * 23.80181 * 15 14 12 17 17 C 1.53781 * 113.61951 * 154.99326 * 15 14 12 18 18 C 1.53781 * 87.08131 * 139.98396 * 17 15 14 19 19 H 1.08998 * 113.61602 * 89.11524 * 18 17 15 20 20 C 1.53004 * 113.61475 * 219.94154 * 18 17 15 21 21 O 1.42901 * 109.46866 * 184.99920 * 20 18 17 22 22 C 1.35903 * 116.99604 * 179.97438 * 21 20 18 23 23 C 1.38723 * 120.05676 * 359.73282 * 22 21 20 24 24 C 1.38152 * 119.94471 * 179.74109 * 23 22 21 25 25 C 1.38266 * 120.05170 * 0.50317 * 24 23 22 26 26 C 1.38268 * 120.11201 * 359.76884 * 25 24 23 27 27 C 1.38142 * 120.05810 * 359.97438 * 26 25 24 28 28 C 1.53772 * 113.61605 * 252.49840 * 15 14 12 29 29 C 1.38166 * 119.97212 * 64.99802 * 4 2 1 30 30 H 0.96701 * 114.00473 * 59.99672 * 1 2 3 31 31 H 1.09007 * 109.46933 * 240.00527 * 2 1 3 32 32 H 1.48500 * 109.99935 * 298.68815 * 3 2 1 33 33 H 1.48495 * 109.99306 * 60.00323 * 3 2 1 34 34 H 1.07993 * 119.94966 * 0.02562 * 5 4 2 35 35 H 1.08002 * 119.97455 * 179.73146 * 6 5 4 36 36 H 1.08000 * 120.02655 * 180.29782 * 7 6 5 37 37 H 1.09002 * 109.46947 * 300.00698 * 10 9 8 38 38 H 1.08998 * 109.47276 * 60.00138 * 10 9 8 39 39 H 1.08997 * 109.46741 * 300.00019 * 11 10 9 40 40 H 1.08992 * 109.46839 * 60.00090 * 11 10 9 41 41 H 0.97009 * 120.00706 * 359.97438 * 14 12 11 42 42 H 1.08990 * 113.61918 * 254.53391 * 17 15 14 43 43 H 1.09009 * 113.60881 * 25.35467 * 17 15 14 44 44 H 1.09001 * 109.46598 * 305.00084 * 20 18 17 45 45 H 1.08998 * 109.47536 * 64.99677 * 20 18 17 46 46 H 1.07998 * 120.02930 * 359.97438 * 23 22 21 47 47 H 1.07996 * 119.97112 * 180.22840 * 24 23 22 48 48 H 1.07998 * 119.94322 * 179.74155 * 25 24 23 49 49 H 1.08002 * 119.96929 * 179.97438 * 26 25 24 50 50 H 1.07996 * 120.03147 * 179.97438 * 27 26 25 51 51 H 1.09001 * 113.61546 * 334.56311 * 28 15 14 52 52 H 1.09000 * 113.62236 * 105.46563 * 28 15 14 53 53 H 1.08007 * 120.02833 * 0.04906 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.6335 -0.0105 2.1937 6 6 3.1003 -0.6607 3.3214 7 6 2.8562 -2.0093 3.4932 8 6 2.1469 -2.7129 2.5304 9 8 1.9049 -4.0397 2.6974 10 6 2.4107 -4.6466 3.8882 11 6 2.0433 -6.1318 3.8994 12 6 2.5763 -6.7716 5.1555 13 8 3.1899 -6.1054 5.9620 14 7 2.3719 -8.0843 5.3819 15 6 2.8903 -8.7065 6.6027 16 1 3.0424 -7.9909 7.4108 17 6 2.1147 -9.9634 7.0309 18 6 3.4746 -10.5835 7.3930 19 1 3.7877 -10.3817 8.4173 20 6 3.5944 -12.0613 7.0152 21 8 4.8392 -12.5756 7.4927 22 6 5.1040 -13.8842 7.2392 23 6 4.1824 -14.6588 6.5500 24 6 4.4563 -15.9874 6.2888 25 6 5.6434 -16.5480 6.7228 26 6 6.5612 -15.7795 7.4149 27 6 6.2943 -14.4491 7.6739 28 6 4.0962 -9.6292 6.3595 29 6 1.6845 -2.0596 1.3976 30 1 -0.3934 0.4417 -0.7650 31 1 1.7922 -0.5138 -0.8901 32 1 1.5878 2.4586 -1.2242 33 1 1.5615 2.4677 1.2085 34 1 2.8209 1.0451 2.0637 35 1 3.6524 -0.1126 4.0706 36 1 3.2168 -2.5156 4.3764 37 1 3.4951 -4.5406 3.9176 38 1 1.9742 -4.1574 4.7590 39 1 0.9590 -6.2380 3.8698 40 1 2.4802 -6.6206 3.0287 41 1 1.8814 -8.6173 4.7367 42 1 1.4648 -9.8036 7.8912 43 1 1.6094 -10.4667 6.2065 44 1 2.7737 -12.6192 7.4662 45 1 3.5508 -12.1639 5.9309 46 1 3.2531 -14.2225 6.2145 47 1 3.7407 -16.5899 5.7491 48 1 5.8539 -17.5879 6.5214 49 1 7.4875 -16.2198 7.7532 50 1 7.0113 -13.8494 8.2149 51 1 4.1339 -10.0419 5.3514 52 1 5.0461 -9.1997 6.6778 53 1 1.1324 -2.6052 0.6465 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_4549614.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:33 Heat of formation + Delta-G solvation = -60.788920 kcal Electronic energy + Delta-G solvation = -32527.671148 eV Core-core repulsion = 27911.498528 eV Total energy + Delta-G solvation = -4616.172620 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.56504 -41.26903 -40.86803 -39.64433 -39.01843 -38.09690 -37.45267 -34.76684 -33.25889 -32.62024 -32.01585 -31.11366 -30.79341 -29.08115 -27.07257 -26.75179 -25.74435 -24.10904 -23.68278 -23.34493 -22.55954 -21.87749 -21.52382 -20.59761 -19.24921 -19.09563 -18.57680 -17.96362 -17.70551 -17.49600 -17.24606 -17.10814 -16.90463 -16.89153 -16.46670 -16.20421 -15.89240 -15.80084 -15.62912 -15.31278 -14.89719 -14.56478 -14.46706 -14.38792 -14.33186 -14.22320 -13.98606 -13.88546 -13.51466 -13.48699 -13.28297 -13.01926 -12.96398 -12.92150 -12.56590 -12.40513 -12.33839 -12.04687 -11.99230 -11.84126 -11.82879 -11.67869 -11.66210 -11.30811 -11.02359 -10.54183 -10.10633 -9.97550 -9.94301 -9.29222 -9.18727 -4.91300 0.17639 0.36978 0.37398 0.47234 1.27901 1.48440 1.60656 1.69453 1.94989 2.16872 2.51167 2.60850 2.82770 3.37451 3.39386 3.49290 3.54608 3.73927 3.74095 3.77572 3.82874 3.88237 3.89500 3.95071 3.97918 4.08769 4.21026 4.22612 4.23967 4.26378 4.28675 4.33555 4.37774 4.47171 4.48751 4.53804 4.61470 4.66269 4.67450 4.70778 4.74312 4.75344 4.79949 4.95895 4.97351 5.01833 5.06489 5.21072 5.23239 5.33326 5.35849 5.43723 5.46513 5.52452 5.59585 5.67432 5.84701 6.30722 6.44833 6.46233 6.58030 7.14458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.090 4.090 3 Si 0.771 3.229 4 C -0.047 4.047 5 C -0.161 4.161 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.117 3.883 9 O -0.323 6.323 10 C 0.073 3.927 11 C -0.133 4.133 12 C 0.520 3.480 13 O -0.585 6.585 14 N -0.704 5.704 15 C 0.118 3.882 16 H 0.097 0.903 17 C -0.118 4.118 18 C -0.106 4.106 19 H 0.097 0.903 20 C 0.069 3.931 21 O -0.333 6.333 22 C 0.112 3.888 23 C -0.217 4.217 24 C -0.088 4.088 25 C -0.169 4.169 26 C -0.087 4.087 27 C -0.175 4.175 28 C -0.144 4.144 29 C -0.141 4.141 30 H 0.396 0.604 31 H 0.097 0.903 32 H -0.283 1.283 33 H -0.297 1.297 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.138 0.862 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.420 0.580 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.144 0.856 47 H 0.145 0.855 48 H 0.141 0.859 49 H 0.146 0.854 50 H 0.130 0.870 51 H 0.096 0.904 52 H 0.058 0.942 53 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 -4.046 -3.553 5.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.198 4.198 3 Si 0.676 3.324 4 C -0.047 4.047 5 C -0.178 4.178 6 C -0.093 4.093 7 C -0.230 4.230 8 C 0.072 3.928 9 O -0.237 6.237 10 C -0.002 4.002 11 C -0.172 4.172 12 C 0.308 3.692 13 O -0.465 6.465 14 N -0.355 5.355 15 C 0.012 3.988 16 H 0.115 0.885 17 C -0.156 4.156 18 C -0.125 4.125 19 H 0.115 0.885 20 C -0.006 4.006 21 O -0.247 6.247 22 C 0.066 3.934 23 C -0.236 4.236 24 C -0.106 4.106 25 C -0.187 4.187 26 C -0.105 4.105 27 C -0.194 4.194 28 C -0.183 4.183 29 C -0.160 4.160 30 H 0.246 0.754 31 H 0.114 0.886 32 H -0.210 1.210 33 H -0.225 1.225 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.156 0.844 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.258 0.742 42 H 0.107 0.893 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.162 0.838 47 H 0.163 0.837 48 H 0.159 0.841 49 H 0.163 0.837 50 H 0.148 0.852 51 H 0.115 0.885 52 H 0.076 0.924 53 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.477 -3.061 -2.468 3.961 hybrid contribution -1.256 -0.355 -0.412 1.369 sum -1.734 -3.416 -2.880 4.793 Atomic orbital electron populations 1.86551 1.18428 1.80796 1.51085 1.25102 0.84177 1.12268 0.98212 0.93968 0.90355 0.71654 0.76467 1.19285 0.97024 0.92776 0.95587 1.21168 1.01450 1.00506 0.94690 1.21227 0.97302 0.93493 0.97307 1.21551 1.04282 0.96508 1.00657 1.19107 0.95732 0.83016 0.94925 1.85945 1.74696 1.20210 1.42893 1.22455 0.99257 0.93130 0.85405 1.21445 1.05442 0.93390 0.96943 1.20665 0.78588 0.82557 0.87435 1.90737 1.42984 1.63688 1.49102 1.45825 1.57182 1.09002 1.23529 1.22434 0.95168 0.93393 0.87760 0.88537 1.23300 0.95360 0.93684 1.03232 1.22315 0.98219 0.91428 1.00515 0.88473 1.22976 0.84029 0.94032 0.99566 1.86058 1.40386 1.22739 1.75515 1.19255 0.94886 0.83464 0.95753 1.21511 1.01033 0.96012 1.05038 1.21329 0.97285 0.94394 0.97599 1.21430 0.94944 1.01316 1.01005 1.21291 1.00032 0.92588 0.96608 1.20712 0.96777 0.96461 1.05447 1.23555 0.98081 0.96612 1.00075 1.20344 1.03682 0.94377 0.97607 0.75377 0.88554 1.21034 1.22494 0.83891 0.82870 0.84404 0.91555 0.91871 0.85542 0.85433 0.74190 0.89324 0.86806 0.90636 0.90598 0.83827 0.83741 0.84116 0.83662 0.85247 0.88545 0.92350 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.11 12.81 -148.98 -1.91 -4.02 16 2 C -0.09 -0.09 2.79 71.24 0.20 0.11 16 3 Si 0.77 -1.00 29.86 68.60 2.05 1.05 16 4 C -0.05 -0.23 5.38 -19.88 -0.11 -0.34 16 5 C -0.16 -0.50 8.67 22.28 0.19 -0.31 16 6 C -0.08 -0.20 10.04 22.26 0.22 0.02 16 7 C -0.21 -1.06 9.04 22.36 0.20 -0.85 16 8 C 0.12 0.83 6.69 22.50 0.15 0.98 16 9 O -0.32 -1.82 10.14 -92.42 -0.94 -2.76 16 10 C 0.07 0.16 4.03 71.98 0.29 0.45 16 11 C -0.13 0.49 6.07 29.85 0.18 0.67 16 12 C 0.52 0.42 7.83 87.66 0.69 1.10 16 13 O -0.58 -6.03 15.58 -3.02 -0.05 -6.08 16 14 N -0.70 3.45 5.35 -440.05 -2.36 1.09 16 15 C 0.12 -0.34 4.24 45.51 0.19 -0.15 16 16 H 0.10 0.22 7.46 -2.39 -0.02 0.20 16 17 C -0.12 0.92 7.39 31.12 0.23 1.15 16 18 C -0.11 0.41 4.01 -10.26 -0.04 0.37 16 19 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 20 C 0.07 -0.20 4.58 71.98 0.33 0.13 16 21 O -0.33 -1.49 10.14 -92.46 -0.94 -2.43 16 22 C 0.11 0.54 6.69 22.51 0.15 0.69 16 23 C -0.22 -0.31 9.04 22.37 0.20 -0.11 16 24 C -0.09 -0.03 10.04 22.26 0.22 0.19 16 25 C -0.17 -0.12 10.04 22.28 0.22 0.10 16 26 C -0.09 -0.16 10.04 22.25 0.22 0.06 16 27 C -0.18 -0.82 9.99 22.37 0.22 -0.60 16 28 C -0.14 0.33 7.43 31.12 0.23 0.56 16 29 C -0.14 -0.98 9.62 22.36 0.22 -0.77 16 30 H 0.40 -1.89 8.74 -74.06 -0.65 -2.54 16 31 H 0.10 -0.29 7.96 -2.38 -0.02 -0.31 16 32 H -0.28 -0.64 7.11 99.48 0.71 0.06 16 33 H -0.30 -1.72 7.04 99.48 0.70 -1.02 16 34 H 0.14 -0.11 4.86 -2.91 -0.01 -0.13 16 35 H 0.15 -0.38 8.06 -2.91 -0.02 -0.41 16 36 H 0.14 0.43 6.30 -2.91 -0.02 0.41 16 37 H 0.07 0.22 7.62 -2.39 -0.02 0.20 16 38 H 0.06 0.24 7.62 -2.39 -0.02 0.23 16 39 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H 0.42 -4.90 8.73 -92.70 -0.81 -5.71 16 42 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H 0.11 -1.38 8.08 -2.38 -0.02 -1.40 16 44 H 0.08 -0.38 7.65 -2.39 -0.02 -0.40 16 45 H 0.08 -0.41 7.38 -2.39 -0.02 -0.43 16 46 H 0.14 -0.47 6.30 -2.91 -0.02 -0.49 16 47 H 0.14 -0.63 8.06 -2.91 -0.02 -0.66 16 48 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 49 H 0.15 -0.36 8.06 -2.91 -0.02 -0.38 16 50 H 0.13 0.45 8.06 -2.91 -0.02 0.43 16 51 H 0.10 -0.40 7.90 -2.39 -0.02 -0.42 16 52 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 53 H 0.13 0.81 8.06 -2.91 -0.02 0.78 16 Total: 0.00 -24.67 437.33 -0.20 -24.87 By element: Atomic # 1 Polarization: -14.71 SS G_CDS: -0.49 Total: -15.20 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 4.42 Total: 3.48 kcal Atomic # 7 Polarization: 3.45 SS G_CDS: -2.36 Total: 1.09 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -3.83 Total: -15.29 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: 2.05 Total: 1.05 kcal Total: -24.67 -0.20 -24.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_4549614.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.922 kcal (2) G-P(sol) polarization free energy of solvation -24.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds