Wall clock time and date at job start Tue Mar 9 2021 13:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33813 * 122.44692 * 2 1 4 4 C 1.50704 * 124.52616 * 0.02562 * 3 2 1 5 5 O 1.42899 * 109.46741 * 29.99398 * 4 3 2 6 6 Si 1.86295 * 109.47372 * 149.99661 * 4 3 2 7 7 S 1.70614 * 110.95494 * 179.78195 * 3 2 1 8 8 C 1.75827 * 91.56363 * 0.30725 * 7 3 2 9 9 C 1.46579 * 125.46336 * 179.97438 * 8 7 3 10 10 O 1.21706 * 120.00395 * 179.69622 * 9 8 7 11 11 N 1.34781 * 119.99887 * 359.68578 * 9 8 7 12 12 C 1.46493 * 120.00279 * 180.02562 * 11 9 8 13 13 H 1.09003 * 112.84820 * 336.19884 * 12 11 9 14 14 C 1.53781 * 113.61563 * 107.50461 * 12 11 9 15 15 C 1.54049 * 87.08031 * 139.97721 * 14 12 11 16 16 H 1.09000 * 113.61076 * 89.06984 * 15 14 12 17 17 C 1.52990 * 113.70090 * 220.05426 * 15 14 12 18 18 O 1.42903 * 109.47168 * 272.42623 * 17 15 14 19 19 C 1.35901 * 117.00064 * 179.97438 * 18 17 15 20 20 C 1.38730 * 120.05717 * 359.73078 * 19 18 17 21 21 C 1.38144 * 119.94637 * 179.70222 * 20 19 18 22 22 C 1.38273 * 120.05126 * 0.58621 * 21 20 19 23 23 C 1.38263 * 120.11228 * 359.68156 * 22 21 20 24 24 C 1.38147 * 120.05583 * 0.02608 * 23 22 21 25 25 C 1.53781 * 113.61552 * 205.00255 * 12 11 9 26 26 C 1.36651 * 109.08297 * 359.69713 * 8 7 3 27 27 H 1.09003 * 109.47245 * 270.00079 * 1 2 3 28 28 H 1.09006 * 109.46963 * 30.00503 * 1 2 3 29 29 H 1.09004 * 109.46587 * 150.00079 * 1 2 3 30 30 H 1.08997 * 109.46954 * 270.00226 * 4 3 2 31 31 H 0.96704 * 114.00153 * 60.01065 * 5 4 3 32 32 H 1.48508 * 109.99954 * 179.97438 * 6 4 3 33 33 H 1.48496 * 110.00277 * 301.32158 * 6 4 3 34 34 H 0.97006 * 119.99341 * 0.02562 * 11 9 8 35 35 H 1.09005 * 113.61471 * 254.53304 * 14 12 11 36 36 H 1.08996 * 113.61178 * 25.34646 * 14 12 11 37 37 H 1.09007 * 109.47036 * 32.41747 * 17 15 14 38 38 H 1.08994 * 109.47734 * 152.42153 * 17 15 14 39 39 H 1.08000 * 120.02791 * 359.97438 * 20 19 18 40 40 H 1.07995 * 119.97878 * 180.31501 * 21 20 19 41 41 H 1.07994 * 119.94118 * 179.70737 * 22 21 20 42 42 H 1.07997 * 119.97226 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02560 * 179.97438 * 24 23 22 44 44 H 1.09002 * 113.61445 * 334.56837 * 25 12 11 45 45 H 1.09002 * 113.61408 * 105.38567 * 25 12 11 46 46 H 1.07997 * 123.35647 * 180.25495 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5162 0.0006 5 8 0.3756 2.4979 0.6746 6 14 2.7927 3.6825 0.8787 7 16 3.8969 0.7893 0.0061 8 6 3.5938 -0.9426 -0.0008 9 6 4.6232 -1.9861 -0.0003 10 8 4.3002 -3.1596 0.0002 11 7 5.9274 -1.6462 -0.0006 12 6 6.9562 -2.6890 -0.0006 13 1 6.5993 -3.6357 0.4050 14 6 7.6904 -2.8301 -1.3445 15 6 8.9818 -3.0283 -0.5284 16 1 9.1784 -4.0683 -0.2679 17 6 10.2011 -2.3233 -1.1259 18 8 10.8334 -3.1863 -2.0733 19 6 11.9403 -2.7083 -2.7006 20 6 12.4049 -1.4329 -2.4143 21 6 13.5338 -0.9517 -3.0487 22 6 14.1935 -1.7356 -3.9772 23 6 13.7292 -3.0050 -4.2684 24 6 12.6042 -3.4930 -3.6323 25 6 8.2980 -2.2306 0.5946 26 6 2.2447 -1.1600 -0.0004 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8901 -0.5139 30 1 1.4930 2.8508 -1.0270 31 1 0.4266 2.2093 1.5961 32 1 2.2230 5.0540 0.8855 33 1 3.0203 3.2196 2.2712 34 1 6.1847 -0.7109 -0.0007 35 1 7.3938 -3.7112 -1.9137 36 1 7.6856 -1.9187 -1.9423 37 1 9.8832 -1.4075 -1.6244 38 1 10.9053 -2.0786 -0.3308 39 1 11.8871 -0.8183 -1.6928 40 1 13.8989 0.0392 -2.8224 41 1 15.0731 -1.3558 -4.4756 42 1 14.2465 -3.6155 -4.9937 43 1 12.2417 -4.4845 -3.8604 44 1 8.4607 -1.1549 0.5276 45 1 8.4915 -2.6266 1.5916 46 1 1.8020 -2.1451 -0.0001 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_6739946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:26 Heat of formation + Delta-G solvation = -17.403610 kcal Electronic energy + Delta-G solvation = -28040.691878 eV Core-core repulsion = 23989.772644 eV Total energy + Delta-G solvation = -4050.919234 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.48768 -40.94088 -40.12003 -39.36067 -38.07683 -37.40970 -34.83633 -32.22951 -31.95167 -31.00167 -30.24932 -29.15987 -26.76551 -26.65013 -24.83647 -23.94446 -23.29421 -22.49181 -21.81581 -20.80433 -20.15823 -19.38250 -19.06785 -18.02659 -17.43895 -17.32441 -16.92378 -16.89551 -16.58541 -16.50763 -16.20716 -15.88014 -15.84874 -15.34716 -15.21968 -14.61356 -14.47902 -14.36393 -14.26778 -14.05192 -13.91692 -13.55503 -13.47087 -13.29615 -13.14535 -13.03742 -12.95614 -12.56452 -12.45019 -12.35267 -12.22964 -12.03998 -11.85741 -11.81999 -11.63566 -11.32679 -11.19999 -10.88924 -10.23262 -9.94588 -9.67982 -9.37772 -9.15549 -5.12343 -0.67995 0.29843 0.39963 0.50201 0.69991 1.06417 1.31201 1.54795 1.88164 1.94406 2.03498 2.26244 2.85711 3.22990 3.38620 3.50422 3.55308 3.69585 3.75592 3.79758 3.91944 3.98983 4.08836 4.25153 4.27517 4.28476 4.31879 4.38606 4.49361 4.51447 4.55715 4.56761 4.68769 4.70002 4.74522 4.80530 4.81279 4.86552 4.96385 4.98784 5.03172 5.09300 5.17004 5.36281 5.36981 5.42380 5.48775 5.49773 5.62393 5.87584 6.33420 6.35811 6.48943 7.00601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.110 4.110 3 C -0.238 4.238 4 C -0.039 4.039 5 O -0.530 6.530 6 Si 0.740 3.260 7 S 0.271 5.729 8 C -0.289 4.289 9 C 0.590 3.410 10 O -0.574 6.574 11 N -0.702 5.702 12 C 0.116 3.884 13 H 0.100 0.900 14 C -0.145 4.145 15 C -0.103 4.103 16 H 0.099 0.901 17 C 0.068 3.932 18 O -0.332 6.332 19 C 0.112 3.888 20 C -0.216 4.216 21 C -0.088 4.088 22 C -0.170 4.170 23 C -0.088 4.088 24 C -0.176 4.176 25 C -0.118 4.118 26 C -0.061 4.061 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.141 0.859 31 H 0.387 0.613 32 H -0.276 1.276 33 H -0.273 1.273 34 H 0.413 0.587 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.129 0.871 44 H 0.116 0.884 45 H 0.092 0.908 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.316 6.785 0.667 8.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.358 4.358 4 C -0.150 4.150 5 O -0.338 6.338 6 Si 0.641 3.359 7 S 0.540 5.460 8 C -0.408 4.408 9 C 0.377 3.623 10 O -0.455 6.455 11 N -0.352 5.352 12 C 0.011 3.989 13 H 0.118 0.882 14 C -0.184 4.184 15 C -0.122 4.122 16 H 0.117 0.883 17 C -0.006 4.006 18 O -0.247 6.247 19 C 0.067 3.933 20 C -0.235 4.235 21 C -0.106 4.106 22 C -0.188 4.188 23 C -0.106 4.106 24 C -0.194 4.194 25 C -0.155 4.155 26 C -0.095 4.095 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.158 0.842 31 H 0.237 0.763 32 H -0.202 1.202 33 H -0.199 1.199 34 H 0.251 0.749 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.147 0.853 44 H 0.134 0.866 45 H 0.110 0.890 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.238 7.441 0.769 9.133 hybrid contribution -2.310 -1.317 0.674 2.743 sum 2.928 6.125 1.442 6.940 Atomic orbital electron populations 1.20608 0.88346 1.03127 1.02993 1.18740 0.98828 0.90570 1.04088 1.24694 0.99673 1.00899 1.10508 1.24690 0.91198 0.94620 1.04488 1.86622 1.28062 1.89211 1.29951 0.94692 0.83293 0.76652 0.81234 1.82270 1.01386 0.95221 1.67104 1.24650 0.97616 0.98831 1.19741 1.17248 0.82725 0.87038 0.75275 1.90829 1.82420 1.20224 1.52068 1.45738 1.04348 1.10856 1.74300 1.22552 0.86228 0.92209 0.97885 0.88238 1.23625 0.95021 1.02975 0.96773 1.22329 0.91737 1.01156 0.96968 0.88297 1.22977 0.93975 0.92941 0.90742 1.86058 1.39132 1.44647 1.54835 1.19249 0.87355 0.93269 0.93436 1.21519 1.00796 0.95693 1.05475 1.21329 0.93983 1.00464 0.94774 1.21426 1.02031 0.95011 1.00300 1.21280 0.94733 0.96198 0.98398 1.20701 0.98185 1.01202 0.99339 1.23323 0.91365 1.02259 0.98599 1.20752 0.91498 1.00146 0.97115 0.90631 0.89967 0.92054 0.84153 0.76251 1.20186 1.19862 0.74945 0.92216 0.88407 0.90424 0.90429 0.83663 0.83687 0.84179 0.83780 0.85348 0.86606 0.88975 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.03 8.67 71.24 0.62 0.65 16 2 C -0.11 -0.14 5.75 -21.05 -0.12 -0.26 16 3 C -0.24 0.48 5.54 24.68 0.14 0.61 16 4 C -0.04 0.17 2.76 71.24 0.20 0.36 16 5 O -0.53 1.06 9.85 -148.98 -1.47 -0.41 16 6 Si 0.74 -3.93 31.30 68.60 2.15 -1.78 16 7 S 0.27 -1.26 19.78 -56.49 -1.12 -2.38 16 8 C -0.29 -0.89 6.45 24.08 0.16 -0.73 16 9 C 0.59 3.74 7.78 86.42 0.67 4.41 16 10 O -0.57 -8.81 16.44 -4.37 -0.07 -8.88 16 11 N -0.70 0.80 5.35 -444.09 -2.38 -1.58 16 12 C 0.12 -0.15 4.24 45.52 0.19 0.04 16 13 H 0.10 0.36 7.46 -2.39 -0.02 0.34 16 14 C -0.15 0.22 7.44 31.21 0.23 0.45 16 15 C -0.10 0.39 4.02 -10.18 -0.04 0.35 16 16 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 17 C 0.07 -0.23 4.58 71.98 0.33 0.10 16 18 O -0.33 -1.38 10.14 -92.43 -0.94 -2.31 16 19 C 0.11 0.50 6.69 22.51 0.15 0.65 16 20 C -0.22 -0.19 9.04 22.37 0.20 0.01 16 21 C -0.09 0.01 10.04 22.26 0.22 0.23 16 22 C -0.17 -0.09 10.04 22.28 0.22 0.13 16 23 C -0.09 -0.16 10.04 22.25 0.22 0.06 16 24 C -0.18 -0.80 9.99 22.37 0.22 -0.58 16 25 C -0.12 0.88 7.39 31.12 0.23 1.11 16 26 C -0.06 -0.27 9.80 21.72 0.21 -0.06 16 27 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.08 0.02 6.42 -2.38 -0.02 0.01 16 29 H 0.06 0.00 8.13 -2.38 -0.02 -0.02 16 30 H 0.14 -0.90 7.96 -2.39 -0.02 -0.92 16 31 H 0.39 -2.54 8.66 -74.05 -0.64 -3.19 16 32 H -0.28 -0.37 7.11 99.48 0.71 0.34 16 33 H -0.27 0.21 7.11 99.48 0.71 0.91 16 34 H 0.41 -3.09 7.84 -92.70 -0.73 -3.82 16 35 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 36 H 0.10 -0.34 7.91 -2.39 -0.02 -0.36 16 37 H 0.08 -0.47 7.36 -2.38 -0.02 -0.49 16 38 H 0.08 -0.44 7.67 -2.39 -0.02 -0.46 16 39 H 0.15 -0.58 6.30 -2.91 -0.02 -0.60 16 40 H 0.15 -0.71 8.06 -2.91 -0.02 -0.73 16 41 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 42 H 0.14 -0.34 8.06 -2.91 -0.02 -0.37 16 43 H 0.13 0.45 8.06 -2.91 -0.02 0.43 16 44 H 0.12 -1.40 8.08 -2.39 -0.02 -1.42 16 45 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 46 H 0.14 0.87 8.06 -2.91 -0.02 0.84 16 Total: 0.00 -20.73 394.00 -0.07 -20.80 By element: Atomic # 1 Polarization: -10.70 SS G_CDS: -0.31 Total: -11.02 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 4.06 Total: 7.55 kcal Atomic # 7 Polarization: 0.80 SS G_CDS: -2.38 Total: -1.58 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -2.48 Total: -11.61 kcal Atomic # 14 Polarization: -3.93 SS G_CDS: 2.15 Total: -1.78 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -1.12 Total: -2.38 kcal Total: -20.73 -0.07 -20.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_6739946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.400 kcal (2) G-P(sol) polarization free energy of solvation -20.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds