Wall clock time and date at job start Tue Mar 9 2021 13:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86302 * 109.47271 * 2 1 4 4 C 1.50700 * 109.46830 * 239.99986 * 2 1 3 5 5 C 1.32769 * 124.71438 * 299.99648 * 4 2 1 6 6 C 1.44424 * 113.08411 * 179.97438 * 5 4 2 7 7 C 1.47191 * 123.45966 * 179.97438 * 6 5 4 8 8 O 1.21640 * 120.00195 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99797 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99796 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.90805 * 23.75081 * 10 9 7 12 12 C 1.53788 * 113.61415 * 155.00213 * 10 9 7 13 13 C 1.53778 * 87.08027 * 139.97976 * 12 10 9 14 14 H 1.09001 * 113.61601 * 89.20053 * 13 12 10 15 15 C 1.52997 * 113.61214 * 220.01562 * 13 12 10 16 16 O 1.42905 * 109.47264 * 183.47271 * 15 13 12 17 17 C 1.35897 * 117.00093 * 180.02562 * 16 15 13 18 18 C 1.38737 * 120.05547 * 359.72645 * 17 16 15 19 19 C 1.38146 * 119.93882 * 179.69816 * 18 17 16 20 20 C 1.38268 * 120.05855 * 0.60059 * 19 18 17 21 21 C 1.38265 * 120.10736 * 359.67435 * 20 19 18 22 22 C 1.38141 * 120.06229 * 0.02578 * 21 20 19 23 23 C 1.53778 * 87.17681 * 334.60922 * 13 12 10 24 24 C 1.36002 * 113.07996 * 0.24804 * 6 5 4 25 25 S 1.70451 * 110.81763 * 359.62504 * 24 6 5 26 26 H 0.96706 * 113.99704 * 60.00032 * 1 2 3 27 27 H 1.09002 * 109.46633 * 120.00403 * 2 1 3 28 28 H 1.48499 * 109.99800 * 59.99751 * 3 2 1 29 29 H 1.48502 * 109.99776 * 181.31474 * 3 2 1 30 30 H 1.08001 * 123.45813 * 359.95029 * 5 4 2 31 31 H 0.96998 * 120.00789 * 359.97438 * 9 7 6 32 32 H 1.09000 * 113.61564 * 25.42886 * 12 10 9 33 33 H 1.09003 * 113.68508 * 254.53836 * 12 10 9 34 34 H 1.09001 * 109.47289 * 63.47104 * 15 13 12 35 35 H 1.09004 * 109.47261 * 303.47360 * 15 13 12 36 36 H 1.08000 * 120.02659 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.97033 * 180.27263 * 19 18 17 38 38 H 1.07994 * 119.94444 * 179.70085 * 20 19 18 39 39 H 1.08004 * 119.96780 * 180.02562 * 21 20 19 40 40 H 1.07997 * 120.03246 * 179.97438 * 22 21 20 41 41 H 1.08991 * 113.61518 * 139.93842 * 23 13 12 42 42 H 1.09002 * 113.61130 * 270.84878 * 23 13 12 43 43 H 1.07997 * 124.59532 * 179.73597 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6689 -1.9763 -1.5327 6 6 2.2771 -2.4004 -2.7721 7 6 2.1351 -3.7579 -3.3230 8 8 1.4778 -4.5903 -2.7274 9 7 2.7341 -4.0789 -4.4869 10 6 2.5932 -5.4302 -5.0349 11 1 1.6993 -5.9418 -4.6778 12 6 2.7738 -5.4982 -6.5606 13 6 3.5493 -6.8062 -6.3316 14 1 2.9171 -7.6942 -6.3305 15 6 4.7798 -6.9542 -7.2286 16 8 5.3846 -8.2289 -7.0012 17 6 6.4978 -8.5214 -7.7238 18 6 6.9945 -7.6028 -8.6371 19 6 8.1299 -7.9000 -9.3659 20 6 8.7639 -9.1168 -9.1946 21 6 8.2674 -10.0362 -8.2891 22 6 7.1360 -9.7414 -7.5535 23 6 3.8730 -6.2788 -4.9238 24 6 2.9995 -1.4183 -3.3749 25 16 2.9440 0.0209 -2.4634 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5139 0.8900 28 1 1.5615 2.4679 1.2085 29 1 3.5347 1.7702 -0.0320 30 1 1.0631 -2.6227 -0.9150 31 1 3.2585 -3.4153 -4.9617 32 1 3.3867 -4.6921 -6.9641 33 1 1.8402 -5.6339 -7.1065 34 1 5.4958 -6.1658 -6.9964 35 1 4.4794 -6.8758 -8.2735 36 1 6.4966 -6.6544 -8.7750 37 1 8.5196 -7.1835 -10.0738 38 1 9.6485 -9.3492 -9.7688 39 1 8.7647 -10.9858 -8.1569 40 1 6.7484 -10.4601 -6.8466 41 1 3.8248 -7.0439 -4.1491 42 1 4.7870 -5.6865 -4.8790 43 1 3.5342 -1.5340 -4.3060 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16536076_6894386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:32 Heat of formation + Delta-G solvation = -18.833996 kcal Electronic energy + Delta-G solvation = -25936.542975 eV Core-core repulsion = 22041.099334 eV Total energy + Delta-G solvation = -3895.443642 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.51910 -40.92821 -39.77967 -38.71326 -38.06428 -37.06793 -34.73986 -32.07108 -31.80321 -30.98482 -29.14090 -27.01475 -26.88930 -26.05917 -24.13261 -23.32814 -22.61211 -21.86563 -21.10280 -20.26826 -19.21743 -18.96821 -18.13259 -17.77584 -17.43634 -16.96126 -16.90279 -16.44859 -16.40788 -16.14787 -15.79671 -15.60309 -15.35401 -15.18511 -14.54800 -14.37586 -14.27377 -14.16315 -14.11507 -13.70664 -13.67454 -13.61946 -13.27738 -13.03041 -12.72401 -12.58609 -12.42746 -12.28553 -12.08410 -11.94523 -11.89207 -11.73279 -11.37691 -10.89397 -10.65012 -10.14302 -10.02641 -9.94694 -9.54225 -9.14551 -5.23715 -0.40722 0.29147 0.39712 0.51626 0.64272 0.88020 1.15024 1.51746 1.83536 1.98972 2.22251 2.32898 2.86115 3.26473 3.30332 3.37602 3.53566 3.64669 3.66478 3.79279 3.86266 3.90217 3.93431 4.12004 4.17738 4.20821 4.24237 4.26987 4.37212 4.46300 4.49170 4.52006 4.59217 4.66219 4.67609 4.74139 4.85532 4.95424 5.00211 5.06263 5.15201 5.18670 5.35509 5.46233 5.47580 5.61718 5.83094 6.41316 6.43785 6.46295 7.18257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.026 4.026 3 Si 0.654 3.346 4 C -0.244 4.244 5 C -0.053 4.053 6 C -0.156 4.156 7 C 0.579 3.421 8 O -0.530 6.530 9 N -0.717 5.717 10 C 0.125 3.875 11 H 0.121 0.879 12 C -0.136 4.136 13 C -0.107 4.107 14 H 0.108 0.892 15 C 0.072 3.928 16 O -0.312 6.312 17 C 0.129 3.871 18 C -0.211 4.211 19 C -0.081 4.081 20 C -0.159 4.159 21 C -0.080 4.080 22 C -0.153 4.153 23 C -0.145 4.145 24 C -0.206 4.206 25 S 0.196 5.804 26 H 0.381 0.619 27 H 0.124 0.876 28 H -0.232 1.232 29 H -0.236 1.236 30 H 0.157 0.843 31 H 0.399 0.601 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 4.865 -5.204 7.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.139 4.139 3 Si 0.553 3.447 4 C -0.360 4.360 5 C -0.082 4.082 6 C -0.174 4.174 7 C 0.365 3.635 8 O -0.407 6.407 9 N -0.367 5.367 10 C 0.020 3.980 11 H 0.139 0.861 12 C -0.174 4.174 13 C -0.126 4.126 14 H 0.126 0.874 15 C -0.003 4.003 16 O -0.226 6.226 17 C 0.084 3.916 18 C -0.230 4.230 19 C -0.099 4.099 20 C -0.178 4.178 21 C -0.098 4.098 22 C -0.172 4.172 23 C -0.184 4.184 24 C -0.345 4.345 25 S 0.463 5.537 26 H 0.229 0.771 27 H 0.141 0.859 28 H -0.155 1.155 29 H -0.160 1.160 30 H 0.174 0.826 31 H 0.234 0.766 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.700 5.898 -3.821 7.528 hybrid contribution -0.082 -1.578 -0.295 1.607 sum 2.618 4.320 -4.116 6.516 Atomic orbital electron populations 1.86547 1.16529 1.81665 1.49132 1.24454 0.85290 1.09080 0.95109 0.95115 0.82055 0.77505 0.90020 1.24809 1.08631 0.99173 1.03413 1.21056 0.98134 0.94370 0.94654 1.20266 1.04339 0.94778 0.98016 1.17654 0.78773 0.86530 0.80556 1.90829 1.40175 1.50380 1.59318 1.45804 1.53442 1.13867 1.23633 1.22541 0.99813 0.82635 0.93018 0.86130 1.23357 1.01146 0.96950 0.95942 1.22360 0.95951 0.98744 0.95552 0.87353 1.22800 0.94032 0.83829 0.99663 1.86083 1.39011 1.36515 1.60995 1.19037 0.86923 0.94255 0.91376 1.21262 1.00341 1.00528 1.00859 1.20990 0.94285 0.96741 0.97856 1.21121 1.01458 0.94579 1.00611 1.21030 0.94756 0.99351 0.94669 1.20499 0.97487 0.95734 1.03465 1.23589 0.98240 0.99575 0.96992 1.25777 1.04424 0.98999 1.05262 1.83093 1.46813 1.11267 1.12564 0.77141 0.85852 1.15477 1.16047 0.82561 0.76599 0.89240 0.89719 0.91856 0.91669 0.85612 0.85746 0.85785 0.85232 0.85147 0.90240 0.89553 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.01 12.85 -35.23 -0.45 -0.46 16 2 C -0.03 0.02 2.95 36.01 0.11 0.12 16 3 Si 0.65 -1.11 30.91 -169.99 -5.25 -6.37 16 4 C -0.24 0.05 5.68 -36.18 -0.21 -0.15 16 5 C -0.05 -0.08 9.91 -39.02 -0.39 -0.47 16 6 C -0.16 -0.15 5.98 -104.63 -0.63 -0.78 16 7 C 0.58 1.46 7.79 -12.63 -0.10 1.36 16 8 O -0.53 -3.51 16.40 5.24 0.09 -3.43 16 9 N -0.72 0.58 5.33 -54.06 -0.29 0.29 16 10 C 0.12 -0.10 4.24 -67.02 -0.28 -0.38 16 11 H 0.12 0.12 7.47 -51.93 -0.39 -0.27 16 12 C -0.14 0.41 7.40 -25.92 -0.19 0.22 16 13 C -0.11 0.18 4.00 -89.81 -0.36 -0.18 16 14 H 0.11 -0.13 8.14 -51.93 -0.42 -0.55 16 15 C 0.07 -0.08 4.57 37.16 0.17 0.09 16 16 O -0.31 -0.64 10.14 -19.42 -0.20 -0.84 16 17 C 0.13 0.29 6.69 -39.21 -0.26 0.03 16 18 C -0.21 -0.22 9.04 -39.43 -0.36 -0.58 16 19 C -0.08 -0.05 10.04 -39.60 -0.40 -0.45 16 20 C -0.16 -0.11 10.04 -39.56 -0.40 -0.51 16 21 C -0.08 -0.07 10.04 -39.61 -0.40 -0.47 16 22 C -0.15 -0.30 9.99 -39.43 -0.39 -0.69 16 23 C -0.15 0.12 7.45 -25.83 -0.19 -0.08 16 24 C -0.21 0.37 10.38 29.93 0.31 0.68 16 25 S 0.20 -0.40 20.18 -107.50 -2.17 -2.57 16 26 H 0.38 -1.49 8.70 45.56 0.40 -1.09 16 27 H 0.12 -0.04 7.96 -51.93 -0.41 -0.45 16 28 H -0.23 -0.27 7.11 56.52 0.40 0.14 16 29 H -0.24 -0.03 7.11 56.52 0.40 0.37 16 30 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 31 H 0.40 -1.48 7.22 -40.82 -0.29 -1.77 16 32 H 0.09 -0.40 8.08 -51.93 -0.42 -0.82 16 33 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 34 H 0.06 -0.12 7.41 -51.93 -0.38 -0.51 16 35 H 0.07 -0.12 7.65 -51.93 -0.40 -0.52 16 36 H 0.13 -0.12 6.30 -52.49 -0.33 -0.45 16 37 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 38 H 0.12 -0.13 8.06 -52.49 -0.42 -0.56 16 39 H 0.13 -0.15 8.06 -52.48 -0.42 -0.57 16 40 H 0.13 0.13 8.06 -52.49 -0.42 -0.29 16 41 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 42 H 0.09 -0.10 7.92 -51.93 -0.41 -0.51 16 43 H 0.17 -0.82 7.01 -52.49 -0.37 -1.19 16 LS Contribution 376.62 15.07 5.68 5.68 Total: 0.00 -8.48 376.62 -12.15 -20.64 By element: Atomic # 1 Polarization: -5.12 SS G_CDS: -5.59 Total: -10.71 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.96 Total: -2.23 kcal Atomic # 7 Polarization: 0.58 SS G_CDS: -0.29 Total: 0.29 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.56 Total: -4.73 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.25 Total: -6.37 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -2.17 Total: -2.57 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -8.48 -12.15 -20.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_6894386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.803 kcal (2) G-P(sol) polarization free energy of solvation -8.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds