Wall clock time and date at job start Tue Mar 9 2021 13:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37937 * 120.07357 * 2 1 4 4 C 1.38386 * 120.14494 * 179.69965 * 3 2 1 5 5 C 1.50703 * 119.85275 * 180.27285 * 4 3 2 6 6 C 1.38334 * 120.29013 * 0.25623 * 4 3 2 7 7 C 1.50704 * 119.92745 * 180.02562 * 6 4 3 8 8 O 1.42902 * 109.47113 * 74.99386 * 7 6 4 9 9 Si 1.86293 * 109.47484 * 194.99712 * 7 6 4 10 10 C 1.37980 * 120.15039 * 0.02562 * 6 4 3 11 11 C 1.39557 * 119.84524 * 0.02562 * 10 6 4 12 12 C 1.47857 * 120.13898 * 179.97438 * 11 10 6 13 13 O 1.21551 * 119.99979 * 186.16030 * 12 11 10 14 14 N 1.34771 * 119.99707 * 6.16275 * 12 11 10 15 15 C 1.46509 * 119.99630 * 179.97438 * 14 12 11 16 16 H 1.08999 * 112.84767 * 336.19450 * 15 14 12 17 17 C 1.53779 * 113.61369 * 107.50157 * 15 14 12 18 18 C 1.53775 * 87.07909 * 139.97958 * 17 15 14 19 19 H 1.09001 * 113.61632 * 89.11917 * 18 17 15 20 20 C 1.52999 * 113.61638 * 220.01698 * 18 17 15 21 21 O 1.42897 * 109.47636 * 272.50037 * 20 18 17 22 22 C 1.35894 * 117.00474 * 179.97438 * 21 20 18 23 23 C 1.38733 * 120.05558 * 359.73180 * 22 21 20 24 24 C 1.38152 * 119.94522 * 179.74550 * 23 22 21 25 25 C 1.38263 * 120.05270 * 0.50050 * 24 23 22 26 26 C 1.38264 * 120.11257 * 359.77137 * 25 24 23 27 27 C 1.38140 * 120.05932 * 359.97438 * 26 25 24 28 28 C 1.53781 * 87.08652 * 334.56894 * 18 17 15 29 29 H 1.09002 * 109.47365 * 96.79473 * 1 2 3 30 30 H 1.08995 * 109.47485 * 216.79978 * 1 2 3 31 31 H 1.09003 * 109.47607 * 336.80009 * 1 2 3 32 32 H 1.08003 * 119.92603 * 359.97123 * 3 2 1 33 33 H 1.08997 * 109.46665 * 90.00075 * 5 4 3 34 34 H 1.09003 * 109.46819 * 209.99914 * 5 4 3 35 35 H 1.09003 * 109.46883 * 330.00267 * 5 4 3 36 36 H 1.08998 * 109.46845 * 314.99951 * 7 6 4 37 37 H 0.96703 * 114.00328 * 180.02562 * 8 7 6 38 38 H 1.48500 * 110.00269 * 178.68302 * 9 7 6 39 39 H 1.48508 * 109.99847 * 300.00057 * 9 7 6 40 40 H 1.07997 * 120.07816 * 180.02562 * 10 6 4 41 41 H 0.96993 * 120.00831 * 0.02562 * 14 12 11 42 42 H 1.08996 * 113.61825 * 254.53166 * 17 15 14 43 43 H 1.09004 * 113.60917 * 25.43497 * 17 15 14 44 44 H 1.09001 * 109.47217 * 32.50405 * 20 18 17 45 45 H 1.09007 * 109.47327 * 152.49771 * 20 18 17 46 46 H 1.08001 * 120.02722 * 359.97438 * 23 22 21 47 47 H 1.08001 * 119.97107 * 180.22972 * 24 23 22 48 48 H 1.08001 * 119.94725 * 179.74577 * 25 24 23 49 49 H 1.08009 * 119.97389 * 179.97438 * 26 25 24 50 50 H 1.08000 * 120.03464 * 179.97438 * 27 26 25 51 51 H 1.08997 * 113.61410 * 270.88383 * 28 18 17 52 52 H 1.08995 * 113.61308 * 139.97952 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1937 0.0000 4 6 3.5820 1.1954 0.0063 5 6 4.3305 2.5034 0.0125 6 6 4.2812 0.0018 0.0072 7 6 5.7882 0.0132 0.0147 8 8 6.2555 0.3630 1.3191 9 14 6.4244 -1.6776 -0.4402 10 6 3.6020 -1.1993 0.0014 11 6 2.2065 -1.2080 -0.0060 12 6 1.4721 -2.4912 -0.0129 13 8 0.2625 -2.4986 -0.1322 14 7 2.1440 -3.6527 0.1133 15 6 1.4162 -4.9243 0.1071 16 1 0.3737 -4.8167 0.4067 17 6 1.6074 -5.7371 -1.1842 18 6 1.6793 -6.9881 -0.2928 19 1 0.7083 -7.4458 -0.1036 20 6 2.7373 -7.9991 -0.7394 21 8 2.1700 -8.8875 -1.7042 22 6 2.9832 -9.8532 -2.2070 23 6 4.3019 -9.9404 -1.7847 24 6 5.1251 -10.9263 -2.2934 25 6 4.6388 -11.8192 -3.2304 26 6 3.3266 -11.7309 -3.6570 27 6 2.4979 -10.7502 -3.1475 28 6 2.1531 -6.0593 0.8376 29 1 -0.3634 -0.1216 -1.0204 30 1 -0.3634 -0.8228 0.6155 31 1 -0.3634 0.9446 0.4048 32 1 1.6581 2.1290 -0.0005 33 1 4.5063 2.8165 1.0416 34 1 5.2857 2.3777 -0.4973 35 1 3.7408 3.2619 -0.5024 36 1 6.1495 0.7441 -0.7087 37 1 7.2189 0.3903 1.3976 38 1 7.9091 -1.6713 -0.4674 39 1 5.9386 -2.6833 0.5386 40 1 4.1491 -2.1304 0.0026 41 1 3.1092 -3.6469 0.2090 42 1 0.7397 -5.7200 -1.8435 43 1 2.5399 -5.5175 -1.7043 44 1 3.5804 -7.4702 -1.1840 45 1 3.0808 -8.5705 0.1230 46 1 4.6834 -9.2404 -1.0561 47 1 6.1507 -10.9968 -1.9622 48 1 5.2851 -12.5867 -3.6300 49 1 2.9492 -12.4294 -4.3894 50 1 1.4731 -10.6813 -3.4814 51 1 3.2346 -5.9278 0.8702 52 1 1.7257 -6.3023 1.8104 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_9599494.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:42 Heat of formation + Delta-G solvation = -20.254127 kcal Electronic energy + Delta-G solvation = -32261.548798 eV Core-core repulsion = 27965.816091 eV Total energy + Delta-G solvation = -4295.732707 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.81709 -41.17950 -40.43026 -39.36272 -38.11079 -37.68356 -35.12122 -34.47756 -33.20241 -32.00291 -31.05020 -29.64403 -29.01652 -28.32170 -26.75434 -25.60208 -24.57283 -23.69041 -23.40943 -22.83047 -21.81292 -21.29958 -20.41465 -19.18658 -18.61010 -18.55194 -17.83059 -17.18657 -16.92535 -16.85270 -16.58402 -16.35653 -16.19156 -16.11495 -15.83735 -15.37809 -15.23156 -14.83956 -14.74092 -14.61652 -14.37072 -14.27142 -14.12580 -13.95839 -13.87978 -13.49860 -13.47011 -13.26224 -13.12889 -12.98268 -12.88151 -12.74802 -12.61572 -12.54529 -12.33071 -12.04420 -11.89607 -11.84250 -11.82430 -11.64765 -11.28513 -10.74657 -10.43327 -10.17004 -9.96393 -9.89830 -9.61343 -9.17372 -4.95111 -0.25643 0.15969 0.38153 0.48475 1.25807 1.55362 1.70132 1.89048 1.99463 2.25427 2.60944 2.83957 3.31593 3.37883 3.49048 3.57295 3.63360 3.74641 3.75666 3.77434 3.84385 3.90082 3.96787 4.11280 4.15518 4.23546 4.27336 4.29496 4.36545 4.44390 4.49600 4.51523 4.54682 4.58568 4.66333 4.68141 4.70950 4.73596 4.76762 4.79331 4.81627 4.90151 4.96526 5.01897 5.05979 5.07653 5.12345 5.19205 5.28368 5.34618 5.47494 5.48149 5.49660 5.53634 5.60647 5.80625 5.85766 6.41256 6.46629 6.60325 7.10998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.027 4.027 3 C -0.136 4.136 4 C -0.033 4.033 5 C -0.118 4.118 6 C -0.099 4.099 7 C -0.082 4.082 8 O -0.552 6.552 9 Si 0.744 3.256 10 C -0.073 4.073 11 C -0.161 4.161 12 C 0.558 3.442 13 O -0.561 6.561 14 N -0.708 5.708 15 C 0.118 3.882 16 H 0.102 0.898 17 C -0.143 4.143 18 C -0.102 4.102 19 H 0.100 0.900 20 C 0.068 3.932 21 O -0.330 6.330 22 C 0.112 3.888 23 C -0.218 4.218 24 C -0.088 4.088 25 C -0.169 4.169 26 C -0.087 4.087 27 C -0.174 4.174 28 C -0.123 4.123 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.395 0.605 38 H -0.283 1.283 39 H -0.278 1.278 40 H 0.142 0.858 41 H 0.409 0.591 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.143 0.857 47 H 0.144 0.856 48 H 0.141 0.859 49 H 0.146 0.854 50 H 0.130 0.870 51 H 0.108 0.892 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.667 0.702 -1.234 6.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.028 4.028 3 C -0.154 4.154 4 C -0.033 4.033 5 C -0.174 4.174 6 C -0.099 4.099 7 C -0.191 4.191 8 O -0.362 6.362 9 Si 0.648 3.352 10 C -0.092 4.092 11 C -0.164 4.164 12 C 0.347 3.653 13 O -0.442 6.442 14 N -0.359 5.359 15 C 0.013 3.987 16 H 0.120 0.880 17 C -0.181 4.181 18 C -0.121 4.121 19 H 0.119 0.881 20 C -0.006 4.006 21 O -0.245 6.245 22 C 0.067 3.933 23 C -0.236 4.236 24 C -0.106 4.106 25 C -0.187 4.187 26 C -0.105 4.105 27 C -0.193 4.193 28 C -0.161 4.161 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.166 0.834 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.245 0.755 38 H -0.209 1.209 39 H -0.205 1.205 40 H 0.160 0.840 41 H 0.247 0.753 42 H 0.082 0.918 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.160 0.840 47 H 0.162 0.838 48 H 0.159 0.841 49 H 0.164 0.836 50 H 0.148 0.852 51 H 0.126 0.874 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.453 0.081 -0.985 5.542 hybrid contribution 1.016 0.578 0.962 1.514 sum 6.469 0.659 -0.022 6.502 Atomic orbital electron populations 1.21001 0.90010 1.03105 1.03161 1.20237 0.97050 0.91969 0.93520 1.21203 0.93649 0.98031 1.02511 1.20277 0.93582 0.96051 0.93439 1.20939 1.00544 0.92755 1.03179 1.19206 0.94429 0.92668 1.03620 1.24912 0.93284 1.12629 0.88231 1.86573 1.28383 1.91381 1.29887 0.94342 0.78375 0.74496 0.88013 1.21265 0.92683 0.98370 0.96838 1.19676 0.93631 0.93005 1.10085 1.18465 0.86804 0.84433 0.75585 1.90732 1.15041 1.87584 1.50808 1.45865 1.11191 1.05141 1.73699 1.22514 0.97576 0.80966 0.97632 0.88010 1.23559 1.03268 0.94512 0.96807 1.22283 0.99737 0.92940 0.97139 0.88142 1.22967 0.96535 0.90381 0.90752 1.86054 1.39705 1.41609 1.57109 1.19257 0.90082 0.89587 0.94395 1.21506 0.93305 1.03339 1.05485 1.21316 1.00357 0.93501 0.95433 1.21423 0.96349 1.01239 0.99691 1.21291 0.93695 0.96856 0.98670 1.20705 1.01686 0.97123 0.99752 1.23330 1.02129 0.92510 0.98112 0.90961 0.90649 0.90747 0.83426 0.90593 0.90034 0.90077 0.88474 0.75501 1.20924 1.20470 0.84047 0.75319 0.91831 0.88439 0.90550 0.90739 0.83950 0.83813 0.84132 0.83645 0.85198 0.87382 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 8.70 71.23 0.62 -0.06 16 2 C -0.03 -0.15 5.91 -19.61 -0.12 -0.27 16 3 C -0.14 -0.32 9.31 22.23 0.21 -0.11 16 4 C -0.03 -0.04 5.89 -19.81 -0.12 -0.16 16 5 C -0.12 0.34 9.53 71.24 0.68 1.01 16 6 C -0.10 -0.09 5.29 -19.90 -0.11 -0.20 16 7 C -0.08 0.26 2.03 71.24 0.14 0.41 16 8 O -0.55 0.55 12.78 -148.98 -1.90 -1.35 16 9 Si 0.74 -3.78 30.19 68.60 2.07 -1.71 16 10 C -0.07 -0.09 8.13 22.53 0.18 0.09 16 11 C -0.16 -0.84 5.87 -20.09 -0.12 -0.96 16 12 C 0.56 3.86 7.70 86.79 0.67 4.53 16 13 O -0.56 -7.45 12.96 -3.87 -0.05 -7.50 16 14 N -0.71 -0.44 5.30 -442.89 -2.35 -2.79 16 15 C 0.12 -0.02 4.24 45.52 0.19 0.17 16 16 H 0.10 0.41 7.46 -2.39 -0.02 0.39 16 17 C -0.14 0.13 7.43 31.12 0.23 0.36 16 18 C -0.10 0.27 4.01 -10.27 -0.04 0.23 16 19 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 20 C 0.07 -0.14 4.58 71.98 0.33 0.19 16 21 O -0.33 -1.58 10.14 -92.36 -0.94 -2.52 16 22 C 0.11 0.57 6.69 22.51 0.15 0.72 16 23 C -0.22 -0.39 9.04 22.37 0.20 -0.19 16 24 C -0.09 -0.06 10.04 22.26 0.22 0.17 16 25 C -0.17 -0.15 10.04 22.28 0.22 0.07 16 26 C -0.09 -0.17 10.04 22.25 0.22 0.05 16 27 C -0.17 -0.83 9.99 22.37 0.22 -0.61 16 28 C -0.12 0.65 7.39 31.12 0.23 0.88 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.76 5.90 -2.39 -0.01 0.74 16 31 H 0.07 0.15 8.04 -2.39 -0.02 0.13 16 32 H 0.15 -0.23 8.06 -2.91 -0.02 -0.25 16 33 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.08 -0.40 6.22 -2.39 -0.01 -0.42 16 35 H 0.08 -0.41 8.08 -2.39 -0.02 -0.43 16 36 H 0.10 -0.69 6.48 -2.39 -0.02 -0.71 16 37 H 0.39 -3.46 8.74 -74.06 -0.65 -4.11 16 38 H -0.28 0.22 7.11 99.48 0.71 0.93 16 39 H -0.28 0.30 6.75 99.48 0.67 0.97 16 40 H 0.14 -0.45 3.29 -2.91 -0.01 -0.46 16 41 H 0.41 -1.74 6.80 -92.71 -0.63 -2.37 16 42 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.10 -0.28 7.90 -2.38 -0.02 -0.30 16 44 H 0.08 -0.35 7.35 -2.39 -0.02 -0.37 16 45 H 0.07 -0.30 7.68 -2.38 -0.02 -0.32 16 46 H 0.14 -0.37 6.30 -2.91 -0.02 -0.39 16 47 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 48 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 49 H 0.15 -0.35 8.06 -2.91 -0.02 -0.37 16 50 H 0.13 0.46 8.06 -2.91 -0.02 0.44 16 51 H 0.11 -0.95 8.08 -2.39 -0.02 -0.97 16 52 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 Total: 0.00 -19.42 416.39 0.75 -18.67 By element: Atomic # 1 Polarization: -8.81 SS G_CDS: -0.32 Total: -9.13 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 4.24 Total: 6.32 kcal Atomic # 7 Polarization: -0.44 SS G_CDS: -2.35 Total: -2.79 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -2.89 Total: -11.37 kcal Atomic # 14 Polarization: -3.78 SS G_CDS: 2.07 Total: -1.71 kcal Total: -19.42 0.75 -18.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_9599494.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.581 kcal (2) G-P(sol) polarization free energy of solvation -19.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds