Wall clock time and date at job start Tue Mar 9 2021 13:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86293 * 109.47322 * 2 1 4 4 C 1.50699 * 109.46974 * 120.00145 * 2 1 3 5 5 C 1.34231 * 126.50113 * 254.97406 * 4 2 1 6 6 N 1.36833 * 109.94275 * 180.02562 * 5 4 2 7 7 C 1.46504 * 125.06599 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.46857 * 265.02140 * 7 6 5 9 9 O 1.21281 * 120.00171 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00292 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00453 * 179.97438 * 10 8 7 12 12 H 1.09005 * 112.84880 * 23.80373 * 11 10 8 13 13 C 1.53779 * 113.61516 * 154.99902 * 11 10 8 14 14 C 1.53781 * 87.08284 * 139.98060 * 13 11 10 15 15 H 1.09001 * 113.61701 * 89.19771 * 14 13 11 16 16 C 1.52991 * 113.61806 * 220.02047 * 14 13 11 17 17 O 1.42903 * 109.47438 * 185.00087 * 16 14 13 18 18 C 1.35897 * 117.00233 * 180.02562 * 17 16 14 19 19 C 1.38731 * 120.05660 * 359.95111 * 18 17 16 20 20 C 1.38150 * 119.94616 * 180.02562 * 19 18 17 21 21 C 1.38265 * 120.05296 * 0.02562 * 20 19 18 22 22 C 1.38264 * 120.11373 * 0.02562 * 21 20 19 23 23 C 1.38147 * 120.05455 * 359.97438 * 22 21 20 24 24 C 1.53777 * 113.61538 * 252.49908 * 11 10 8 25 25 C 1.37698 * 109.87176 * 0.22486 * 6 5 4 26 26 C 1.39085 * 133.50784 * 180.40098 * 25 6 5 27 27 C 1.37785 * 119.77500 * 179.65339 * 26 25 6 28 28 C 1.38791 * 120.66669 * 359.74780 * 27 26 25 29 29 C 1.36657 * 120.53080 * 0.02562 * 28 27 26 30 30 C 1.39597 * 119.76306 * 0.02562 * 29 28 27 31 31 H 0.96701 * 114.00061 * 300.00215 * 1 2 3 32 32 H 1.09005 * 109.46822 * 239.99787 * 2 1 3 33 33 H 1.48506 * 110.00085 * 178.68097 * 3 2 1 34 34 H 1.48502 * 109.99917 * 299.99641 * 3 2 1 35 35 H 1.08001 * 125.03172 * 0.02562 * 5 4 2 36 36 H 1.09004 * 109.47002 * 145.02201 * 7 6 5 37 37 H 1.08999 * 109.46801 * 25.01692 * 7 6 5 38 38 H 0.97003 * 119.99199 * 359.97438 * 10 8 7 39 39 H 1.09000 * 113.61338 * 25.43543 * 13 11 10 40 40 H 1.08996 * 113.69360 * 254.54012 * 13 11 10 41 41 H 1.08998 * 109.47746 * 64.99956 * 16 14 13 42 42 H 1.08998 * 109.47044 * 305.00040 * 16 14 13 43 43 H 1.08002 * 120.02802 * 0.04677 * 19 18 17 44 44 H 1.08002 * 119.97142 * 180.27626 * 20 19 18 45 45 H 1.07997 * 119.93870 * 179.97438 * 21 20 19 46 46 H 1.07998 * 119.97128 * 179.97438 * 22 21 20 47 47 H 1.07998 * 120.02647 * 179.97438 * 23 22 21 48 48 H 1.08997 * 113.62080 * 105.47183 * 24 11 10 49 49 H 1.09008 * 113.61297 * 334.56466 * 24 11 10 50 50 H 1.07999 * 120.10925 * 359.39731 * 26 25 6 51 51 H 1.08004 * 119.66658 * 179.77663 * 27 26 25 52 52 H 1.08000 * 119.73504 * 180.02562 * 28 27 26 53 53 H 1.07995 * 120.12164 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.4611 -0.1377 2.3227 6 7 2.8035 -1.0991 3.2342 7 6 3.4093 -0.8406 4.5429 8 6 4.9074 -0.9629 4.4358 9 8 5.4188 -1.2393 3.3714 10 7 5.6792 -0.7652 5.5229 11 6 7.1355 -0.8846 5.4190 12 1 7.5021 -0.7237 4.4052 13 6 7.8973 -0.0790 6.4846 14 6 8.8591 -1.2745 6.5879 15 1 9.6986 -1.2206 5.8948 16 6 9.2911 -1.5916 8.0209 17 8 10.2677 -2.6348 8.0043 18 6 10.7590 -3.0392 9.2050 19 6 10.3113 -2.4435 10.3752 20 6 10.8127 -2.8560 11.5946 21 6 11.7604 -3.8613 11.6493 22 6 12.2091 -4.4558 10.4844 23 6 11.7107 -4.0469 9.2626 24 6 7.6989 -2.1504 6.0861 25 6 2.4990 -2.3462 2.7360 26 6 2.6298 -3.6363 3.2388 27 6 2.2162 -4.7108 2.4820 28 6 1.6644 -4.5194 1.2230 29 6 1.5223 -3.2602 0.7114 30 6 1.9357 -2.1572 1.4606 31 1 -0.3933 0.4417 0.7650 32 1 1.7923 -0.5139 -0.8900 33 1 3.5347 1.7702 0.0321 34 1 1.5616 2.4678 -1.2086 35 1 2.5971 0.9246 2.4616 36 1 3.0362 -1.5662 5.2657 37 1 3.1495 0.1658 4.8710 38 1 5.2701 -0.5437 6.3742 39 1 7.3212 0.0976 7.3930 40 1 8.3656 0.8260 6.0978 41 1 8.4250 -1.9139 8.5987 42 1 9.7204 -0.6994 8.4768 43 1 9.5711 -1.6582 10.3330 44 1 10.4612 -2.3957 12.5062 45 1 12.1514 -4.1821 12.6036 46 1 12.9497 -5.2406 10.5298 47 1 12.0618 -4.5113 8.3530 48 1 8.0068 -2.9181 5.3762 49 1 7.0686 -2.5401 6.8856 50 1 3.0580 -3.7955 4.2174 51 1 2.3219 -5.7122 2.8727 52 1 1.3448 -5.3725 0.6428 53 1 1.0925 -3.1189 -0.2692 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16536076_9818708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:47 Heat of formation + Delta-G solvation = 22.010783 kcal Electronic energy + Delta-G solvation = -34837.535350 eV Core-core repulsion = 30221.757194 eV Total energy + Delta-G solvation = -4615.778155 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.177 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.54156 -41.41773 -40.83703 -39.53418 -38.16191 -38.06061 -37.57524 -34.82607 -33.98790 -32.03647 -31.53022 -31.02488 -30.24556 -29.49343 -28.52524 -26.76694 -25.90999 -24.43998 -23.74303 -23.38716 -22.85715 -22.33362 -21.68781 -20.81011 -20.56026 -19.21356 -18.58108 -18.40273 -17.84993 -17.53938 -17.19252 -16.93592 -16.86787 -16.45434 -16.45013 -16.33058 -16.11286 -15.87501 -15.47824 -15.37115 -15.26666 -14.87505 -14.72169 -14.52294 -14.36867 -14.26776 -14.13381 -14.06233 -13.67055 -13.49818 -13.37614 -13.13158 -12.98559 -12.72968 -12.60149 -12.57894 -12.40691 -12.26992 -12.13071 -12.05872 -11.85528 -11.83157 -11.66958 -11.32961 -11.10838 -10.56020 -10.31620 -10.13070 -9.97950 -9.19207 -9.17008 -8.63602 -5.06286 0.12794 0.36576 0.46805 0.61687 1.33602 1.42250 1.44431 1.64014 1.75319 1.99542 2.10294 2.30601 2.82357 2.93110 3.37496 3.47689 3.58171 3.65448 3.67713 3.72688 3.73375 3.79265 3.87488 3.88585 3.95450 4.04270 4.16791 4.20009 4.21692 4.25103 4.28214 4.28766 4.35866 4.47261 4.48278 4.52968 4.54777 4.66217 4.68567 4.70300 4.72539 4.77337 4.78402 4.86983 4.95062 5.00683 5.05955 5.11660 5.18520 5.32801 5.46083 5.48665 5.50597 5.59231 5.64134 5.71644 5.74019 5.84304 6.19256 6.22891 6.45278 6.49135 6.88665 7.15173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.042 4.042 3 Si 0.803 3.197 4 C -0.227 4.227 5 C 0.081 3.919 6 N -0.466 5.466 7 C 0.088 3.912 8 C 0.490 3.510 9 O -0.577 6.577 10 N -0.699 5.699 11 C 0.120 3.880 12 H 0.088 0.912 13 C -0.113 4.113 14 C -0.108 4.108 15 H 0.092 0.908 16 C 0.069 3.931 17 O -0.334 6.334 18 C 0.112 3.888 19 C -0.216 4.216 20 C -0.087 4.087 21 C -0.169 4.169 22 C -0.088 4.088 23 C -0.176 4.176 24 C -0.145 4.145 25 C 0.091 3.909 26 C -0.133 4.133 27 C -0.109 4.109 28 C -0.154 4.154 29 C -0.091 4.091 30 C -0.118 4.118 31 H 0.393 0.607 32 H 0.087 0.913 33 H -0.295 1.295 34 H -0.298 1.298 35 H 0.210 0.790 36 H 0.144 0.856 37 H 0.171 0.829 38 H 0.423 0.577 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.128 0.872 48 H 0.050 0.950 49 H 0.099 0.901 50 H 0.133 0.867 51 H 0.145 0.855 52 H 0.135 0.865 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 5.494 11.848 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.151 4.151 3 Si 0.709 3.291 4 C -0.234 4.234 5 C -0.044 4.044 6 N -0.149 5.149 7 C -0.036 4.036 8 C 0.275 3.725 9 O -0.456 6.456 10 N -0.352 5.352 11 C 0.015 3.985 12 H 0.107 0.893 13 C -0.151 4.151 14 C -0.127 4.127 15 H 0.111 0.889 16 C -0.006 4.006 17 O -0.249 6.249 18 C 0.067 3.933 19 C -0.234 4.234 20 C -0.105 4.105 21 C -0.187 4.187 22 C -0.106 4.106 23 C -0.195 4.195 24 C -0.184 4.184 25 C -0.015 4.015 26 C -0.154 4.154 27 C -0.128 4.128 28 C -0.173 4.173 29 C -0.110 4.110 30 C -0.122 4.122 31 H 0.243 0.757 32 H 0.104 0.896 33 H -0.223 1.223 34 H -0.225 1.225 35 H 0.226 0.774 36 H 0.162 0.838 37 H 0.189 0.811 38 H 0.262 0.738 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.159 0.841 46 H 0.162 0.838 47 H 0.146 0.854 48 H 0.069 0.931 49 H 0.118 0.882 50 H 0.151 0.849 51 H 0.162 0.838 52 H 0.153 0.847 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.498 5.604 10.240 11.684 hybrid contribution 0.270 -1.005 -0.411 1.119 sum -0.228 4.599 9.829 10.854 Atomic orbital electron populations 1.86451 1.17748 1.82395 1.50212 1.24589 0.84718 1.10461 0.95338 0.94140 0.76584 0.73440 0.84949 1.20794 1.12046 0.91863 0.98700 1.22078 0.98649 0.95381 0.88337 1.43469 1.51935 1.03723 1.15748 1.22040 0.88262 1.09440 0.83900 1.21594 0.90845 0.76066 0.83955 1.90811 1.75916 1.48570 1.30289 1.45772 1.06302 1.70763 1.12360 1.22349 0.79516 0.96966 0.99711 0.89347 1.23284 0.95907 0.96587 0.99361 1.22315 0.97156 0.97870 0.95313 0.88933 1.22984 0.90622 0.89184 0.97787 1.86060 1.56758 1.54251 1.27816 1.19245 0.94416 0.94816 0.84857 1.21515 1.05311 1.04450 0.92163 1.21336 0.95399 0.95909 0.97889 1.21431 0.99599 0.98477 0.99205 1.21283 0.98750 0.99130 0.91418 1.20701 0.99831 0.99406 0.99571 1.23557 0.97196 0.97010 1.00587 1.18385 1.01567 0.87122 0.94386 1.20245 1.04554 0.89171 1.01397 1.21122 0.98318 0.99037 0.94361 1.20904 1.02400 0.96988 0.97005 1.20442 0.99308 0.91839 0.99373 1.19379 1.03921 0.93957 0.94950 0.75679 0.89552 1.22270 1.22546 0.77407 0.83841 0.81149 0.73831 0.86275 0.89353 0.90363 0.90529 0.83634 0.83631 0.84123 0.83775 0.85446 0.93070 0.88214 0.84933 0.83773 0.84694 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.47 12.88 -148.98 -1.92 -4.39 16 2 C -0.04 -0.19 3.06 71.24 0.22 0.03 16 3 Si 0.80 -0.29 30.75 68.60 2.11 1.82 16 4 C -0.23 -1.35 5.58 -18.63 -0.10 -1.46 16 5 C 0.08 0.03 9.89 83.00 0.82 0.85 16 6 N -0.47 -0.55 2.27 -519.99 -1.18 -1.73 16 7 C 0.09 -0.73 6.48 85.63 0.56 -0.18 16 8 C 0.49 -0.71 7.90 87.66 0.69 -0.02 16 9 O -0.58 -6.68 16.02 -3.03 -0.05 -6.73 16 10 N -0.70 5.62 5.35 -440.06 -2.36 3.27 16 11 C 0.12 -0.50 4.24 45.52 0.19 -0.31 16 12 H 0.09 0.22 7.46 -2.38 -0.02 0.21 16 13 C -0.11 1.09 7.39 31.12 0.23 1.32 16 14 C -0.11 0.49 4.01 -10.27 -0.04 0.45 16 15 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 16 C 0.07 -0.27 4.58 71.98 0.33 0.06 16 17 O -0.33 -1.34 10.14 -92.39 -0.94 -2.28 16 18 C 0.11 0.48 6.69 22.51 0.15 0.63 16 19 C -0.22 -0.11 9.04 22.37 0.20 0.10 16 20 C -0.09 0.04 10.04 22.26 0.22 0.26 16 21 C -0.17 -0.04 10.04 22.28 0.22 0.18 16 22 C -0.09 -0.15 10.04 22.25 0.22 0.08 16 23 C -0.18 -0.79 9.99 22.37 0.22 -0.57 16 24 C -0.14 0.43 7.43 31.12 0.23 0.66 16 25 C 0.09 0.70 6.80 39.03 0.27 0.96 16 26 C -0.13 -0.79 10.00 22.37 0.22 -0.57 16 27 C -0.11 -0.65 10.01 22.29 0.22 -0.43 16 28 C -0.15 -1.21 9.97 22.03 0.22 -0.99 16 29 C -0.09 -0.99 10.05 22.23 0.22 -0.76 16 30 C -0.12 -1.27 6.35 -20.20 -0.13 -1.39 16 31 H 0.39 -1.93 8.70 -74.06 -0.64 -2.58 16 32 H 0.09 0.72 7.96 -2.38 -0.02 0.70 16 33 H -0.30 -1.82 7.11 99.48 0.71 -1.11 16 34 H -0.30 -1.99 7.11 99.48 0.71 -1.29 16 35 H 0.21 -1.84 6.35 -2.91 -0.02 -1.86 16 36 H 0.14 -1.90 8.14 -2.38 -0.02 -1.92 16 37 H 0.17 -3.02 8.12 -2.39 -0.02 -3.04 16 38 H 0.42 -6.93 8.73 -92.71 -0.81 -7.74 16 39 H 0.12 -1.77 8.08 -2.39 -0.02 -1.79 16 40 H 0.09 -0.85 8.14 -2.39 -0.02 -0.86 16 41 H 0.08 -0.55 7.36 -2.39 -0.02 -0.56 16 42 H 0.08 -0.48 7.66 -2.39 -0.02 -0.50 16 43 H 0.15 -0.67 6.30 -2.91 -0.02 -0.69 16 44 H 0.15 -0.78 8.06 -2.91 -0.02 -0.80 16 45 H 0.14 -0.53 8.06 -2.91 -0.02 -0.56 16 46 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 47 H 0.13 0.46 8.06 -2.91 -0.02 0.44 16 48 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.10 -0.56 7.90 -2.38 -0.02 -0.58 16 50 H 0.13 0.14 8.06 -2.91 -0.02 0.11 16 51 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 52 H 0.14 0.52 8.06 -2.91 -0.02 0.49 16 53 H 0.12 1.18 8.06 -2.91 -0.02 1.15 16 Total: 0.00 -34.82 442.84 0.60 -34.23 By element: Atomic # 1 Polarization: -22.62 SS G_CDS: -0.47 Total: -23.09 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 5.40 Total: -1.10 kcal Atomic # 7 Polarization: 5.07 SS G_CDS: -3.54 Total: 1.54 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -2.90 Total: -13.39 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: 2.11 Total: 1.82 kcal Total: -34.82 0.60 -34.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16536076_9818708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.237 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds