Wall clock time and date at job start Tue Mar 9 2021 14:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86298 * 109.47036 * 2 1 4 4 C 1.86298 * 109.47029 * 240.00267 * 2 1 3 5 5 C 1.86295 * 109.47329 * 120.00047 * 2 1 3 6 6 N 1.46501 * 109.46907 * 60.00268 * 5 2 1 7 7 C 1.35818 * 126.05589 * 90.00185 * 6 5 2 8 8 C 1.35772 * 107.56016 * 179.97438 * 7 6 5 9 9 N 1.40722 * 126.07913 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99660 * 180.02562 * 9 8 7 11 11 O 1.21614 * 119.99976 * 0.02562 * 10 9 8 12 12 C 1.47522 * 119.99702 * 180.02562 * 10 9 8 13 13 C 1.39667 * 120.19514 * 0.02562 * 12 10 9 14 14 C 1.37825 * 119.90904 * 179.97438 * 13 12 10 15 15 C 1.38501 * 120.30104 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.80889 * 180.02562 * 15 14 13 17 17 O 1.42896 * 109.47430 * 119.99694 * 16 15 14 18 18 Si 1.86304 * 109.46995 * 0.02562 * 16 15 14 19 19 H 1.48496 * 109.47221 * 59.99843 * 18 16 15 20 20 H 1.48496 * 109.47161 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46984 * 299.99914 * 18 16 15 22 22 C 1.38107 * 120.38946 * 0.04523 * 15 14 13 23 23 C 1.38653 * 120.08443 * 359.95377 * 22 15 14 24 24 O 1.35658 * 120.15152 * 180.29908 * 23 22 15 25 25 C 1.40264 * 107.83575 * 0.24571 * 8 7 6 26 26 N 1.30828 * 108.33335 * 359.58554 * 25 8 7 27 27 H 1.09003 * 109.47128 * 299.99917 * 1 2 3 28 28 H 1.09002 * 109.47295 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47375 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47223 * 300.00221 * 3 2 1 32 32 H 1.09003 * 109.47094 * 60.00062 * 3 2 1 33 33 H 1.09002 * 109.47286 * 300.00040 * 4 2 1 34 34 H 1.09002 * 109.47156 * 59.99824 * 4 2 1 35 35 H 1.09000 * 109.47289 * 179.97438 * 4 2 1 36 36 H 1.09003 * 109.47045 * 300.00086 * 5 2 1 37 37 H 1.09000 * 109.47066 * 179.97438 * 5 2 1 38 38 H 1.07998 * 126.22014 * 359.97438 * 7 6 5 39 39 H 0.96993 * 119.99924 * 0.02562 * 9 8 7 40 40 H 1.08006 * 120.04308 * 0.02562 * 13 12 10 41 41 H 1.07999 * 119.85277 * 179.97438 * 14 13 12 42 42 H 1.09003 * 109.47571 * 240.00228 * 16 15 14 43 43 H 0.96698 * 114.00646 * 180.02562 * 17 16 15 44 44 H 1.07996 * 119.95784 * 180.02562 * 22 15 14 45 45 H 0.96706 * 113.99967 * 269.72393 * 24 23 22 46 46 H 1.07995 * 125.83145 * 179.75653 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5211 6 7 1.9957 -2.2594 1.5210 7 6 2.6258 -3.3300 0.9720 8 6 1.8453 -4.4198 1.1877 9 7 2.1290 -5.7363 0.7796 10 6 1.2628 -6.7301 1.0599 11 8 0.2359 -6.4890 1.6652 12 6 1.5604 -8.1103 0.6326 13 6 2.7388 -8.3919 -0.0623 14 6 3.0112 -9.6836 -0.4583 15 6 2.1216 -10.7052 -0.1700 16 6 2.4309 -12.1136 -0.6077 17 8 2.5006 -12.9643 0.5383 18 14 4.0654 -12.1414 -1.5012 19 1 5.1354 -11.6598 -0.5911 20 1 4.3705 -13.5294 -1.9321 21 1 3.9936 -11.2574 -2.6922 22 6 0.9525 -10.4407 0.5161 23 6 0.6624 -9.1471 0.9221 24 8 -0.4827 -8.8868 1.6014 25 6 0.7029 -3.9989 1.8843 26 7 0.7966 -2.7099 2.0876 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5739 1.7565 -0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1206 2.2703 0.8900 33 1 2.1206 -1.9058 -1.5212 34 1 2.1206 -0.3643 -2.4111 35 1 3.5739 -0.8778 -1.5214 36 1 2.1207 -0.3644 2.4111 37 1 3.5740 -0.8786 1.5208 38 1 3.5752 -3.3169 0.4573 39 1 2.9478 -5.9285 0.2965 40 1 3.4360 -7.5985 -0.2882 41 1 3.9225 -9.9002 -0.9959 42 1 1.6453 -12.4674 -1.2755 43 1 2.6973 -13.8881 0.3312 44 1 0.2640 -11.2427 0.7376 45 1 -1.2335 -8.6617 1.0350 46 1 -0.1130 -4.6313 2.2014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608520_13422076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:33:18 Heat of formation + Delta-G solvation = -32.562348 kcal Electronic energy + Delta-G solvation = -27821.212834 eV Core-core repulsion = 23836.952996 eV Total energy + Delta-G solvation = -3984.259838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 349.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.26695 -41.37070 -39.71180 -38.34639 -37.24127 -35.71334 -33.76661 -32.84073 -31.11776 -30.29687 -29.67625 -28.57611 -28.43576 -27.79004 -26.63298 -23.91182 -23.77727 -22.49435 -21.99619 -20.92330 -19.26742 -18.75856 -18.42771 -18.22180 -17.35407 -16.70335 -16.54828 -16.41499 -16.18109 -15.84352 -15.69574 -15.22243 -14.95820 -14.79455 -14.58699 -14.32998 -14.30011 -14.06787 -13.96607 -13.92681 -13.74542 -13.51653 -13.40670 -13.36956 -13.23833 -13.15776 -13.06806 -12.52861 -12.14071 -12.11078 -12.09319 -11.61898 -11.57533 -11.29231 -11.03040 -10.92261 -10.70351 -10.55132 -10.04784 -9.96544 -9.78328 -8.50493 -0.41531 0.13080 0.83405 0.99320 1.31616 1.32195 1.38201 1.49483 1.65827 1.70337 1.78399 1.87097 2.16240 2.22557 2.42713 2.66776 3.06004 3.25780 3.54635 3.62232 3.69530 3.74654 3.91352 4.03101 4.19943 4.21672 4.32388 4.50707 4.55857 4.56953 4.59273 4.62050 4.63713 4.69528 4.73620 4.78177 4.79102 4.82014 4.95923 5.14009 5.23066 5.24844 5.33449 5.40587 5.54053 5.58633 5.98679 6.08574 6.43758 6.44579 6.74493 6.87347 7.23603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.020 2.980 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.169 4.169 6 N -0.344 5.344 7 C 0.013 3.987 8 C -0.002 4.002 9 N -0.641 5.641 10 C 0.561 3.439 11 O -0.507 6.507 12 C -0.163 4.163 13 C -0.064 4.064 14 C -0.142 4.142 15 C -0.030 4.030 16 C -0.089 4.089 17 O -0.542 6.542 18 Si 0.948 3.052 19 H -0.245 1.245 20 H -0.255 1.255 21 H -0.248 1.248 22 C -0.124 4.124 23 C 0.176 3.824 24 O -0.475 6.475 25 C 0.048 3.952 26 N -0.282 5.282 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.175 0.825 39 H 0.407 0.593 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.083 0.917 43 H 0.383 0.617 44 H 0.142 0.858 45 H 0.398 0.602 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 -0.625 -6.453 7.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.214 2.786 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.334 4.334 6 N -0.127 5.127 7 C -0.136 4.136 8 C -0.107 4.107 9 N -0.287 5.287 10 C 0.349 3.651 11 O -0.382 6.382 12 C -0.166 4.166 13 C -0.083 4.083 14 C -0.160 4.160 15 C -0.031 4.031 16 C -0.199 4.199 17 O -0.348 6.348 18 Si 0.770 3.230 19 H -0.169 1.169 20 H -0.179 1.179 21 H -0.172 1.172 22 C -0.143 4.143 23 C 0.130 3.870 24 O -0.286 6.286 25 C -0.138 4.138 26 N -0.105 5.105 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.192 0.808 39 H 0.243 0.757 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.100 0.900 43 H 0.231 0.769 44 H 0.160 0.840 45 H 0.257 0.743 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.328 1.098 -5.089 6.770 hybrid contribution 0.455 -1.329 -0.948 1.695 sum 4.783 -0.232 -6.037 7.705 Atomic orbital electron populations 1.26069 1.20047 1.04923 1.04395 0.79371 0.68116 0.66342 0.64799 1.26099 1.06368 1.18269 1.05078 1.26125 1.06111 1.08299 1.15212 1.26953 1.04408 0.83281 1.18804 1.47968 1.15698 1.06338 1.42701 1.21851 1.00208 0.86548 1.04947 1.17636 0.98563 0.84590 1.09870 1.42662 1.23996 1.04746 1.57253 1.17980 0.83374 0.84067 0.79637 1.90717 1.25393 1.82960 1.39128 1.20257 0.98257 0.93201 1.04922 1.21081 0.95085 0.96842 0.95268 1.20896 0.99549 0.92884 1.02666 1.19353 0.93700 0.93489 0.96537 1.24826 1.11375 0.89828 0.93851 1.86515 1.94768 1.22828 1.30731 0.85714 0.76645 0.81494 0.79178 1.16856 1.17859 1.17155 1.21306 0.98393 0.96276 0.98324 1.18448 0.88061 0.90610 0.89928 1.84779 1.18571 1.90734 1.34500 1.24490 0.98968 0.91738 0.98648 1.77459 1.01205 1.12300 1.19497 0.91024 0.91252 0.90979 0.90989 0.90592 0.90856 0.91104 0.90765 0.91136 0.87706 0.88350 0.80751 0.75666 0.84825 0.85278 0.89954 0.76886 0.83993 0.74314 0.77834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.03 8.65 101.05 0.87 0.90 16 2 Si 1.02 -2.97 12.79 -169.99 -2.17 -5.14 16 3 C -0.45 1.24 8.65 101.05 0.87 2.12 16 4 C -0.45 1.02 8.65 101.05 0.87 1.89 16 5 C -0.17 0.27 5.59 59.85 0.33 0.61 16 6 N -0.34 -0.52 3.01 -9.17 -0.03 -0.55 16 7 C 0.01 0.01 11.44 -16.67 -0.19 -0.19 16 8 C 0.00 -0.01 6.90 -83.89 -0.58 -0.58 16 9 N -0.64 -0.45 5.42 -10.98 -0.06 -0.51 16 10 C 0.56 1.65 7.74 -12.47 -0.10 1.55 16 11 O -0.51 -2.96 12.31 -16.61 -0.20 -3.16 16 12 C -0.16 -0.24 5.89 -104.85 -0.62 -0.86 16 13 C -0.06 0.06 9.54 -39.20 -0.37 -0.31 16 14 C -0.14 0.09 8.65 -39.64 -0.34 -0.25 16 15 C -0.03 -0.01 5.43 -104.57 -0.57 -0.57 16 16 C -0.09 0.15 2.81 36.00 0.10 0.25 16 17 O -0.54 0.40 12.74 -35.23 -0.45 -0.05 16 18 Si 0.95 -1.97 25.05 -169.99 -4.26 -6.23 16 19 H -0.25 0.16 7.11 56.52 0.40 0.57 16 20 H -0.25 0.43 7.11 56.52 0.40 0.84 16 21 H -0.25 0.47 7.11 56.52 0.40 0.87 16 22 C -0.12 -0.13 9.53 -39.48 -0.38 -0.51 16 23 C 0.18 0.37 6.72 -38.70 -0.26 0.11 16 24 O -0.47 -1.30 11.58 -40.55 -0.47 -1.77 16 25 C 0.05 0.23 10.84 -17.22 -0.19 0.04 16 26 N -0.28 -1.31 12.56 30.70 0.39 -0.92 16 27 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 28 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 29 H 0.07 0.14 7.96 -51.93 -0.41 -0.28 16 30 H 0.07 -0.23 7.96 -51.93 -0.41 -0.65 16 31 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 32 H 0.07 -0.19 7.96 -51.93 -0.41 -0.61 16 33 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.22 7.96 -51.93 -0.41 -0.64 16 36 H 0.10 -0.15 7.96 -51.93 -0.41 -0.57 16 37 H 0.10 -0.37 7.96 -51.93 -0.41 -0.79 16 38 H 0.18 -0.59 8.06 -52.49 -0.42 -1.01 16 39 H 0.41 -1.14 6.85 -40.82 -0.28 -1.42 16 40 H 0.13 -0.57 6.40 -52.48 -0.34 -0.91 16 41 H 0.13 -0.30 4.85 -52.49 -0.25 -0.56 16 42 H 0.08 -0.30 7.96 -51.93 -0.41 -0.71 16 43 H 0.38 -1.97 8.74 45.56 0.40 -1.57 16 44 H 0.14 0.04 8.06 -52.49 -0.42 -0.38 16 45 H 0.40 -0.49 9.06 45.56 0.41 -0.08 16 46 H 0.21 1.14 5.91 -52.49 -0.31 0.83 16 LS Contribution 387.28 15.07 5.84 5.84 Total: 0.00 -10.92 387.28 -6.92 -17.85 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: -4.97 Total: -9.55 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.53 Total: 4.20 kcal Atomic # 7 Polarization: -2.28 SS G_CDS: 0.30 Total: -1.98 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -1.12 Total: -4.98 kcal Atomic # 14 Polarization: -4.94 SS G_CDS: -6.43 Total: -11.38 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -10.92 -6.92 -17.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608520_13422076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.715 kcal (2) G-P(sol) polarization free energy of solvation -10.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds