Wall clock time and date at job start Tue Mar 9 2021 16:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 C 1.53006 * 109.46737 * 119.99242 * 2 1 3 5 5 H 1.08995 * 109.47312 * 300.00023 * 4 2 1 6 6 C 1.52998 * 109.47063 * 60.00518 * 4 2 1 7 7 C 1.52998 * 109.47271 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.46878 * 299.99723 * 7 6 4 9 9 H 1.09002 * 109.47189 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47246 * 300.00276 * 8 7 6 11 11 C 1.34781 * 120.00115 * 204.99926 * 10 8 7 12 12 O 1.21593 * 119.99676 * 359.97438 * 11 10 8 13 13 C 1.47569 * 120.00051 * 179.97438 * 11 10 8 14 14 C 1.40204 * 119.83506 * 0.22588 * 13 11 10 15 15 C 1.36233 * 120.37861 * 180.24007 * 14 13 11 16 16 C 1.39878 * 119.95960 * 359.77954 * 15 14 13 17 17 C 1.46262 * 133.84063 * 180.02562 * 16 15 14 18 18 C 1.50691 * 126.48047 * 359.97385 * 17 16 15 19 19 O 1.42900 * 109.47401 * 75.02475 * 18 17 16 20 20 Si 1.86308 * 109.46832 * 195.02524 * 18 17 16 21 21 C 1.34453 * 107.03470 * 179.97438 * 17 16 15 22 22 N 1.36571 * 109.98784 * 0.02562 * 21 17 16 23 23 C 1.37833 * 109.85601 * 359.97438 * 22 21 17 24 24 C 1.38650 * 133.37749 * 180.02562 * 23 22 21 25 25 C 1.53007 * 109.46975 * 59.99944 * 8 7 6 26 26 C 1.52992 * 109.47062 * 299.99853 * 25 8 7 27 27 H 1.08995 * 109.47239 * 300.00690 * 1 2 3 28 28 H 1.09007 * 109.46614 * 60.00613 * 1 2 3 29 29 H 1.09001 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47868 * 239.99617 * 2 1 3 31 31 H 1.08998 * 109.47152 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.46880 * 299.99224 * 3 2 1 33 33 H 1.08998 * 109.47563 * 59.98790 * 3 2 1 34 34 H 1.09004 * 109.46911 * 59.99828 * 6 4 2 35 35 H 1.09004 * 109.46992 * 299.99984 * 6 4 2 36 36 H 1.08991 * 109.47086 * 180.02562 * 7 6 4 37 37 H 1.08995 * 109.47219 * 59.99435 * 7 6 4 38 38 H 0.97000 * 119.99990 * 24.99746 * 10 8 7 39 39 H 1.08001 * 119.80939 * 0.02562 * 14 13 11 40 40 H 1.07999 * 120.01957 * 179.75381 * 15 14 13 41 41 H 1.09001 * 109.47572 * 315.02390 * 18 17 16 42 42 H 0.96710 * 113.99621 * 59.99983 * 19 18 17 43 43 H 1.48494 * 110.00106 * 58.68361 * 20 18 17 44 44 H 1.48506 * 109.99547 * 180.02562 * 20 18 17 45 45 H 1.07998 * 125.01125 * 180.02562 * 21 17 16 46 46 H 0.96998 * 125.07065 * 179.97438 * 22 21 17 47 47 H 1.08002 * 120.16454 * 359.92463 * 24 23 22 48 48 H 1.09004 * 109.46787 * 59.99925 * 25 8 7 49 49 H 1.09004 * 109.47023 * 179.97438 * 25 8 7 50 50 H 1.08995 * 109.47596 * 299.99876 * 26 25 8 51 51 H 1.09001 * 109.46915 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.6766 -0.2072 2.1393 6 6 1.5300 -2.1636 1.2495 7 6 2.0393 -2.8846 2.4991 8 6 3.5694 -2.8846 2.4999 9 1 3.9323 -3.3978 3.3904 10 7 4.0583 -3.5754 1.3041 11 6 5.2803 -4.1439 1.3066 12 8 5.9771 -4.0830 2.3012 13 6 5.7726 -4.8403 0.1022 14 6 4.9681 -4.9043 -1.0443 15 6 5.4095 -5.5485 -2.1605 16 6 6.6739 -6.1466 -2.1679 17 6 7.4347 -6.8952 -3.1679 18 6 6.9873 -7.2314 -4.5670 19 8 7.0665 -6.0632 -5.3861 20 14 8.0902 -8.5585 -5.2696 21 6 8.6088 -7.2267 -2.6026 22 7 8.6613 -6.7521 -1.3231 23 6 7.4931 -6.0851 -1.0228 24 6 7.0359 -5.4277 0.1091 25 6 4.0793 -1.4420 2.4998 26 6 3.5700 -0.7211 1.2501 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8898 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6765 1.9565 0.8898 34 1 1.8934 -2.6775 0.3595 35 1 0.4399 -2.1636 1.2494 36 1 1.6764 -3.9123 2.4989 37 1 1.6756 -2.3705 3.3888 38 1 3.5025 -3.6236 0.5106 39 1 3.9915 -4.4432 -1.0413 40 1 4.7834 -5.5977 -3.0392 41 1 5.9580 -7.5894 -4.5433 42 1 7.9559 -5.6893 -5.4530 43 1 8.0412 -9.7678 -4.4092 44 1 7.6597 -8.8986 -6.6496 45 1 9.3946 -7.7858 -3.0887 46 1 9.4092 -6.8673 -0.7162 47 1 7.6543 -5.3748 0.9930 48 1 3.7155 -0.9280 3.3895 49 1 5.1694 -1.4420 2.5007 50 1 3.9337 -1.2351 0.3605 51 1 3.9337 0.3064 1.2498 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623128_12335838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:02:53 Heat of formation + Delta-G solvation = -26.567865 kcal Electronic energy + Delta-G solvation = -30335.813981 eV Core-core repulsion = 26393.978432 eV Total energy + Delta-G solvation = -3941.835549 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.46781 -41.41006 -39.76394 -37.89378 -37.44932 -36.64835 -33.83118 -33.23873 -31.92927 -30.90550 -30.71945 -29.43786 -28.00219 -26.47389 -25.03860 -23.75895 -23.64519 -23.35458 -21.75937 -20.86498 -20.76012 -20.18666 -19.44394 -18.41974 -17.64942 -17.03723 -16.98185 -16.74033 -16.19315 -16.11737 -15.64754 -15.54615 -15.23175 -15.13803 -15.01421 -14.87125 -14.77098 -14.62097 -14.36175 -14.29687 -14.10533 -14.01078 -13.37934 -13.13860 -13.07007 -13.04685 -12.67728 -12.58923 -12.29280 -12.28355 -12.22900 -12.04685 -12.01892 -11.92646 -11.69475 -11.30775 -11.10683 -10.96880 -10.82916 -10.78285 -10.29066 -10.10092 -9.37009 -8.79131 -4.96770 -0.32549 0.35645 1.39175 1.42443 1.72123 1.91834 1.93646 2.06026 2.28624 2.85914 3.57707 3.62812 3.66993 3.69928 3.74507 3.78686 3.89182 3.92445 4.04949 4.09821 4.13049 4.24843 4.30546 4.33323 4.39737 4.48954 4.53052 4.55359 4.57863 4.60099 4.65749 4.68812 4.76469 4.80661 4.83737 4.95413 4.98861 5.03433 5.06909 5.10423 5.14836 5.18781 5.20848 5.22835 5.31132 5.36858 5.38556 5.40575 5.47484 5.55466 5.57231 5.61135 5.63787 5.97366 6.47627 6.54593 6.90855 7.15001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.076 4.076 5 H 0.071 0.929 6 C -0.116 4.116 7 C -0.121 4.121 8 C 0.145 3.855 9 H 0.068 0.932 10 N -0.703 5.703 11 C 0.560 3.440 12 O -0.583 6.583 13 C -0.137 4.137 14 C -0.108 4.108 15 C -0.085 4.085 16 C -0.082 4.082 17 C -0.235 4.235 18 C -0.039 4.039 19 O -0.561 6.561 20 Si 0.795 3.205 21 C 0.096 3.904 22 N -0.577 5.577 23 C 0.067 3.933 24 C -0.067 4.067 25 C -0.127 4.127 26 C -0.109 4.109 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.410 0.590 39 H 0.147 0.853 40 H 0.136 0.864 41 H 0.096 0.904 42 H 0.393 0.607 43 H -0.285 1.285 44 H -0.306 1.306 45 H 0.220 0.780 46 H 0.435 0.565 47 H 0.128 0.872 48 H 0.079 0.921 49 H 0.043 0.957 50 H 0.057 0.943 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -0.521 -2.945 3.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.209 4.209 4 C -0.095 4.095 5 H 0.089 0.911 6 C -0.153 4.153 7 C -0.159 4.159 8 C 0.041 3.959 9 H 0.086 0.914 10 N -0.356 5.356 11 C 0.349 3.651 12 O -0.464 6.464 13 C -0.142 4.142 14 C -0.128 4.128 15 C -0.104 4.104 16 C -0.087 4.087 17 C -0.242 4.242 18 C -0.149 4.149 19 O -0.369 6.369 20 Si 0.700 3.300 21 C -0.033 4.033 22 N -0.180 5.180 23 C -0.040 4.040 24 C -0.088 4.088 25 C -0.166 4.166 26 C -0.147 4.147 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.249 0.751 39 H 0.164 0.836 40 H 0.154 0.846 41 H 0.114 0.886 42 H 0.243 0.757 43 H -0.212 1.212 44 H -0.234 1.234 45 H 0.236 0.764 46 H 0.275 0.725 47 H 0.146 0.854 48 H 0.098 0.902 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.268 -1.390 -2.519 3.144 hybrid contribution -0.408 0.192 0.467 0.649 sum 0.860 -1.198 -2.052 2.527 Atomic orbital electron populations 1.21900 0.94968 1.02193 1.01604 1.21113 0.95865 0.95891 0.97932 1.21909 1.01056 0.96272 1.01629 1.21172 0.94283 0.95840 0.98180 0.91073 1.21666 1.01507 0.94759 0.97370 1.21804 0.91942 1.01928 1.00196 1.20987 0.95138 0.92241 0.87514 0.91360 1.45938 1.16781 1.55276 1.17576 1.18380 0.81718 0.77896 0.87084 1.90754 1.57610 1.62005 1.36066 1.19489 0.95913 1.04066 0.94695 1.20848 1.00043 1.00253 0.91647 1.20383 0.94481 0.96917 0.98599 1.19576 0.95062 1.00570 0.93518 1.20853 0.96417 1.09478 0.97452 1.24548 1.06334 0.96529 0.87490 1.86464 1.36770 1.44543 1.69134 0.94052 0.85870 0.74700 0.75346 1.22368 0.98742 0.98189 0.83966 1.41821 1.15629 1.46796 1.13787 1.18115 0.89173 1.00934 0.95790 1.20132 0.95531 0.96854 0.96301 1.21871 0.99785 0.95250 0.99670 1.21561 0.95715 1.00151 0.97261 0.92851 0.93054 0.91747 0.91350 0.92662 0.92924 0.92841 0.91666 0.90142 0.90695 0.89461 0.75115 0.83578 0.84567 0.88647 0.75720 1.21182 1.23374 0.76409 0.72471 0.85398 0.90249 0.93856 0.92415 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.46 8.84 71.98 0.64 1.10 16 2 C -0.09 0.24 2.51 -10.79 -0.03 0.21 16 3 C -0.15 0.21 8.84 71.98 0.64 0.85 16 4 C -0.08 0.24 1.77 -10.79 -0.02 0.22 16 5 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 6 C -0.12 0.56 4.68 30.59 0.14 0.70 16 7 C -0.12 0.40 5.61 30.60 0.17 0.57 16 8 C 0.15 0.25 2.78 45.00 0.13 0.38 16 9 H 0.07 0.42 7.58 -2.39 -0.02 0.41 16 10 N -0.70 -1.46 4.18 -445.64 -1.86 -3.32 16 11 C 0.56 4.82 7.72 86.70 0.67 5.49 16 12 O -0.58 -9.52 15.98 -4.01 -0.06 -9.59 16 13 C -0.14 -0.87 5.87 -20.08 -0.12 -0.98 16 14 C -0.11 -0.24 9.46 22.28 0.21 -0.03 16 15 C -0.09 -0.29 10.03 22.20 0.22 -0.07 16 16 C -0.08 -0.36 6.35 -20.14 -0.13 -0.49 16 17 C -0.23 0.07 5.57 -18.65 -0.10 -0.04 16 18 C -0.04 0.05 3.06 71.23 0.22 0.26 16 19 O -0.56 -0.06 12.88 -148.98 -1.92 -1.98 16 20 Si 0.79 -3.82 30.75 68.60 2.11 -1.71 16 21 C 0.10 -0.53 10.43 83.09 0.87 0.33 16 22 N -0.58 1.83 6.07 -187.70 -1.14 0.69 16 23 C 0.07 0.25 7.26 38.96 0.28 0.53 16 24 C -0.07 -0.44 9.61 22.63 0.22 -0.22 16 25 C -0.13 -0.27 5.60 30.59 0.17 -0.10 16 26 C -0.11 0.05 4.69 30.59 0.14 0.19 16 27 H 0.05 -0.14 8.14 -2.39 -0.02 -0.15 16 28 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 29 H 0.06 -0.28 6.43 -2.39 -0.02 -0.29 16 30 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.05 -0.04 6.43 -2.39 -0.02 -0.06 16 32 H 0.05 -0.06 8.14 -2.38 -0.02 -0.08 16 33 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.06 -0.38 6.51 -2.39 -0.02 -0.40 16 35 H 0.08 -0.46 6.43 -2.39 -0.02 -0.48 16 36 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.41 -1.10 4.86 -92.71 -0.45 -1.55 16 39 H 0.15 -0.54 6.36 -2.91 -0.02 -0.56 16 40 H 0.14 0.17 8.06 -2.91 -0.02 0.14 16 41 H 0.10 0.13 7.96 -2.39 -0.02 0.11 16 42 H 0.39 -3.23 8.70 -74.05 -0.64 -3.87 16 43 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 44 H -0.31 -1.15 7.11 99.48 0.71 -0.45 16 45 H 0.22 -3.21 6.35 -2.91 -0.02 -3.22 16 46 H 0.43 -3.82 8.96 -92.71 -0.83 -4.65 16 47 H 0.13 0.90 7.62 -2.91 -0.02 0.88 16 48 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.06 0.03 7.60 -2.39 -0.02 0.01 16 51 H 0.06 0.02 6.43 -2.39 -0.02 0.01 16 Total: 0.00 -21.97 392.45 0.52 -21.45 By element: Atomic # 1 Polarization: -13.52 SS G_CDS: -0.92 Total: -14.45 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 4.32 Total: 8.92 kcal Atomic # 7 Polarization: 0.37 SS G_CDS: -3.00 Total: -2.64 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -1.98 Total: -11.57 kcal Atomic # 14 Polarization: -3.82 SS G_CDS: 2.11 Total: -1.71 kcal Total: -21.97 0.52 -21.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623128_12335838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.120 kcal (2) G-P(sol) polarization free energy of solvation -21.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds