Wall clock time and date at job start Tue Mar 9 2021 12:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38980 * 119.95195 * 2 1 4 4 O 1.35704 * 119.91304 * 0.02562 * 3 2 1 5 5 C 1.39011 * 120.17166 * 179.97438 * 3 2 1 6 6 C 1.50698 * 119.95791 * 180.02562 * 5 3 2 7 7 O 1.42903 * 109.47136 * 285.00379 * 6 5 3 8 8 Si 1.86298 * 109.47692 * 165.00067 * 6 5 3 9 9 C 1.37692 * 120.08899 * 359.76596 * 5 3 2 10 10 C 1.39746 * 119.90972 * 0.48512 * 9 5 3 11 11 C 1.47606 * 120.08820 * 179.76069 * 10 9 5 12 12 O 1.21585 * 119.99613 * 359.73473 * 11 10 9 13 13 N 1.34774 * 120.00183 * 179.72942 * 11 10 9 14 14 C 1.46496 * 120.00029 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47062 * 324.99489 * 14 13 11 16 16 C 1.53000 * 109.47631 * 84.99851 * 14 13 11 17 17 C 1.53002 * 109.47233 * 59.99724 * 16 14 13 18 18 C 1.53006 * 109.46711 * 59.99999 * 17 16 14 19 19 H 1.09002 * 109.46589 * 60.00635 * 18 17 16 20 20 C 1.53002 * 109.46711 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.47233 * 300.00001 * 20 18 17 22 22 C 1.52997 * 109.46817 * 180.02562 * 20 18 17 23 23 C 1.52997 * 109.47445 * 300.00304 * 18 17 16 24 24 C 1.52997 * 109.46953 * 204.99984 * 14 13 11 25 25 C 1.37722 * 119.95491 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47308 * 270.02076 * 1 2 3 27 27 H 1.09001 * 109.47379 * 30.01743 * 1 2 3 28 28 H 1.09005 * 109.47408 * 150.02408 * 1 2 3 29 29 H 0.96702 * 113.99993 * 90.00106 * 4 3 2 30 30 H 1.09006 * 109.46862 * 44.99716 * 6 5 3 31 31 H 0.96703 * 113.99812 * 299.99630 * 7 6 5 32 32 H 1.48497 * 110.00414 * 180.02562 * 8 6 5 33 33 H 1.48508 * 109.99879 * 301.32249 * 8 6 5 34 34 H 1.08004 * 120.04376 * 180.28033 * 9 5 3 35 35 H 0.97001 * 119.99990 * 359.97438 * 13 11 10 36 36 H 1.08992 * 109.47399 * 179.97438 * 16 14 13 37 37 H 1.09004 * 109.46724 * 300.00376 * 16 14 13 38 38 H 1.09002 * 109.47075 * 300.00932 * 17 16 14 39 39 H 1.08996 * 109.47407 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.47070 * 60.00376 * 20 18 17 41 41 H 1.09001 * 109.47194 * 179.97438 * 21 20 18 42 42 H 1.08992 * 109.47399 * 300.00166 * 21 20 18 43 43 H 1.09004 * 109.46724 * 60.00652 * 21 20 18 44 44 H 1.09002 * 109.47153 * 60.00231 * 22 20 18 45 45 H 1.08998 * 109.47533 * 179.97438 * 22 20 18 46 46 H 1.08996 * 109.47853 * 300.00202 * 22 20 18 47 47 H 1.09000 * 109.47140 * 180.02562 * 23 18 17 48 48 H 1.09002 * 109.47045 * 300.00058 * 23 18 17 49 49 H 1.09002 * 109.47153 * 179.97438 * 24 14 13 50 50 H 1.08996 * 109.47853 * 59.99808 * 24 14 13 51 51 H 1.08002 * 120.04193 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2042 0.0000 4 8 1.5196 2.3778 0.0005 5 6 3.5910 1.2095 0.0005 6 6 4.3385 2.5180 0.0011 7 8 4.2725 3.1049 -1.3001 8 14 6.1196 2.2157 0.4563 9 6 4.2859 0.0208 0.0059 10 6 3.5918 -1.1921 0.0006 11 6 4.3328 -2.4687 0.0011 12 8 5.5486 -2.4658 0.0012 13 7 3.6616 -3.6374 0.0014 14 6 4.3970 -4.9044 0.0024 15 1 5.3077 -4.7964 -0.5868 16 6 4.7613 -5.2817 1.4397 17 6 3.4831 -5.4333 2.2668 18 6 2.6086 -6.5310 1.6574 19 1 3.1558 -7.4737 1.6582 20 6 1.3307 -6.6831 2.4849 21 6 1.6955 -7.0607 3.9220 22 6 0.4565 -7.7812 1.8759 23 6 2.2444 -6.1539 0.2201 24 6 3.5226 -6.0021 -0.6069 25 6 2.1947 -1.1932 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.3225 2.7178 0.8841 30 1 3.8874 3.1938 0.7278 31 1 4.6564 2.5573 -1.9986 32 1 6.8675 3.4986 0.4610 33 1 6.2004 1.5763 1.7942 34 1 5.3659 0.0258 0.0109 35 1 2.6916 -3.6397 0.0018 36 1 5.3081 -6.2246 1.4405 37 1 5.3843 -4.4996 1.8738 38 1 2.9359 -4.4906 2.2661 39 1 3.7426 -5.7025 3.2907 40 1 0.7833 -5.7405 2.4846 41 1 0.7851 -7.1686 4.5116 42 1 2.2428 -8.0032 3.9222 43 1 2.3184 -6.2786 4.3561 44 1 1.0041 -8.7237 1.8765 45 1 -0.4537 -7.8899 2.4655 46 1 0.1966 -7.5128 0.8519 47 1 1.6210 -6.9357 -0.2139 48 1 1.6972 -5.2111 0.2194 49 1 4.0699 -6.9447 -0.6066 50 1 3.2631 -5.7335 -1.6309 51 1 1.6546 -2.1285 0.0014 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623128_13287732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:02 Heat of formation + Delta-G solvation = -106.383160 kcal Electronic energy + Delta-G solvation = -30180.820698 eV Core-core repulsion = 26238.720098 eV Total energy + Delta-G solvation = -3942.100600 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.198 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.85654 -40.95196 -39.59476 -37.86147 -37.51122 -36.63878 -34.12172 -33.80146 -31.90556 -31.77572 -29.65221 -27.99882 -27.99376 -26.89523 -25.08935 -23.76288 -23.33664 -22.11529 -21.70554 -20.82471 -20.17996 -19.55225 -18.90589 -18.07908 -17.27420 -16.87080 -16.76449 -16.42224 -16.15065 -15.91487 -15.57805 -15.36713 -15.09605 -14.94649 -14.75681 -14.62197 -14.39196 -14.30105 -14.18590 -14.10461 -13.87335 -13.36261 -13.28402 -13.09911 -13.06672 -12.90460 -12.80893 -12.58600 -12.35389 -12.22651 -12.20158 -12.03018 -12.00066 -11.68598 -11.62236 -11.29344 -11.07623 -10.95156 -10.80339 -10.47469 -10.13789 -9.96898 -9.64913 -5.06127 -0.39880 0.06458 1.20110 1.52982 1.64438 1.83688 2.08680 2.57501 3.10264 3.36366 3.55685 3.57498 3.68253 3.71318 3.75135 3.80528 4.00839 4.06813 4.14259 4.15762 4.27040 4.32710 4.35096 4.41264 4.44820 4.57625 4.59533 4.62624 4.67847 4.69123 4.72029 4.79238 4.81996 4.84425 5.00857 5.02647 5.04349 5.05239 5.10273 5.13011 5.17988 5.19338 5.21167 5.24729 5.31450 5.32936 5.38468 5.40148 5.53146 5.58794 5.59544 5.64995 6.47280 6.68576 6.70440 7.14783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C 0.153 3.847 4 O -0.495 6.495 5 C -0.158 4.158 6 C -0.051 4.051 7 O -0.548 6.548 8 Si 0.742 3.258 9 C -0.056 4.056 10 C -0.150 4.150 11 C 0.558 3.442 12 O -0.574 6.574 13 N -0.703 5.703 14 C 0.146 3.854 15 H 0.071 0.929 16 C -0.128 4.128 17 C -0.110 4.110 18 C -0.077 4.077 19 H 0.068 0.932 20 C -0.089 4.089 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.056 4.056 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.409 0.591 30 H 0.113 0.887 31 H 0.392 0.608 32 H -0.287 1.287 33 H -0.291 1.291 34 H 0.141 0.859 35 H 0.410 0.590 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 -4.544 -0.043 7.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.121 4.121 3 C 0.107 3.893 4 O -0.309 6.309 5 C -0.159 4.159 6 C -0.162 4.162 7 O -0.355 6.355 8 Si 0.648 3.352 9 C -0.075 4.075 10 C -0.153 4.153 11 C 0.346 3.654 12 O -0.454 6.454 13 N -0.356 5.356 14 C 0.042 3.958 15 H 0.090 0.910 16 C -0.167 4.167 17 C -0.147 4.147 18 C -0.096 4.096 19 H 0.087 0.913 20 C -0.107 4.107 21 C -0.210 4.210 22 C -0.207 4.207 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.075 4.075 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.269 0.731 30 H 0.130 0.870 31 H 0.241 0.759 32 H -0.214 1.214 33 H -0.217 1.217 34 H 0.158 0.842 35 H 0.249 0.751 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.103 0.897 50 H 0.095 0.905 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.450 -3.988 0.248 5.981 hybrid contribution -0.560 0.374 0.948 1.163 sum -5.010 -3.614 1.196 6.293 Atomic orbital electron populations 1.20767 0.88314 1.04153 1.03612 1.20436 0.98309 0.91715 1.01601 1.18471 0.88792 0.85877 0.96129 1.84737 1.75507 1.35727 1.34899 1.20633 0.94246 0.95703 1.05327 1.24818 1.09039 0.92956 0.89425 1.86509 1.84836 1.47608 1.16553 0.93778 0.76293 0.80774 0.84325 1.20996 0.99993 0.90639 0.95852 1.19854 0.94288 0.92850 1.08273 1.18345 0.86858 0.84497 0.75667 1.90782 1.14981 1.88072 1.51614 1.45934 1.10872 1.04805 1.73963 1.20980 0.95509 0.82735 0.96564 0.91041 1.21878 0.98104 1.01471 0.95236 1.21567 0.95402 0.98940 0.98796 1.21179 0.95344 0.98428 0.94619 0.91311 1.21109 0.95811 0.99201 0.94572 1.21917 1.01258 1.01336 0.96443 1.21903 0.99261 0.98362 1.01191 1.21661 0.96889 1.02333 0.94367 1.21803 0.96587 0.98004 0.99518 1.21331 0.91796 0.98853 0.95523 0.89720 0.91212 0.89609 0.73066 0.86968 0.75851 1.21396 1.21748 0.84182 0.75104 0.90427 0.93763 0.92161 0.92050 0.91088 0.92976 0.93004 0.92665 0.93032 0.93109 0.91595 0.90229 0.91376 0.89675 0.90476 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.68 9.78 71.24 0.70 1.37 16 2 C -0.12 0.25 5.89 -19.81 -0.12 0.13 16 3 C 0.15 0.14 6.66 22.63 0.15 0.29 16 4 O -0.50 -0.05 11.84 -90.25 -1.07 -1.12 16 5 C -0.16 -0.31 5.27 -19.81 -0.10 -0.41 16 6 C -0.05 -0.10 2.37 71.24 0.17 0.07 16 7 O -0.55 -1.85 12.88 -148.98 -1.92 -3.77 16 8 Si 0.74 1.78 29.91 68.60 2.05 3.84 16 9 C -0.06 -0.17 8.20 22.51 0.18 0.02 16 10 C -0.15 -0.27 5.87 -20.08 -0.12 -0.38 16 11 C 0.56 2.47 7.73 86.72 0.67 3.14 16 12 O -0.57 -7.04 16.00 -3.98 -0.06 -7.11 16 13 N -0.70 1.32 4.18 -445.64 -1.86 -0.55 16 14 C 0.15 -0.20 2.78 44.99 0.13 -0.07 16 15 H 0.07 0.22 7.58 -2.39 -0.02 0.20 16 16 C -0.13 0.04 5.60 30.60 0.17 0.21 16 17 C -0.11 0.32 4.69 30.60 0.14 0.47 16 18 C -0.08 0.42 1.77 -10.79 -0.02 0.40 16 19 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 20 C -0.09 0.43 2.51 -10.79 -0.03 0.41 16 21 C -0.15 0.46 8.84 71.98 0.64 1.10 16 22 C -0.15 0.75 8.84 71.98 0.64 1.38 16 23 C -0.12 0.88 4.68 30.59 0.14 1.02 16 24 C -0.12 0.74 5.61 30.59 0.17 0.91 16 25 C -0.06 0.18 9.18 22.50 0.21 0.39 16 26 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 27 H 0.07 -0.26 7.52 -2.39 -0.02 -0.28 16 28 H 0.09 -0.75 8.08 -2.38 -0.02 -0.76 16 29 H 0.41 -3.40 9.06 -74.06 -0.67 -4.07 16 30 H 0.11 0.15 7.82 -2.38 -0.02 0.13 16 31 H 0.39 -1.51 8.70 -74.05 -0.64 -2.16 16 32 H -0.29 -2.41 7.11 99.48 0.71 -1.71 16 33 H -0.29 -2.39 7.11 99.48 0.71 -1.68 16 34 H 0.14 0.43 4.69 -2.91 -0.01 0.41 16 35 H 0.41 -2.95 4.89 -92.71 -0.45 -3.41 16 36 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.04 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.06 -0.17 7.60 -2.39 -0.02 -0.18 16 39 H 0.06 -0.10 6.43 -2.39 -0.02 -0.11 16 40 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.05 -0.14 6.43 -2.39 -0.02 -0.15 16 44 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.07 -0.42 6.43 -2.39 -0.02 -0.44 16 47 H 0.08 -0.65 6.43 -2.39 -0.02 -0.67 16 48 H 0.07 -0.65 6.51 -2.39 -0.02 -0.66 16 49 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 50 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 51 H 0.16 -1.53 6.39 -2.91 -0.02 -1.55 16 Total: 0.00 -18.60 389.44 0.09 -18.52 By element: Atomic # 1 Polarization: -19.47 SS G_CDS: -0.77 Total: -20.24 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 3.72 Total: 10.44 kcal Atomic # 7 Polarization: 1.32 SS G_CDS: -1.86 Total: -0.55 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -3.05 Total: -12.00 kcal Atomic # 14 Polarization: 1.78 SS G_CDS: 2.05 Total: 3.84 kcal Total: -18.60 0.09 -18.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623128_13287732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.867 kcal (2) G-P(sol) polarization free energy of solvation -18.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds