Wall clock time and date at job start Tue Mar 9 2021 12:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46943 * 2 1 4 4 C 1.52996 * 109.47238 * 120.00061 * 2 1 3 5 5 H 1.09007 * 109.47439 * 300.00270 * 4 2 1 6 6 C 1.52999 * 109.47393 * 60.00312 * 4 2 1 7 7 C 1.52996 * 109.47393 * 179.97438 * 6 4 2 8 8 C 1.52993 * 109.47265 * 300.00195 * 7 6 4 9 9 H 1.08999 * 109.47271 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46877 * 299.99867 * 8 7 6 11 11 C 1.34775 * 120.00056 * 274.99818 * 10 8 7 12 12 O 1.21282 * 119.99996 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00333 * 179.97438 * 11 10 8 14 14 N 1.46499 * 109.47311 * 180.02562 * 13 11 10 15 15 C 1.36833 * 125.06197 * 265.00128 * 14 13 11 16 16 C 1.34232 * 109.93890 * 180.02562 * 15 14 13 17 17 C 1.50701 * 126.50328 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.47023 * 254.97628 * 17 16 15 19 19 Si 1.86301 * 109.46955 * 14.97648 * 17 16 15 20 20 C 1.46497 * 106.99890 * 359.97438 * 16 15 14 21 21 C 1.39586 * 134.03413 * 180.02562 * 20 16 15 22 22 C 1.36664 * 119.76595 * 180.02562 * 21 20 16 23 23 C 1.38793 * 120.52328 * 359.75017 * 22 21 20 24 24 C 1.37789 * 120.66875 * 0.51110 * 23 22 21 25 25 C 1.37685 * 125.06264 * 85.00489 * 14 13 11 26 26 C 1.52999 * 109.47580 * 59.99776 * 8 7 6 27 27 C 1.52996 * 109.47004 * 300.00384 * 26 8 7 28 28 H 1.09004 * 109.46600 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47160 * 299.99662 * 1 2 3 30 30 H 1.09005 * 109.46988 * 60.00203 * 1 2 3 31 31 H 1.08997 * 109.47667 * 240.00484 * 2 1 3 32 32 H 1.08997 * 109.47114 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47268 * 300.00128 * 3 2 1 34 34 H 1.09007 * 109.46783 * 60.00313 * 3 2 1 35 35 H 1.08997 * 109.46846 * 300.00357 * 6 4 2 36 36 H 1.08997 * 109.46996 * 59.99729 * 6 4 2 37 37 H 1.08996 * 109.47145 * 179.97438 * 7 6 4 38 38 H 1.09000 * 109.46656 * 60.00306 * 7 6 4 39 39 H 0.97001 * 119.99810 * 95.00020 * 10 8 7 40 40 H 1.09007 * 109.46594 * 59.99845 * 13 11 10 41 41 H 1.09004 * 109.47117 * 300.01111 * 13 11 10 42 42 H 1.07998 * 125.02824 * 359.97438 * 15 14 13 43 43 H 1.09000 * 109.47319 * 134.97080 * 17 16 15 44 44 H 0.96700 * 113.99739 * 179.97438 * 18 17 16 45 45 H 1.48509 * 109.99907 * 299.99737 * 19 17 16 46 46 H 1.48496 * 110.00118 * 61.31626 * 19 17 16 47 47 H 1.08002 * 120.12083 * 359.97438 * 21 20 16 48 48 H 1.07992 * 119.73997 * 180.02562 * 22 21 20 49 49 H 1.08000 * 119.66793 * 180.25694 * 23 22 21 50 50 H 1.08002 * 120.11439 * 179.77306 * 24 23 22 51 51 H 1.09000 * 109.46853 * 59.99576 * 26 8 7 52 52 H 1.08997 * 109.47351 * 179.97438 * 26 8 7 53 53 H 1.09003 * 109.47425 * 179.97438 * 27 26 8 54 54 H 1.08997 * 109.47271 * 299.99722 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2075 2.1393 6 6 1.5301 -2.1638 1.2492 7 6 2.0407 -2.8852 2.4981 8 6 3.5706 -2.8851 2.4975 9 1 3.9343 -3.3994 3.3870 10 7 4.0585 -3.5755 1.3010 11 6 4.1873 -4.9171 1.3025 12 8 3.8989 -5.5528 2.2942 13 6 4.6886 -5.6274 0.0715 14 7 4.7376 -7.0693 0.3257 15 6 5.8454 -7.7572 0.7403 16 6 5.5508 -9.0596 0.8775 17 6 6.4939 -10.1509 1.3142 18 8 6.8701 -10.9367 0.1815 19 14 8.0147 -9.3898 2.0748 20 6 4.1385 -9.2189 0.5223 21 6 3.2685 -10.3091 0.4691 22 6 1.9698 -10.1228 0.0863 23 6 1.5074 -8.8568 -0.2453 24 6 2.3505 -7.7677 -0.2048 25 6 3.6759 -7.9342 0.1828 26 6 4.0806 -1.4426 2.4975 27 6 3.5701 -0.7212 1.2487 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8901 35 1 0.4401 -2.1638 1.2492 36 1 1.8935 -2.6775 0.3592 37 1 1.6770 -3.9127 2.4983 38 1 1.6776 -2.3715 3.3883 39 1 4.2888 -3.0670 0.5077 40 1 5.6876 -5.2671 -0.1742 41 1 4.0154 -5.4283 -0.7623 42 1 6.8137 -7.3175 0.9284 43 1 5.9992 -10.7861 2.0490 44 1 7.4781 -11.6595 0.3888 45 1 8.6983 -8.5213 1.0829 46 1 7.6404 -8.5957 3.2725 47 1 3.6204 -11.2966 0.7287 48 1 1.2970 -10.9665 0.0457 49 1 0.4774 -8.7247 -0.5420 50 1 1.9821 -6.7872 -0.4681 51 1 3.7175 -0.9289 3.3877 52 1 5.1706 -1.4426 2.4976 53 1 3.9330 0.3067 1.2488 54 1 3.9330 -1.2348 0.3584 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623128_9818708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:59 Heat of formation + Delta-G solvation = -13.591424 kcal Electronic energy + Delta-G solvation = -32828.339984 eV Core-core repulsion = 28731.529517 eV Total energy + Delta-G solvation = -4096.810467 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.209 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.66737 -41.38203 -39.73699 -38.12681 -37.62326 -36.69703 -34.42578 -33.74912 -31.99468 -31.57822 -30.39653 -30.12039 -28.70240 -28.04308 -25.81687 -24.15962 -23.78077 -23.43433 -22.90969 -21.95852 -20.89461 -20.63922 -20.26692 -18.81195 -18.30094 -18.21788 -17.80820 -16.88176 -16.84924 -16.53205 -16.30917 -15.82994 -15.55950 -15.30256 -15.20305 -15.00790 -14.89922 -14.80932 -14.77279 -14.52264 -14.38740 -14.20734 -14.17856 -13.65102 -13.46691 -13.38040 -13.16885 -13.11143 -12.78937 -12.65710 -12.65042 -12.49458 -12.29344 -12.11684 -12.08152 -12.07232 -11.83225 -11.74085 -11.35808 -11.25350 -11.02939 -10.88735 -10.65322 -10.19433 -10.18860 -9.27350 -8.75025 -4.99257 0.03178 0.55866 1.29300 1.31136 1.35170 1.48967 1.67899 1.96428 2.11996 2.87456 3.43899 3.45956 3.56161 3.61273 3.62803 3.66391 3.72084 3.78139 3.94581 3.98673 3.99783 4.06299 4.16739 4.19811 4.20969 4.27844 4.33403 4.34508 4.48533 4.50270 4.52656 4.59327 4.59924 4.63500 4.69632 4.73750 4.79847 4.81903 4.93118 4.99399 5.01035 5.04280 5.05600 5.11114 5.12654 5.17319 5.25866 5.31361 5.33949 5.42829 5.44474 5.53108 5.57099 5.58930 5.64081 5.64692 6.03228 6.14026 6.37207 6.98929 7.03951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.150 4.150 4 C -0.078 4.078 5 H 0.066 0.934 6 C -0.107 4.107 7 C -0.126 4.126 8 C 0.149 3.851 9 H 0.060 0.940 10 N -0.701 5.701 11 C 0.492 3.508 12 O -0.572 6.572 13 C 0.085 3.915 14 N -0.467 5.467 15 C 0.052 3.948 16 C -0.179 4.179 17 C -0.046 4.046 18 O -0.565 6.565 19 Si 0.786 3.214 20 C -0.120 4.120 21 C -0.082 4.082 22 C -0.151 4.151 23 C -0.102 4.102 24 C -0.136 4.136 25 C 0.091 3.909 26 C -0.120 4.120 27 C -0.114 4.114 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.416 0.584 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.174 0.826 43 H 0.074 0.926 44 H 0.399 0.601 45 H -0.280 1.280 46 H -0.302 1.302 47 H 0.129 0.871 48 H 0.144 0.856 49 H 0.150 0.850 50 H 0.132 0.868 51 H 0.081 0.919 52 H 0.076 0.924 53 H 0.079 0.921 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 3.987 -2.507 5.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 C -0.208 4.208 4 C -0.096 4.096 5 H 0.085 0.915 6 C -0.144 4.144 7 C -0.165 4.165 8 C 0.044 3.956 9 H 0.078 0.922 10 N -0.356 5.356 11 C 0.277 3.723 12 O -0.450 6.450 13 C -0.039 4.039 14 N -0.149 5.149 15 C -0.073 4.073 16 C -0.187 4.187 17 C -0.156 4.156 18 O -0.374 6.374 19 Si 0.691 3.309 20 C -0.124 4.124 21 C -0.100 4.100 22 C -0.170 4.170 23 C -0.121 4.121 24 C -0.157 4.157 25 C -0.014 4.014 26 C -0.158 4.158 27 C -0.151 4.151 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.255 0.745 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.191 0.809 43 H 0.092 0.908 44 H 0.250 0.750 45 H -0.207 1.207 46 H -0.230 1.230 47 H 0.147 0.853 48 H 0.162 0.838 49 H 0.168 0.832 50 H 0.149 0.851 51 H 0.100 0.900 52 H 0.095 0.905 53 H 0.097 0.903 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.413 5.044 -1.944 5.920 hybrid contribution -0.719 0.287 -0.090 0.780 sum 1.694 5.331 -2.034 5.952 Atomic orbital electron populations 1.21918 0.95782 1.01698 1.01564 1.21104 0.95329 0.96245 0.97952 1.21909 1.01573 0.95736 1.01542 1.21181 0.95487 0.94846 0.98103 0.91548 1.21543 1.00416 0.95297 0.97142 1.21842 0.95079 0.99815 0.99757 1.20895 0.93786 0.93398 0.87475 0.92185 1.45946 1.66305 1.05659 1.17665 1.21329 0.77778 0.83318 0.89878 1.90789 1.50935 1.66899 1.36397 1.21980 1.07977 0.77343 0.96623 1.43372 1.07827 1.06341 1.57389 1.21714 0.91815 0.92034 1.01784 1.20045 0.93597 0.93729 1.11288 1.24226 1.04487 0.94717 0.92152 1.86481 1.69470 1.48225 1.33231 0.94279 0.78069 0.83101 0.75442 1.19356 0.93944 0.93595 1.05504 1.20504 0.93208 0.97600 0.98702 1.20981 0.95628 0.98296 1.02064 1.21191 1.00181 0.91797 0.98902 1.20248 0.89842 1.00476 1.05090 1.18475 0.90380 0.89376 1.03198 1.21786 1.01294 0.92486 1.00205 1.21653 0.94728 1.01329 0.97378 0.92569 0.93096 0.92887 0.90944 0.91645 0.93021 0.93092 0.92006 0.91744 0.94215 0.90876 0.74539 0.82886 0.83683 0.80861 0.90768 0.75037 1.20699 1.22979 0.85331 0.83774 0.83249 0.85054 0.90041 0.90542 0.90295 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 8.84 71.98 0.64 1.09 16 2 C -0.09 0.42 2.51 -10.79 -0.03 0.40 16 3 C -0.15 0.70 8.84 71.98 0.64 1.34 16 4 C -0.08 0.40 1.78 -10.79 -0.02 0.38 16 5 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 6 C -0.11 0.33 4.69 30.59 0.14 0.47 16 7 C -0.13 -0.07 5.60 30.59 0.17 0.10 16 8 C 0.15 -0.10 2.78 44.99 0.13 0.02 16 9 H 0.06 0.32 7.58 -2.39 -0.02 0.30 16 10 N -0.70 2.23 4.23 -442.54 -1.87 0.35 16 11 C 0.49 1.66 7.86 87.66 0.69 2.35 16 12 O -0.57 -8.59 16.08 -3.04 -0.05 -8.64 16 13 C 0.09 -0.13 6.48 85.63 0.55 0.42 16 14 N -0.47 -3.69 2.27 -519.98 -1.18 -4.87 16 15 C 0.05 0.50 9.89 83.00 0.82 1.32 16 16 C -0.18 -2.09 5.61 -18.62 -0.10 -2.20 16 17 C -0.05 -0.24 3.05 71.24 0.22 -0.02 16 18 O -0.56 -2.44 12.86 -148.98 -1.92 -4.35 16 19 Si 0.79 0.70 30.79 68.60 2.11 2.81 16 20 C -0.12 -1.64 6.35 -20.20 -0.13 -1.77 16 21 C -0.08 -0.87 10.05 22.23 0.22 -0.65 16 22 C -0.15 -1.09 9.97 22.03 0.22 -0.87 16 23 C -0.10 -0.63 10.01 22.30 0.22 -0.41 16 24 C -0.14 -1.09 10.00 22.37 0.22 -0.86 16 25 C 0.09 1.05 6.80 39.03 0.27 1.31 16 26 C -0.12 0.66 5.61 30.59 0.17 0.83 16 27 C -0.11 0.86 4.68 30.59 0.14 1.00 16 28 H 0.06 -0.15 6.43 -2.38 -0.02 -0.16 16 29 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.05 -0.14 8.14 -2.38 -0.02 -0.15 16 31 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.06 -0.40 6.43 -2.39 -0.02 -0.41 16 33 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.05 -0.18 8.14 -2.38 -0.02 -0.20 16 35 H 0.06 -0.10 6.43 -2.39 -0.02 -0.11 16 36 H 0.06 -0.25 7.60 -2.39 -0.02 -0.26 16 37 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.42 -4.03 6.87 -92.71 -0.64 -4.67 16 40 H 0.15 -1.31 8.12 -2.38 -0.02 -1.33 16 41 H 0.15 -1.04 8.14 -2.38 -0.02 -1.06 16 42 H 0.17 0.92 6.30 -2.91 -0.02 0.91 16 43 H 0.07 0.25 7.96 -2.39 -0.02 0.23 16 44 H 0.40 -2.78 8.74 -74.06 -0.65 -3.43 16 45 H -0.28 -1.39 7.04 99.48 0.70 -0.69 16 46 H -0.30 -2.54 7.11 99.48 0.71 -1.83 16 47 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 48 H 0.14 0.29 8.06 -2.91 -0.02 0.26 16 49 H 0.15 0.06 8.06 -2.91 -0.02 0.04 16 50 H 0.13 0.43 8.06 -2.91 -0.02 0.41 16 51 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 52 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 53 H 0.08 -0.62 6.43 -2.39 -0.02 -0.64 16 54 H 0.07 -0.71 6.51 -2.39 -0.02 -0.73 16 Total: 0.00 -26.59 418.97 1.93 -24.66 By element: Atomic # 1 Polarization: -13.87 SS G_CDS: -0.35 Total: -14.22 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.19 Total: 4.26 kcal Atomic # 7 Polarization: -1.46 SS G_CDS: -3.05 Total: -4.51 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -1.96 Total: -12.99 kcal Atomic # 14 Polarization: 0.70 SS G_CDS: 2.11 Total: 2.81 kcal Total: -26.59 1.93 -24.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623128_9818708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.067 kcal (2) G-P(sol) polarization free energy of solvation -26.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds