Wall clock time and date at job start Tue Mar 9 2021 12:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35451 * 125.56587 * 2 1 4 4 C 1.50704 * 126.06353 * 359.94629 * 3 2 1 5 5 O 1.42897 * 109.46702 * 150.02329 * 4 3 2 6 6 Si 1.86302 * 109.47202 * 30.02286 * 4 3 2 7 7 C 1.39830 * 107.86584 * 179.70656 * 3 2 1 8 8 C 1.50701 * 126.45968 * 180.30132 * 7 3 2 9 9 C 1.37867 * 107.08456 * 0.41950 * 7 3 2 10 10 C 1.46686 * 126.23496 * 179.84797 * 9 7 3 11 11 O 1.21693 * 119.99679 * 359.71400 * 10 9 7 12 12 N 1.34772 * 120.00037 * 179.71097 * 10 9 7 13 13 C 1.46506 * 119.99581 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47020 * 35.00522 * 13 12 10 15 15 C 1.52997 * 109.46741 * 155.00249 * 13 12 10 16 16 C 1.53006 * 109.47445 * 60.00197 * 15 13 12 17 17 C 1.53002 * 109.46711 * 59.99695 * 16 15 13 18 18 H 1.09002 * 109.47070 * 60.00376 * 17 16 15 19 19 N 1.46499 * 109.46799 * 180.02562 * 17 16 15 20 20 O 1.21799 * 120.00389 * 60.00118 * 19 17 16 21 21 O 1.21806 * 120.00139 * 239.99904 * 19 17 16 22 22 C 1.53000 * 109.47233 * 300.00001 * 17 16 15 23 23 C 1.53001 * 109.46886 * 60.00670 * 22 17 16 24 24 N 1.35532 * 125.56075 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47096 * 270.01398 * 1 2 3 26 26 H 1.08994 * 109.47415 * 30.01855 * 1 2 3 27 27 H 1.09007 * 109.47199 * 150.01890 * 1 2 3 28 28 H 1.09005 * 109.47137 * 270.02292 * 4 3 2 29 29 H 0.96707 * 113.99629 * 179.97438 * 5 4 3 30 30 H 1.48499 * 110.00024 * 60.00321 * 6 4 3 31 31 H 1.48505 * 109.99578 * 181.32121 * 6 4 3 32 32 H 1.09006 * 109.47204 * 270.16567 * 8 7 3 33 33 H 1.09006 * 109.46864 * 30.15982 * 8 7 3 34 34 H 1.08991 * 109.47169 * 150.16286 * 8 7 3 35 35 H 0.96991 * 120.00271 * 0.02562 * 12 10 9 36 36 H 1.09001 * 109.47375 * 300.00330 * 15 13 12 37 37 H 1.09002 * 109.47497 * 179.97438 * 15 13 12 38 38 H 1.09002 * 109.46589 * 300.00331 * 16 15 13 39 39 H 1.08996 * 109.47165 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.47194 * 179.97438 * 22 17 16 41 41 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 42 42 H 1.09000 * 109.47437 * 180.02562 * 23 22 17 43 43 H 1.09002 * 109.47508 * 59.99571 * 23 22 17 44 44 H 0.96994 * 125.68381 * 0.05590 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8199 2.5321 -0.0011 5 8 2.7769 3.3522 0.6723 6 14 0.1802 2.6426 0.8764 7 6 3.6269 0.6767 0.0068 8 6 4.8486 1.5591 0.0157 9 6 3.6122 -0.7019 0.0012 10 6 4.7860 -1.5816 0.0021 11 8 5.9049 -1.1031 0.0029 12 7 4.6253 -2.9197 0.0020 13 6 5.7977 -3.7982 0.0022 14 1 6.5930 -3.3424 0.5920 15 6 5.4216 -5.1502 0.6117 16 6 4.3051 -5.7900 -0.2161 17 6 4.7892 -5.9951 -1.6530 18 1 5.6615 -6.6487 -1.6527 19 7 3.7200 -6.6071 -2.4457 20 8 2.6526 -6.0345 -2.5738 21 8 3.8984 -7.6886 -2.9769 22 6 5.1652 -4.6430 -2.2624 23 6 6.2817 -4.0033 -1.4346 24 7 2.2952 -1.1026 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5136 28 1 1.7058 2.8762 -1.0291 29 1 2.5360 4.2881 0.7094 30 1 0.3224 2.1763 2.2791 31 1 -0.3142 4.0428 0.8542 32 1 5.1473 1.7764 -1.0099 33 1 4.6198 2.4911 0.5326 34 1 5.6620 1.0482 0.5306 35 1 3.7335 -3.3010 0.0010 36 1 5.0768 -5.0041 1.6353 37 1 6.2937 -5.8041 0.6115 38 1 3.4329 -5.1363 -0.2164 39 1 4.0376 -6.7534 0.2178 40 1 5.5105 -4.7892 -3.2859 41 1 4.2930 -3.9894 -2.2627 42 1 6.5493 -3.0399 -1.8685 43 1 7.1540 -4.6570 -1.4344 44 1 1.9834 -2.0210 0.0001 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623254_12297754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:25 Heat of formation + Delta-G solvation = -38.069758 kcal Electronic energy + Delta-G solvation = -28768.423237 eV Core-core repulsion = 24690.826152 eV Total energy + Delta-G solvation = -4077.597084 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.44526 -42.66439 -41.00832 -39.10386 -37.82560 -37.55639 -35.31684 -33.69386 -33.33370 -32.32973 -31.78550 -29.28769 -27.81613 -27.01040 -26.17444 -24.24519 -23.46830 -22.85090 -20.98307 -20.66743 -20.11932 -19.78271 -19.41602 -19.32049 -18.42442 -18.31807 -17.05463 -16.96779 -16.52982 -16.44107 -15.67078 -15.53887 -15.11151 -14.92140 -14.87486 -14.64751 -14.36247 -14.14736 -14.03669 -13.90131 -13.75897 -13.68204 -13.62973 -13.25218 -13.00905 -12.70167 -12.66155 -12.62607 -12.54878 -12.38657 -12.25291 -12.20414 -11.82650 -11.80235 -11.64868 -11.14164 -10.58794 -10.33339 -9.48478 -8.95402 -4.77214 -0.66140 0.34742 0.64289 1.20533 1.64942 1.71396 1.91580 2.07755 2.09752 2.24833 2.92024 2.98132 3.34441 3.41792 3.51377 3.68015 3.78422 3.86512 3.87665 3.91711 4.04883 4.07254 4.24126 4.26168 4.31366 4.46267 4.61144 4.61347 4.67023 4.70618 4.78589 4.79273 4.80663 4.83886 4.88148 4.92365 5.02402 5.12645 5.19652 5.22565 5.34592 5.36774 5.69687 5.84155 6.32639 6.37037 6.52967 6.72150 7.05219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.083 3.917 3 C -0.200 4.200 4 C -0.052 4.052 5 O -0.556 6.556 6 Si 0.752 3.248 7 C -0.069 4.069 8 C -0.088 4.088 9 C -0.087 4.087 10 C 0.593 3.407 11 O -0.562 6.562 12 N -0.715 5.715 13 C 0.141 3.859 14 H 0.091 0.909 15 C -0.111 4.111 16 C -0.122 4.122 17 C 0.020 3.980 18 H 0.154 0.846 19 N -0.012 5.012 20 O -0.163 6.163 21 O -0.204 6.204 22 C -0.116 4.116 23 C -0.120 4.120 24 N -0.518 5.518 25 H 0.100 0.900 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.389 0.611 30 H -0.307 1.307 31 H -0.288 1.288 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.405 0.595 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 -2.383 1.229 5.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.037 4.037 3 C -0.206 4.206 4 C -0.160 4.160 5 O -0.366 6.366 6 Si 0.658 3.342 7 C -0.078 4.078 8 C -0.145 4.145 9 C -0.199 4.199 10 C 0.382 3.618 11 O -0.441 6.441 12 N -0.368 5.368 13 C 0.037 3.963 14 H 0.109 0.891 15 C -0.149 4.149 16 C -0.160 4.160 17 C -0.077 4.077 18 H 0.172 0.828 19 N 0.507 4.493 20 O -0.388 6.388 21 O -0.416 6.416 22 C -0.154 4.154 23 C -0.159 4.159 24 N -0.116 5.116 25 H 0.118 0.882 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.100 0.900 29 H 0.239 0.761 30 H -0.235 1.235 31 H -0.216 1.216 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -3.381 -2.234 2.348 4.684 hybrid contribution 0.448 0.513 -0.152 0.698 sum -2.934 -1.721 2.195 4.048 Atomic orbital electron populations 1.20708 0.84409 1.05812 1.05583 1.20593 0.95064 0.84747 1.03304 1.18766 0.92572 0.93981 1.15256 1.24329 1.02214 0.88315 1.01171 1.86513 1.46928 1.23502 1.79612 0.94553 0.78847 0.81365 0.79446 1.19955 0.95556 0.91530 1.00717 1.20343 0.93931 0.98845 1.01332 1.19981 0.83975 0.93695 1.22228 1.17101 0.87040 0.82118 0.75566 1.90820 1.25612 1.75796 1.51893 1.45886 1.10578 1.04687 1.75617 1.21107 0.88328 0.90503 0.96408 0.89099 1.21810 0.99373 0.94021 0.99701 1.21956 1.00802 1.04348 0.88874 1.24629 0.89901 0.99235 0.93894 0.82805 1.45414 1.03620 1.00359 0.99892 1.94509 1.15934 1.63221 1.65115 1.94605 1.87788 1.09533 1.49687 1.21810 1.01526 0.91875 1.00235 1.21876 0.97662 1.01802 0.94536 1.41637 1.04023 1.09132 1.56855 0.88226 0.86358 0.86287 0.90025 0.76123 1.23523 1.21567 0.92626 0.90099 0.92637 0.75789 0.88037 0.87181 0.89052 0.88621 0.90409 0.89796 0.91343 0.87880 0.72582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.31 8.21 71.24 0.59 1.90 16 2 C 0.08 -0.23 6.84 41.34 0.28 0.05 16 3 C -0.20 -0.81 5.42 -20.12 -0.11 -0.92 16 4 C -0.05 -0.07 3.03 71.24 0.22 0.15 16 5 O -0.56 -2.52 10.01 -148.98 -1.49 -4.01 16 6 Si 0.75 -1.66 26.77 68.60 1.84 0.18 16 7 C -0.07 -0.62 6.15 -19.57 -0.12 -0.74 16 8 C -0.09 -1.00 9.50 71.24 0.68 -0.32 16 9 C -0.09 -0.39 7.06 40.35 0.28 -0.11 16 10 C 0.59 2.82 7.75 86.45 0.67 3.49 16 11 O -0.56 -7.14 14.47 -4.33 -0.06 -7.20 16 12 N -0.71 3.11 4.23 -446.49 -1.89 1.22 16 13 C 0.14 -0.89 2.78 44.99 0.13 -0.77 16 14 H 0.09 -0.22 7.58 -2.39 -0.02 -0.24 16 15 C -0.11 1.34 5.61 30.60 0.17 1.51 16 16 C -0.12 1.29 5.13 30.60 0.16 1.45 16 17 C 0.02 -0.13 2.88 44.99 0.13 0.00 16 18 H 0.15 -1.46 8.09 -2.39 -0.02 -1.48 16 19 N -0.01 -0.02 3.82 -169.38 -0.65 -0.67 16 20 O -0.16 -0.70 18.50 18.89 0.35 -0.35 16 21 O -0.20 -1.49 19.21 18.88 0.36 -1.12 16 22 C -0.12 0.66 5.15 30.59 0.16 0.82 16 23 C -0.12 0.72 5.60 30.60 0.17 0.89 16 24 N -0.52 1.89 5.99 -171.93 -1.03 0.86 16 25 H 0.10 -1.29 7.13 -2.39 -0.02 -1.31 16 26 H 0.12 -1.76 5.17 -2.39 -0.01 -1.77 16 27 H 0.12 -2.01 8.14 -2.38 -0.02 -2.03 16 28 H 0.08 -0.15 7.96 -2.38 -0.02 -0.17 16 29 H 0.39 -1.35 8.74 -74.05 -0.65 -1.99 16 30 H -0.31 -1.96 7.11 99.48 0.71 -1.25 16 31 H -0.29 -0.69 7.11 99.48 0.71 0.02 16 32 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.08 0.93 5.61 -2.38 -0.01 0.91 16 34 H 0.05 0.80 6.49 -2.39 -0.02 0.78 16 35 H 0.41 -3.88 5.99 -92.71 -0.56 -4.44 16 36 H 0.10 -1.31 8.14 -2.39 -0.02 -1.33 16 37 H 0.11 -1.61 8.14 -2.39 -0.02 -1.63 16 38 H 0.09 -1.05 6.39 -2.39 -0.02 -1.06 16 39 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 40 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.08 -0.36 7.49 -2.39 -0.02 -0.37 16 42 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 44 H 0.43 -4.90 8.19 -92.71 -0.76 -5.66 16 Total: 0.00 -28.53 348.28 -0.02 -28.55 By element: Atomic # 1 Polarization: -24.01 SS G_CDS: -0.85 Total: -24.87 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 3.40 Total: 7.41 kcal Atomic # 7 Polarization: 4.97 SS G_CDS: -3.57 Total: 1.41 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.84 Total: -12.68 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: 1.84 Total: 0.18 kcal Total: -28.53 -0.02 -28.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623254_12297754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.516 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds