Wall clock time and date at job start Tue Mar 9 2021 13:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86292 * 109.47111 * 2 1 4 4 C 1.50703 * 109.47172 * 119.99854 * 2 1 3 5 5 C 1.34244 * 126.50177 * 255.31963 * 4 2 1 6 6 N 1.36833 * 109.93748 * 180.16490 * 5 4 2 7 7 C 1.46492 * 125.05993 * 179.81135 * 6 5 4 8 8 C 1.50703 * 109.47441 * 264.69804 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 C 1.52999 * 109.47156 * 59.99882 * 13 11 10 15 15 C 1.53004 * 109.47038 * 60.00078 * 14 13 11 16 16 H 1.08994 * 109.47168 * 59.99912 * 15 14 13 17 17 N 1.46500 * 109.46890 * 180.02562 * 15 14 13 18 18 O 1.21799 * 119.99919 * 239.99384 * 17 15 14 19 19 O 1.21794 * 120.00198 * 60.00132 * 17 15 14 20 20 C 1.52999 * 109.47083 * 299.99966 * 15 14 13 21 21 C 1.52999 * 109.47156 * 60.00106 * 20 15 14 22 22 C 1.37691 * 109.87438 * 359.54740 * 6 5 4 23 23 C 1.39083 * 133.51233 * 180.23413 * 22 6 5 24 24 C 1.37797 * 119.77813 * 180.02562 * 23 22 6 25 25 C 1.38792 * 120.66395 * 0.02562 * 24 23 22 26 26 C 1.36656 * 120.52721 * 359.97438 * 25 24 23 27 27 C 1.39593 * 119.76822 * 359.97438 * 26 25 24 28 28 H 0.96694 * 113.99741 * 299.99967 * 1 2 3 29 29 H 1.09000 * 109.47141 * 239.99656 * 2 1 3 30 30 H 1.48501 * 109.99965 * 178.68055 * 3 2 1 31 31 H 1.48506 * 109.99953 * 299.99601 * 3 2 1 32 32 H 1.08003 * 125.02535 * 0.02562 * 5 4 2 33 33 H 1.08998 * 109.47276 * 144.69720 * 7 6 5 34 34 H 1.09002 * 109.47526 * 24.70031 * 7 6 5 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47054 * 179.97438 * 13 11 10 37 37 H 1.08996 * 109.47245 * 299.99926 * 13 11 10 38 38 H 1.08994 * 109.47213 * 300.00018 * 14 13 11 39 39 H 1.08998 * 109.47115 * 179.97438 * 14 13 11 40 40 H 1.09003 * 109.47054 * 300.00274 * 20 15 14 41 41 H 1.08996 * 109.47245 * 180.02562 * 20 15 14 42 42 H 1.08998 * 109.47115 * 180.02562 * 21 20 15 43 43 H 1.08994 * 109.47213 * 59.99982 * 21 20 15 44 44 H 1.07997 * 120.11360 * 0.05807 * 23 22 6 45 45 H 1.08000 * 119.66408 * 180.02562 * 24 23 22 46 46 H 1.07998 * 119.72905 * 180.02562 * 25 24 23 47 47 H 1.08005 * 120.11447 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.4554 -0.1372 2.3255 6 7 2.8028 -1.0989 3.2347 7 6 3.4075 -0.8402 4.5437 8 6 4.9058 -0.9626 4.4379 9 8 5.4180 -1.2391 3.3739 10 7 5.6765 -0.7657 5.5259 11 6 7.1334 -0.8786 5.4217 12 1 7.3869 -1.6636 4.7092 13 6 7.7152 0.4527 4.9421 14 6 7.3594 1.5545 5.9422 15 6 7.9434 1.2070 7.3131 16 1 9.0273 1.1229 7.2355 17 7 7.6021 2.2618 8.2708 18 8 8.4861 2.8828 8.8334 19 8 6.4345 2.5175 8.5047 20 6 7.3616 -0.1243 7.7926 21 6 7.7174 -1.2262 6.7925 22 6 2.4938 -2.3456 2.7385 23 6 2.6293 -3.6361 3.2392 24 6 2.2158 -4.7108 2.4823 25 6 1.6650 -4.5194 1.2228 26 6 1.5226 -3.2601 0.7116 27 6 1.9338 -2.1569 1.4616 28 1 -0.3932 0.4417 0.7650 29 1 1.7924 -0.5139 -0.8900 30 1 3.5346 1.7702 0.0321 31 1 1.5616 2.4678 -1.2086 32 1 2.5857 0.9256 2.4667 33 1 3.0339 -1.5657 5.2663 34 1 3.1474 0.1662 4.8717 35 1 5.2668 -0.5449 6.3770 36 1 8.7993 0.3687 4.8650 37 1 7.2992 0.7003 3.9656 38 1 6.2755 1.6386 6.0198 39 1 7.7742 2.5029 5.6008 40 1 6.2776 -0.0403 7.8701 41 1 7.7772 -0.3717 8.7694 42 1 7.3026 -2.1745 7.1339 43 1 8.8013 -1.3102 6.7150 44 1 3.0567 -3.7954 4.2182 45 1 2.3215 -5.7120 2.8731 46 1 1.3456 -5.3724 0.6427 47 1 1.0927 -3.1188 -0.2691 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623254_9818708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:02 Heat of formation + Delta-G solvation = -4.440906 kcal Electronic energy + Delta-G solvation = -32695.160125 eV Core-core repulsion = 28234.342875 eV Total energy + Delta-G solvation = -4460.817249 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.41500 -42.54369 -41.19772 -39.28281 -38.09589 -37.59637 -37.52146 -35.19319 -34.09263 -32.30596 -32.20124 -31.22231 -30.23688 -28.89453 -27.20185 -25.75284 -24.21936 -23.84423 -23.37905 -22.85476 -22.00310 -20.72578 -20.67174 -19.78161 -19.32220 -18.78333 -18.46048 -18.28864 -17.72741 -17.28876 -16.75497 -16.70128 -16.43386 -16.16580 -15.94659 -15.52660 -15.33538 -15.19998 -14.86694 -14.70739 -14.64334 -14.43327 -14.08889 -13.99809 -13.74926 -13.64482 -13.63026 -13.18530 -12.72415 -12.66829 -12.62379 -12.59167 -12.51826 -12.27856 -12.23330 -12.17710 -12.13250 -11.82931 -11.78332 -11.63285 -11.16545 -10.55947 -10.32104 -10.25540 -9.16461 -8.63120 -5.06851 -0.63582 0.13397 0.62398 0.67204 1.32802 1.42126 1.44731 1.62390 1.73789 1.98195 2.18586 2.93696 2.94914 3.01303 3.44202 3.52908 3.58395 3.64126 3.67223 3.72155 3.74485 3.86907 3.88553 3.93521 4.04195 4.10683 4.16766 4.20617 4.28205 4.29437 4.33863 4.46970 4.55370 4.65353 4.70476 4.71469 4.77706 4.80085 4.83798 4.87560 4.93938 5.03057 5.12376 5.22588 5.35666 5.49499 5.64982 5.72195 5.74396 6.18412 6.22330 6.39271 6.43090 6.87912 7.10172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.041 4.041 3 Si 0.800 3.200 4 C -0.225 4.225 5 C 0.080 3.920 6 N -0.465 5.465 7 C 0.084 3.916 8 C 0.495 3.505 9 O -0.568 6.568 10 N -0.709 5.709 11 C 0.143 3.857 12 H 0.083 0.917 13 C -0.119 4.119 14 C -0.115 4.115 15 C 0.019 3.981 16 H 0.148 0.852 17 N -0.012 5.012 18 O -0.214 6.214 19 O -0.154 6.154 20 C -0.121 4.121 21 C -0.110 4.110 22 C 0.092 3.908 23 C -0.132 4.132 24 C -0.109 4.109 25 C -0.154 4.154 26 C -0.092 4.092 27 C -0.118 4.118 28 H 0.393 0.607 29 H 0.088 0.912 30 H -0.294 1.294 31 H -0.299 1.299 32 H 0.207 0.793 33 H 0.144 0.856 34 H 0.166 0.834 35 H 0.417 0.583 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.135 0.865 45 H 0.145 0.855 46 H 0.134 0.866 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -0.720 6.895 6.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.150 4.150 3 Si 0.705 3.295 4 C -0.233 4.233 5 C -0.046 4.046 6 N -0.148 5.148 7 C -0.040 4.040 8 C 0.280 3.720 9 O -0.446 6.446 10 N -0.364 5.364 11 C 0.038 3.962 12 H 0.101 0.899 13 C -0.159 4.159 14 C -0.153 4.153 15 C -0.078 4.078 16 H 0.165 0.835 17 N 0.507 4.493 18 O -0.423 6.423 19 O -0.381 6.381 20 C -0.159 4.159 21 C -0.149 4.149 22 C -0.013 4.013 23 C -0.152 4.152 24 C -0.128 4.128 25 C -0.173 4.173 26 C -0.111 4.111 27 C -0.122 4.122 28 H 0.243 0.757 29 H 0.105 0.895 30 H -0.221 1.221 31 H -0.226 1.226 32 H 0.224 0.776 33 H 0.161 0.839 34 H 0.183 0.817 35 H 0.255 0.745 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.153 0.847 45 H 0.163 0.837 46 H 0.152 0.848 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.723 -1.106 5.002 5.405 hybrid contribution 0.130 -0.349 -0.101 0.386 sum 1.853 -1.455 4.901 5.438 Atomic orbital electron populations 1.86454 1.17761 1.82375 1.50220 1.24563 0.84707 1.10316 0.95445 0.94148 0.76678 0.73602 0.85056 1.20776 1.12022 0.91908 0.98550 1.22051 0.98823 0.95305 0.88371 1.43416 1.51863 1.03719 1.15757 1.22031 0.88818 1.09228 0.83943 1.21406 0.90522 0.76106 0.83947 1.90818 1.75712 1.48226 1.29841 1.45990 1.06715 1.71427 1.12296 1.20987 0.79564 0.97313 0.98357 0.89911 1.21848 1.02809 0.93348 0.97853 1.21822 1.03224 1.00500 0.89770 1.24629 1.06261 0.87408 0.89500 0.83474 1.45425 1.00159 1.02400 1.01341 1.94615 1.42258 1.52436 1.53017 1.94508 1.04496 1.71374 1.67747 1.21956 1.03376 0.89556 1.01028 1.21780 1.03563 0.98221 0.91285 1.18371 1.01489 0.87106 0.94340 1.20253 1.04523 0.89020 1.01426 1.21132 0.98259 0.99110 0.94275 1.20906 1.02410 0.96928 0.97084 1.20441 0.99343 0.91892 0.99384 1.19365 1.04049 0.93873 0.94947 0.75693 0.89490 1.22115 1.22648 0.77624 0.83851 0.81702 0.74472 0.88823 0.91329 0.88625 0.90610 0.88219 0.89100 0.87843 0.88029 0.84682 0.83680 0.84774 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.19 12.88 -148.98 -1.92 -4.11 16 2 C -0.04 -0.16 3.06 71.24 0.22 0.06 16 3 Si 0.80 -0.61 30.76 68.60 2.11 1.50 16 4 C -0.23 -1.10 5.57 -18.62 -0.10 -1.21 16 5 C 0.08 -0.06 9.89 83.00 0.82 0.76 16 6 N -0.47 0.18 2.27 -520.00 -1.18 -1.00 16 7 C 0.08 -0.82 6.48 85.64 0.56 -0.26 16 8 C 0.49 -2.34 7.86 87.66 0.69 -1.65 16 9 O -0.57 -4.01 16.09 -3.04 -0.05 -4.06 16 10 N -0.71 8.02 4.23 -442.53 -1.87 6.14 16 11 C 0.14 -1.41 2.78 44.99 0.13 -1.28 16 12 H 0.08 -0.40 7.58 -2.39 -0.02 -0.42 16 13 C -0.12 1.05 5.60 30.59 0.17 1.22 16 14 C -0.11 1.03 5.15 30.60 0.16 1.19 16 15 C 0.02 -0.16 2.88 44.99 0.13 -0.03 16 16 H 0.15 -1.51 8.09 -2.39 -0.02 -1.53 16 17 N -0.01 0.00 3.82 -169.39 -0.65 -0.65 16 18 O -0.21 -1.39 19.21 18.89 0.36 -1.03 16 19 O -0.15 -0.36 18.50 18.89 0.35 -0.01 16 20 C -0.12 1.55 5.13 30.59 0.16 1.71 16 21 C -0.11 1.59 5.61 30.60 0.17 1.76 16 22 C 0.09 0.54 6.80 39.03 0.27 0.81 16 23 C -0.13 -0.51 10.00 22.37 0.22 -0.29 16 24 C -0.11 -0.45 10.01 22.30 0.22 -0.23 16 25 C -0.15 -1.00 9.97 22.03 0.22 -0.78 16 26 C -0.09 -0.89 10.05 22.23 0.22 -0.66 16 27 C -0.12 -1.11 6.35 -20.20 -0.13 -1.24 16 28 H 0.39 -2.06 8.70 -74.06 -0.64 -2.70 16 29 H 0.09 0.65 7.96 -2.39 -0.02 0.64 16 30 H -0.29 -1.58 7.11 99.48 0.71 -0.87 16 31 H -0.30 -1.95 7.11 99.48 0.71 -1.24 16 32 H 0.21 -1.94 6.35 -2.91 -0.02 -1.96 16 33 H 0.14 -2.08 8.14 -2.39 -0.02 -2.10 16 34 H 0.17 -2.95 8.12 -2.39 -0.02 -2.97 16 35 H 0.42 -7.10 6.87 -92.71 -0.64 -7.74 16 36 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.10 -0.92 7.49 -2.39 -0.02 -0.94 16 39 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.10 -1.46 6.39 -2.39 -0.02 -1.47 16 41 H 0.09 -1.10 8.14 -2.39 -0.02 -1.12 16 42 H 0.10 -1.61 8.14 -2.39 -0.02 -1.63 16 43 H 0.10 -1.58 8.14 -2.39 -0.02 -1.60 16 44 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 45 H 0.15 -0.15 8.06 -2.91 -0.02 -0.18 16 46 H 0.13 0.35 8.06 -2.91 -0.02 0.33 16 47 H 0.11 1.06 8.06 -2.91 -0.02 1.03 16 Total: 0.00 -32.89 391.93 1.05 -31.85 By element: Atomic # 1 Polarization: -28.29 SS G_CDS: -0.22 Total: -28.51 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 4.12 Total: -0.11 kcal Atomic # 7 Polarization: 8.19 SS G_CDS: -3.70 Total: 4.49 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -1.26 Total: -9.21 kcal Atomic # 14 Polarization: -0.61 SS G_CDS: 2.11 Total: 1.50 kcal Total: -32.89 1.05 -31.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623254_9818708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.404 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds