Wall clock time and date at job start Tue Mar 9 2021 13:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39282 * 121.03554 * 2 1 4 4 C 1.46496 * 134.19687 * 359.95891 * 3 2 1 5 5 C 1.50699 * 126.59670 * 0.26626 * 4 3 2 6 6 O 1.42905 * 109.47191 * 75.03126 * 5 4 3 7 7 Si 1.86308 * 109.46954 * 195.02922 * 5 4 3 8 8 C 1.34173 * 106.80360 * 180.31258 * 4 3 2 9 9 N 1.36951 * 109.95206 * 0.02562 * 8 4 3 10 10 C 1.37150 * 110.11367 * 359.97438 * 9 8 4 11 11 N 1.32824 * 132.97199 * 180.02562 * 10 9 8 12 12 C 1.31303 * 121.89409 * 179.97438 * 11 10 9 13 13 C 1.39752 * 121.02803 * 179.76274 * 2 1 3 14 14 C 1.47666 * 120.45519 * 359.96875 * 13 2 1 15 15 O 1.21571 * 119.99890 * 353.77275 * 14 13 2 16 16 N 1.34778 * 119.99845 * 173.76823 * 14 13 2 17 17 C 1.46501 * 119.99999 * 180.02562 * 16 14 13 18 18 H 1.09006 * 109.46732 * 34.99918 * 17 16 14 19 19 C 1.52999 * 109.47356 * 154.99924 * 17 16 14 20 20 C 1.53003 * 109.47138 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.46981 * 299.99866 * 20 19 17 22 22 H 1.08993 * 109.47148 * 300.00070 * 21 20 19 23 23 C 1.50693 * 109.46827 * 179.97438 * 21 20 19 24 24 N 1.30529 * 126.34369 * 95.02674 * 23 21 20 25 25 N 1.28597 * 109.67296 * 179.97438 * 24 23 21 26 26 C 1.30521 * 109.67062 * 0.02562 * 25 24 23 27 27 N 1.35493 * 107.31154 * 359.76699 * 26 25 24 28 28 C 1.52999 * 109.47075 * 60.00095 * 21 20 19 29 29 C 1.53003 * 109.47478 * 299.99977 * 28 21 20 30 30 H 1.09005 * 109.46726 * 263.96031 * 1 2 3 31 31 H 1.09001 * 109.46764 * 23.95401 * 1 2 3 32 32 H 1.09001 * 109.47561 * 143.96089 * 1 2 3 33 33 H 1.08995 * 109.47704 * 315.02932 * 5 4 3 34 34 H 0.96702 * 113.99919 * 59.99450 * 6 5 4 35 35 H 1.48499 * 109.99771 * 180.02562 * 7 5 4 36 36 H 1.48499 * 109.99696 * 301.31946 * 7 5 4 37 37 H 1.08000 * 125.02614 * 180.02562 * 8 4 3 38 38 H 0.97008 * 124.94174 * 179.97438 * 9 8 4 39 39 H 1.08002 * 119.31178 * 180.02562 * 12 11 10 40 40 H 0.97003 * 120.00274 * 359.97438 * 16 14 13 41 41 H 1.08993 * 109.47153 * 59.99925 * 19 17 16 42 42 H 1.08997 * 109.47193 * 299.99840 * 19 17 16 43 43 H 1.08993 * 109.47236 * 59.99882 * 20 19 17 44 44 H 1.08999 * 109.46804 * 180.02562 * 20 19 17 45 45 H 1.08001 * 126.34656 * 179.97438 * 26 25 24 46 46 H 0.97000 * 126.98132 * 180.22666 * 27 26 25 47 47 H 1.08997 * 109.47193 * 180.02562 * 28 21 20 48 48 H 1.09006 * 109.47205 * 59.99619 * 28 21 20 49 49 H 1.09001 * 109.46788 * 300.00457 * 29 28 21 50 50 H 1.08991 * 109.47304 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1934 0.0000 4 6 1.8516 2.6100 -0.0008 5 6 0.4527 3.1704 0.0038 6 8 -0.1138 3.0265 1.3078 7 14 0.5053 4.9754 -0.4547 8 6 2.9948 3.3125 -0.0073 9 7 4.0669 2.4604 -0.0114 10 6 3.6348 1.1587 -0.0069 11 7 4.2720 -0.0067 -0.0077 12 6 3.6266 -1.1502 -0.0020 13 6 2.2273 -1.1975 0.0050 14 6 1.5223 -2.4950 0.0110 15 8 0.3125 -2.5289 0.1259 16 7 2.2201 -3.6417 -0.1109 17 6 1.5207 -4.9289 -0.1055 18 1 0.5556 -4.8201 -0.6005 19 6 2.3609 -5.9691 -0.8491 20 6 1.6300 -7.3133 -0.8440 21 6 1.4134 -7.7704 0.6000 22 1 2.3783 -7.8795 1.0952 23 6 0.6931 -9.0940 0.6051 24 7 1.2448 -10.2747 0.6792 25 7 0.3325 -11.1808 0.6588 26 6 -0.8424 -10.6195 0.5701 27 7 -0.6475 -9.2790 0.5384 28 6 0.5733 -6.7303 1.3437 29 6 1.3040 -5.3860 1.3385 30 1 -0.3633 -0.1081 1.0220 31 1 -0.3633 0.9392 -0.4172 32 1 -0.3634 -0.8310 -0.6046 33 1 -0.1578 2.6295 -0.7192 34 1 0.3789 3.4833 2.0033 35 1 -0.8682 5.5400 -0.4532 36 1 1.3605 5.7185 0.5053 37 1 3.0598 4.3905 -0.0091 38 1 4.9966 2.7372 -0.0167 39 1 4.1868 -2.0736 -0.0026 40 1 3.1854 -3.6146 -0.2031 41 1 3.3259 -6.0778 -0.3542 42 1 2.5148 -5.6436 -1.8779 43 1 0.6652 -7.2042 -1.3391 44 1 2.2289 -8.0544 -1.3734 45 1 -1.7940 -11.1289 0.5327 46 1 -1.3291 -8.5915 0.4783 47 1 0.4193 -7.0557 2.3725 48 1 -0.3916 -6.6211 0.8484 49 1 2.2689 -5.4952 1.8336 50 1 0.7053 -4.6450 1.8679 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_12890568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:52 Heat of formation + Delta-G solvation = 77.024002 kcal Electronic energy + Delta-G solvation = -34814.208993 eV Core-core repulsion = 30230.483459 eV Total energy + Delta-G solvation = -4583.725533 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.13764 -42.84774 -41.20339 -39.56592 -38.61544 -37.82305 -35.91902 -34.96458 -34.56638 -32.70231 -31.90187 -31.84917 -31.04860 -29.45266 -28.79463 -26.48637 -25.14060 -24.43501 -24.05597 -23.77335 -23.17491 -22.15921 -21.64643 -20.96823 -20.62381 -19.33156 -19.26897 -18.77284 -17.76944 -17.60160 -17.16337 -16.84734 -16.68597 -16.56470 -16.34837 -16.21867 -15.79796 -15.60624 -15.44663 -15.22103 -15.12202 -14.84589 -14.66107 -14.21300 -14.09449 -13.97287 -13.75187 -13.61613 -13.56995 -13.31267 -13.25525 -13.09056 -12.79321 -12.48048 -12.35097 -12.24361 -12.16927 -11.82794 -11.79206 -11.63546 -11.49431 -11.32099 -11.19665 -11.13172 -10.53748 -10.25991 -10.24054 -10.08360 -9.60545 -9.12206 -4.84438 -0.32880 -0.06391 0.86725 1.35102 1.41985 1.62379 1.69235 1.82976 1.85620 1.90134 2.04575 2.08600 2.77516 3.18033 3.32534 3.44879 3.55996 3.56628 3.64164 3.68838 3.72834 3.76645 3.88825 3.99270 4.13916 4.15174 4.23686 4.27223 4.30706 4.35822 4.36073 4.39222 4.42338 4.45709 4.52915 4.61953 4.68024 4.73094 4.80743 4.82638 5.01341 5.03112 5.04327 5.06353 5.11399 5.18026 5.19459 5.26667 5.29740 5.31973 5.41383 5.54939 5.74536 6.22509 6.24324 6.51795 6.58977 6.84381 7.20694 7.71344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.062 3.938 3 C -0.165 4.165 4 C -0.197 4.197 5 C -0.058 4.058 6 O -0.549 6.549 7 Si 0.778 3.222 8 C 0.089 3.911 9 N -0.560 5.560 10 C 0.288 3.712 11 N -0.517 5.517 12 C 0.180 3.820 13 C -0.241 4.241 14 C 0.572 3.428 15 O -0.563 6.563 16 N -0.710 5.710 17 C 0.148 3.852 18 H 0.076 0.924 19 C -0.117 4.117 20 C -0.101 4.101 21 C 0.003 3.997 22 H 0.108 0.892 23 C 0.192 3.808 24 N -0.343 5.343 25 N -0.354 5.354 26 C 0.168 3.832 27 N -0.569 5.569 28 C -0.107 4.107 29 C -0.122 4.122 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.384 0.616 35 H -0.308 1.308 36 H -0.260 1.260 37 H 0.219 0.781 38 H 0.438 0.562 39 H 0.195 0.805 40 H 0.413 0.587 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.261 0.739 46 H 0.445 0.555 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 7.139 -3.034 7.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.053 3.947 3 C -0.172 4.172 4 C -0.204 4.204 5 C -0.166 4.166 6 O -0.357 6.357 7 Si 0.681 3.319 8 C -0.038 4.038 9 N -0.167 5.167 10 C 0.054 3.946 11 N -0.231 5.231 12 C 0.012 3.988 13 C -0.248 4.248 14 C 0.360 3.640 15 O -0.443 6.443 16 N -0.362 5.362 17 C 0.044 3.956 18 H 0.094 0.906 19 C -0.155 4.155 20 C -0.140 4.140 21 C -0.018 4.018 22 H 0.126 0.874 23 C -0.079 4.079 24 N -0.182 5.182 25 N -0.193 5.193 26 C -0.122 4.122 27 N -0.183 5.183 28 C -0.146 4.146 29 C -0.161 4.161 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.233 0.767 35 H -0.236 1.236 36 H -0.186 1.186 37 H 0.236 0.764 38 H 0.279 0.721 39 H 0.211 0.789 40 H 0.251 0.749 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.277 0.723 46 H 0.288 0.712 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.494 6.499 -2.922 7.549 hybrid contribution -1.516 0.721 1.241 2.087 sum 0.978 7.220 -1.682 7.477 Atomic orbital electron populations 1.20988 0.89342 1.03358 1.02977 1.20070 0.97033 0.90200 0.87388 1.19734 0.93228 0.94390 1.09866 1.20704 0.96060 0.90331 1.13294 1.24782 0.90682 1.13587 0.87550 1.86604 1.55102 1.76639 1.17382 0.94139 0.79133 0.70239 0.88384 1.22313 0.84049 0.97182 1.00247 1.41609 1.10583 1.01788 1.62717 1.18779 0.89538 0.86830 0.99440 1.66511 1.40934 0.96508 1.19112 1.22987 0.89756 0.95276 0.90812 1.20542 0.95418 0.93514 1.15358 1.17937 0.86445 0.83917 0.75657 1.90737 1.15002 1.87525 1.51082 1.45838 1.11463 1.04866 1.74029 1.21018 0.96733 0.81737 0.96114 0.90551 1.21747 0.99391 0.92626 1.01722 1.21471 1.01733 0.96876 0.93943 1.19827 0.98788 0.84497 0.98678 0.87372 1.25223 0.82142 0.98309 1.02252 1.74189 1.26195 0.97095 1.20750 1.74191 0.98087 1.26599 1.20430 1.27286 1.01893 0.81258 1.01772 1.44096 1.08860 1.09783 1.55605 1.21530 0.98774 0.93472 1.00781 1.21829 1.01638 0.95973 0.96670 0.91247 0.90775 0.89720 0.87061 0.76653 1.23635 1.18564 0.76445 0.72085 0.78872 0.74938 0.89133 0.89775 0.91160 0.90936 0.72344 0.71159 0.91036 0.90750 0.90170 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 8.68 71.23 0.62 -0.16 16 2 C 0.06 0.40 5.98 -19.25 -0.12 0.28 16 3 C -0.17 -0.75 6.16 -20.19 -0.12 -0.87 16 4 C -0.20 0.16 5.57 -18.64 -0.10 0.06 16 5 C -0.06 0.08 2.08 71.24 0.15 0.23 16 6 O -0.55 -1.17 12.88 -148.98 -1.92 -3.09 16 7 Si 0.78 -4.42 30.83 68.60 2.11 -2.30 16 8 C 0.09 -0.55 10.44 82.97 0.87 0.32 16 9 N -0.56 2.17 6.04 -192.25 -1.16 1.01 16 10 C 0.29 0.93 8.42 134.02 1.13 2.06 16 11 N -0.52 -1.93 10.37 -191.75 -1.99 -3.92 16 12 C 0.18 0.07 10.67 85.20 0.91 0.98 16 13 C -0.24 -0.90 5.89 -19.99 -0.12 -1.02 16 14 C 0.57 2.02 7.68 86.73 0.67 2.68 16 15 O -0.56 -5.64 13.16 -3.94 -0.05 -5.69 16 16 N -0.71 2.76 5.03 -445.57 -2.24 0.52 16 17 C 0.15 -0.68 2.45 44.99 0.11 -0.57 16 18 H 0.08 -0.07 7.58 -2.38 -0.02 -0.09 16 19 C -0.12 0.96 5.39 30.59 0.16 1.12 16 20 C -0.10 0.59 5.19 30.60 0.16 0.75 16 21 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 22 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 23 C 0.19 0.37 6.99 137.97 0.96 1.33 16 24 N -0.34 -3.77 12.21 -50.16 -0.61 -4.38 16 25 N -0.35 -3.77 12.21 -59.99 -0.73 -4.50 16 26 C 0.17 -0.04 13.19 180.11 2.37 2.34 16 27 N -0.57 2.00 5.96 -189.86 -1.13 0.87 16 28 C -0.11 0.61 4.97 30.59 0.15 0.77 16 29 C -0.12 0.52 5.50 30.60 0.17 0.69 16 30 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.38 5.06 -2.39 -0.01 0.37 16 32 H 0.08 0.77 5.96 -2.39 -0.01 0.76 16 33 H 0.11 -0.07 6.03 -2.39 -0.01 -0.09 16 34 H 0.38 -1.55 8.70 -74.06 -0.64 -2.20 16 35 H -0.31 -1.09 7.11 99.48 0.71 -0.38 16 36 H -0.26 1.34 7.00 99.48 0.70 2.04 16 37 H 0.22 -3.04 6.28 -2.91 -0.02 -3.06 16 38 H 0.44 -4.04 8.96 -92.70 -0.83 -4.87 16 39 H 0.19 -1.54 6.43 -2.91 -0.02 -1.56 16 40 H 0.41 -3.95 6.68 -92.71 -0.62 -4.57 16 41 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.26 -2.62 8.06 -2.91 -0.02 -2.64 16 46 H 0.45 -4.77 8.28 -92.71 -0.77 -5.53 16 47 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 48 H 0.07 -0.56 7.51 -2.38 -0.02 -0.57 16 49 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 50 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -34.36 399.49 -1.56 -35.92 By element: Atomic # 1 Polarization: -23.58 SS G_CDS: -1.77 Total: -25.35 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 7.94 Total: 10.93 kcal Atomic # 7 Polarization: -2.55 SS G_CDS: -7.87 Total: -10.41 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -1.97 Total: -8.77 kcal Atomic # 14 Polarization: -4.42 SS G_CDS: 2.11 Total: -2.30 kcal Total: -34.36 -1.56 -35.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_12890568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.940 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds